data_5NL9 # _model_server_result.job_id eWo9LkrnAmdA1D-5OFpuuA _model_server_result.datetime_utc '2024-11-26 03:05:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nl9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5NL9 # _exptl.entry_id 5NL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.82 _cell.angle_gamma 90 _cell.entry_id 5NL9 _cell.length_a 48.683 _cell.length_b 56.1 _cell.length_c 68.794 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 42 A HIS 36 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc2 A OD2 ASP 90 A ASP 84 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc3 A NE2 HIS 96 A HIS 90 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc4 A NE2 HIS 98 A HIS 92 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc5 A OE1 GLU 102 A GLU 96 1_555 D K K . A K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.257 ? metalc ? metalc6 A OD1 ASP 109 A ASP 103 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc7 D K K . A K 202 1_555 H O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.081 ? metalc ? metalc8 D K K . A K 202 1_555 B OD1 ASN 78 B ASN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? metalc ? metalc9 D K K . A K 202 1_555 B O ASN 138 B ASN 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc10 D K K . A K 202 1_555 I O HOH . B HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.229 ? metalc ? metalc11 B NE2 HIS 96 B HIS 90 1_555 E ZN ZN . B ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc12 B NE2 HIS 98 B HIS 92 1_555 E ZN ZN . B ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc13 B OD1 ASP 109 B ASP 103 1_555 E ZN ZN . B ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc14 E ZN ZN . B ZN 200 1_555 I O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NL9 _atom_sites.fract_transf_matrix[1][1] 0.020541 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00582 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017825 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015108 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 201 200 ZN ZN . D 3 K A 1 202 203 K K . E 2 ZN B 1 200 200 ZN ZN . F 4 UNX B 1 201 201 UNX UNX . G 4 UNX B 1 202 202 UNX UNX . H 5 HOH A 1 301 301 HOH HOH . H 5 HOH A 2 302 302 HOH HOH . H 5 HOH A 3 303 303 HOH HOH . H 5 HOH A 4 304 304 HOH HOH . H 5 HOH A 5 305 305 HOH HOH . H 5 HOH A 6 306 306 HOH HOH . H 5 HOH A 7 307 307 HOH HOH . H 5 HOH A 8 308 308 HOH HOH . H 5 HOH A 9 309 309 HOH HOH . H 5 HOH A 10 310 310 HOH HOH . H 5 HOH A 11 311 311 HOH HOH . H 5 HOH A 12 312 312 HOH HOH . H 5 HOH A 13 313 313 HOH HOH . H 5 HOH A 14 314 314 HOH HOH . H 5 HOH A 15 315 315 HOH HOH . H 5 HOH A 16 316 316 HOH HOH . H 5 HOH A 17 317 317 HOH HOH . H 5 HOH A 18 318 318 HOH HOH . H 5 HOH A 19 319 319 HOH HOH . H 5 HOH A 20 320 320 HOH HOH . H 5 HOH A 21 321 321 HOH HOH . H 5 HOH A 22 322 322 HOH HOH . H 5 HOH A 23 323 323 HOH HOH . H 5 HOH A 24 324 324 HOH HOH . H 5 HOH A 25 325 325 HOH HOH . H 5 HOH A 26 326 326 HOH HOH . H 5 HOH A 27 327 327 HOH HOH . H 5 HOH A 28 328 328 HOH HOH . H 5 HOH A 29 329 329 HOH HOH . H 5 HOH A 30 330 330 HOH HOH . H 5 HOH A 31 331 331 HOH HOH . H 5 HOH A 32 332 332 HOH HOH . H 5 HOH A 33 333 333 HOH HOH . H 5 HOH A 34 334 334 HOH HOH . H 5 HOH A 35 335 335 HOH HOH . H 5 HOH A 36 336 336 HOH HOH . H 5 HOH A 37 337 337 HOH HOH . H 5 HOH A 38 338 338 HOH HOH . H 5 HOH A 39 339 339 HOH HOH . H 5 HOH A 40 340 340 HOH HOH . H 5 HOH A 41 341 341 HOH HOH . H 5 HOH A 42 342 342 HOH HOH . H 5 HOH A 43 343 343 HOH HOH . H 5 HOH A 44 344 344 HOH HOH . H 5 HOH A 45 345 345 HOH HOH . H 5 HOH A 46 346 346 HOH HOH . H 5 HOH A 47 347 347 HOH HOH . H 5 HOH A 48 348 348 HOH HOH . H 5 HOH A 49 349 349 HOH HOH . H 5 HOH A 50 350 350 HOH HOH . H 5 HOH A 51 351 351 HOH HOH . H 5 HOH A 52 352 352 HOH HOH . H 5 HOH A 53 353 353 HOH HOH . H 5 HOH A 54 354 354 HOH HOH . H 5 HOH A 55 355 355 HOH HOH . H 5 HOH A 56 356 356 HOH HOH . H 5 HOH A 57 357 357 HOH HOH . H 5 HOH A 58 358 358 HOH HOH . H 5 HOH A 59 359 359 HOH HOH . H 5 HOH A 60 360 360 HOH HOH . H 5 HOH A 61 361 361 HOH HOH . H 5 HOH A 62 362 362 HOH HOH . H 5 HOH A 63 363 363 HOH HOH . H 5 HOH A 64 364 364 HOH HOH . H 5 HOH A 65 365 365 HOH HOH . H 5 HOH A 66 366 366 HOH HOH . H 5 HOH A 67 367 367 HOH HOH . H 5 HOH A 68 368 368 HOH HOH . H 5 HOH A 69 369 369 HOH HOH . H 5 HOH A 70 370 370 HOH HOH . H 5 HOH A 71 371 371 HOH HOH . H 5 HOH A 72 372 372 HOH HOH . H 5 HOH A 73 373 373 HOH HOH . H 5 HOH A 74 374 374 HOH HOH . H 5 HOH A 75 375 375 HOH HOH . H 5 HOH A 76 376 376 HOH HOH . H 5 HOH A 77 377 377 HOH HOH . H 5 HOH A 78 378 378 HOH HOH . H 5 HOH A 79 379 379 HOH HOH . H 5 HOH A 80 380 380 HOH HOH . I 5 HOH B 1 301 301 HOH HOH . I 5 HOH B 2 302 302 HOH HOH . I 5 HOH B 3 303 303 HOH HOH . I 5 HOH B 4 304 304 HOH HOH . I 5 HOH B 5 305 305 HOH HOH . I 5 HOH B 6 306 306 HOH HOH . I 5 HOH B 7 307 307 HOH HOH . I 5 HOH B 8 308 308 HOH HOH . I 5 HOH B 9 309 309 HOH HOH . I 5 HOH B 10 310 310 HOH HOH . I 5 HOH B 11 311 311 HOH HOH . I 5 HOH B 12 312 312 HOH HOH . I 5 HOH B 13 313 313 HOH HOH . I 5 HOH B 14 314 314 HOH HOH . I 5 HOH B 15 315 315 HOH HOH . I 5 HOH B 16 316 316 HOH HOH . I 5 HOH B 17 317 317 HOH HOH . I 5 HOH B 18 318 318 HOH HOH . I 5 HOH B 19 319 319 HOH HOH . I 5 HOH B 20 320 320 HOH HOH . I 5 HOH B 21 321 321 HOH HOH . I 5 HOH B 22 322 322 HOH HOH . I 5 HOH B 23 323 323 HOH HOH . I 5 HOH B 24 324 324 HOH HOH . I 5 HOH B 25 325 325 HOH HOH . I 5 HOH B 26 326 326 HOH HOH . I 5 HOH B 27 327 327 HOH HOH . I 5 HOH B 28 328 328 HOH HOH . I 5 HOH B 29 329 329 HOH HOH . I 5 HOH B 30 330 330 HOH HOH . I 5 HOH B 31 331 331 HOH HOH . I 5 HOH B 32 332 332 HOH HOH . I 5 HOH B 33 333 333 HOH HOH . I 5 HOH B 34 334 334 HOH HOH . I 5 HOH B 35 335 335 HOH HOH . I 5 HOH B 36 336 336 HOH HOH . I 5 HOH B 37 337 337 HOH HOH . I 5 HOH B 38 338 338 HOH HOH . I 5 HOH B 39 339 339 HOH HOH . I 5 HOH B 40 340 340 HOH HOH . I 5 HOH B 41 341 341 HOH HOH . I 5 HOH B 42 342 342 HOH HOH . I 5 HOH B 43 343 343 HOH HOH . I 5 HOH B 44 344 344 HOH HOH . I 5 HOH B 45 345 345 HOH HOH . I 5 HOH B 46 346 346 HOH HOH . I 5 HOH B 47 347 347 HOH HOH . I 5 HOH B 48 348 348 HOH HOH . I 5 HOH B 49 349 349 HOH HOH . I 5 HOH B 50 350 350 HOH HOH . I 5 HOH B 51 351 351 HOH HOH . I 5 HOH B 52 352 352 HOH HOH . I 5 HOH B 53 353 353 HOH HOH . I 5 HOH B 54 354 354 HOH HOH . I 5 HOH B 55 355 355 HOH HOH . I 5 HOH B 56 356 356 HOH HOH . I 5 HOH B 57 357 357 HOH HOH . I 5 HOH B 58 358 358 HOH HOH . I 5 HOH B 59 359 359 HOH HOH . I 5 HOH B 60 360 360 HOH HOH . I 5 HOH B 61 361 361 HOH HOH . I 5 HOH B 62 362 362 HOH HOH . I 5 HOH B 63 363 363 HOH HOH . I 5 HOH B 64 364 364 HOH HOH . I 5 HOH B 65 365 365 HOH HOH . I 5 HOH B 66 366 366 HOH HOH . I 5 HOH B 67 367 367 HOH HOH . I 5 HOH B 68 368 368 HOH HOH . I 5 HOH B 69 369 369 HOH HOH . I 5 HOH B 70 370 370 HOH HOH . I 5 HOH B 71 371 371 HOH HOH . I 5 HOH B 72 372 372 HOH HOH . I 5 HOH B 73 373 373 HOH HOH . I 5 HOH B 74 374 374 HOH HOH . I 5 HOH B 75 375 375 HOH HOH . I 5 HOH B 76 376 376 HOH HOH . I 5 HOH B 77 377 377 HOH HOH . I 5 HOH B 78 378 378 HOH HOH . I 5 HOH B 79 379 379 HOH HOH . I 5 HOH B 80 380 380 HOH HOH . I 5 HOH B 81 381 381 HOH HOH . I 5 HOH B 82 382 382 HOH HOH . I 5 HOH B 83 383 383 HOH HOH . I 5 HOH B 84 384 384 HOH HOH . I 5 HOH B 85 385 385 HOH HOH . I 5 HOH B 86 386 386 HOH HOH . I 5 HOH B 87 387 387 HOH HOH . I 5 HOH B 88 388 388 HOH HOH . I 5 HOH B 89 389 389 HOH HOH . I 5 HOH B 90 390 390 HOH HOH . I 5 HOH B 91 391 391 HOH HOH . I 5 HOH B 92 392 392 HOH HOH . I 5 HOH B 93 393 393 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 3.818 _atom_site.Cartn_y 16.117 _atom_site.Cartn_z 25.579 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.14 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #