data_5NLM # _model_server_result.job_id y9MQJKN4GSXeTs1jSz_hVg _model_server_result.datetime_utc '2024-11-15 01:21:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nlm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 5NLM # _exptl.entry_id 5NLM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NLM _cell.length_a 121 _cell.length_b 172.82 _cell.length_c 48.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,J 1 1 B,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 54 A PRO 53 1_555 G MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? metalc ? metalc2 A O PRO 235 A PRO 234 1_555 G MG MG . A MG 1004 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc3 A O GLY 366 A GLY 365 1_555 F MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? metalc ? metalc4 D MG MG . A MG 1001 1_555 J O HOH . A HOH 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc5 B OE1 GLU 33 B GLU 32 1_555 I MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NLM _atom_sites.fract_transf_matrix[1][1] 0.008264 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020657 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IOS A 1 1000 1000 IOS INS . D 3 MG A 1 1001 1001 MG MG . E 3 MG A 1 1002 1002 MG MG . F 3 MG A 1 1003 1003 MG MG . G 3 MG A 1 1004 1004 MG MG . H 2 IOS B 1 1000 1000 IOS INS . I 3 MG B 1 1001 1001 MG MG . J 4 HOH A 1 1101 70 HOH HOH . J 4 HOH A 2 1102 75 HOH HOH . J 4 HOH A 3 1103 15 HOH HOH . J 4 HOH A 4 1104 89 HOH HOH . J 4 HOH A 5 1105 3 HOH HOH . J 4 HOH A 6 1106 88 HOH HOH . J 4 HOH A 7 1107 24 HOH HOH . J 4 HOH A 8 1108 39 HOH HOH . J 4 HOH A 9 1109 4 HOH HOH . J 4 HOH A 10 1110 31 HOH HOH . J 4 HOH A 11 1111 93 HOH HOH . J 4 HOH A 12 1112 14 HOH HOH . J 4 HOH A 13 1113 104 HOH HOH . J 4 HOH A 14 1114 121 HOH HOH . J 4 HOH A 15 1115 7 HOH HOH . J 4 HOH A 16 1116 28 HOH HOH . J 4 HOH A 17 1117 20 HOH HOH . J 4 HOH A 18 1118 73 HOH HOH . J 4 HOH A 19 1119 55 HOH HOH . J 4 HOH A 20 1120 68 HOH HOH . J 4 HOH A 21 1121 53 HOH HOH . J 4 HOH A 22 1122 11 HOH HOH . J 4 HOH A 23 1123 134 HOH HOH . J 4 HOH A 24 1124 54 HOH HOH . J 4 HOH A 25 1125 92 HOH HOH . J 4 HOH A 26 1126 30 HOH HOH . J 4 HOH A 27 1127 98 HOH HOH . J 4 HOH A 28 1128 25 HOH HOH . J 4 HOH A 29 1129 33 HOH HOH . J 4 HOH A 30 1130 91 HOH HOH . J 4 HOH A 31 1131 23 HOH HOH . J 4 HOH A 32 1132 72 HOH HOH . J 4 HOH A 33 1133 34 HOH HOH . J 4 HOH A 34 1134 86 HOH HOH . J 4 HOH A 35 1135 41 HOH HOH . J 4 HOH A 36 1136 96 HOH HOH . J 4 HOH A 37 1137 60 HOH HOH . J 4 HOH A 38 1138 1 HOH HOH . J 4 HOH A 39 1139 12 HOH HOH . J 4 HOH A 40 1140 10 HOH HOH . J 4 HOH A 41 1141 61 HOH HOH . J 4 HOH A 42 1142 100 HOH HOH . J 4 HOH A 43 1143 102 HOH HOH . J 4 HOH A 44 1144 46 HOH HOH . J 4 HOH A 45 1145 36 HOH HOH . J 4 HOH A 46 1146 49 HOH HOH . J 4 HOH A 47 1147 40 HOH HOH . J 4 HOH A 48 1148 21 HOH HOH . J 4 HOH A 49 1149 17 HOH HOH . J 4 HOH A 50 1150 112 HOH HOH . J 4 HOH A 51 1151 43 HOH HOH . J 4 HOH A 52 1152 6 HOH HOH . J 4 HOH A 53 1153 56 HOH HOH . J 4 HOH A 54 1154 109 HOH HOH . J 4 HOH A 55 1155 19 HOH HOH . J 4 HOH A 56 1156 18 HOH HOH . J 4 HOH A 57 1157 114 HOH HOH . J 4 HOH A 58 1158 76 HOH HOH . J 4 HOH A 59 1159 47 HOH HOH . J 4 HOH A 60 1160 95 HOH HOH . J 4 HOH A 61 1161 13 HOH HOH . J 4 HOH A 62 1162 103 HOH HOH . J 4 HOH A 63 1163 26 HOH HOH . J 4 HOH A 64 1164 69 HOH HOH . J 4 HOH A 65 1165 44 HOH HOH . J 4 HOH A 66 1166 116 HOH HOH . J 4 HOH A 67 1167 66 HOH HOH . J 4 HOH A 68 1168 94 HOH HOH . J 4 HOH A 69 1169 5 HOH HOH . J 4 HOH A 70 1170 117 HOH HOH . J 4 HOH A 71 1171 59 HOH HOH . J 4 HOH A 72 1172 22 HOH HOH . J 4 HOH A 73 1173 90 HOH HOH . J 4 HOH A 74 1174 42 HOH HOH . J 4 HOH A 75 1175 16 HOH HOH . J 4 HOH A 76 1176 82 HOH HOH . J 4 HOH A 77 1177 9 HOH HOH . J 4 HOH A 78 1178 113 HOH HOH . J 4 HOH A 79 1179 85 HOH HOH . J 4 HOH A 80 1180 29 HOH HOH . J 4 HOH A 81 1181 32 HOH HOH . J 4 HOH A 82 1182 52 HOH HOH . J 4 HOH A 83 1183 45 HOH HOH . J 4 HOH A 84 1184 65 HOH HOH . J 4 HOH A 85 1185 38 HOH HOH . J 4 HOH A 86 1186 122 HOH HOH . J 4 HOH A 87 1187 83 HOH HOH . J 4 HOH A 88 1188 62 HOH HOH . J 4 HOH A 89 1189 37 HOH HOH . J 4 HOH A 90 1190 78 HOH HOH . K 4 HOH B 1 1101 57 HOH HOH . K 4 HOH B 2 1102 87 HOH HOH . K 4 HOH B 3 1103 8 HOH HOH . K 4 HOH B 4 1104 50 HOH HOH . K 4 HOH B 5 1105 81 HOH HOH . K 4 HOH B 6 1106 77 HOH HOH . K 4 HOH B 7 1107 51 HOH HOH . K 4 HOH B 8 1108 2 HOH HOH . K 4 HOH B 9 1109 48 HOH HOH . K 4 HOH B 10 1110 84 HOH HOH . K 4 HOH B 11 1111 80 HOH HOH . K 4 HOH B 12 1112 130 HOH HOH . K 4 HOH B 13 1113 67 HOH HOH . K 4 HOH B 14 1114 71 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -17.646 _atom_site.Cartn_y 35.945 _atom_site.Cartn_z 2.161 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 88.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #