data_5NLX # _model_server_result.job_id NdF1vSD4Kz5HUHz2alqTwQ _model_server_result.datetime_utc '2024-11-22 18:39:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nlx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":506}' # _entry.id 5NLX # _exptl.entry_id 5NLX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NLX _cell.length_a 40.33 _cell.length_b 180.07 _cell.length_c 142.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NLX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 80 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 83 A CYS 83 1_555 A SG CYS 155 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf3 A SG CYS 86 A CYS 86 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? disulf ? disulf4 A SG CYS 364 A CYS 364 1_555 A SG CYS 367 A CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A OD1 ASP 61 A ASP 61 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc2 A OG SER 100 A SER 100 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc3 E NA NA . A NA 504 1_555 J O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc4 E NA NA . A NA 504 1_555 J O HOH . A HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc5 E NA NA . A NA 504 1_555 J O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 5NLX _atom_sites.fract_transf_matrix[1][1] 0.024795 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005553 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00701 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLA A 1 501 1 OLA OLA . C 2 OLA A 1 502 2 OLA OLA . D 2 OLA A 1 503 3 OLA OLA . E 3 NA A 1 504 1 NA NA . F 4 ZMA A 1 505 1 ZMA ZMA . G 5 CLR A 1 506 1 CLR XXX . H 5 CLR A 1 507 2 CLR XXX . I 5 CLR A 1 508 3 CLR XXX . J 6 HOH A 1 601 15 HOH HOH . J 6 HOH A 2 602 12 HOH HOH . J 6 HOH A 3 603 23 HOH HOH . J 6 HOH A 4 604 22 HOH HOH . J 6 HOH A 5 605 17 HOH HOH . J 6 HOH A 6 606 5 HOH HOH . J 6 HOH A 7 607 11 HOH HOH . J 6 HOH A 8 608 14 HOH HOH . J 6 HOH A 9 609 7 HOH HOH . J 6 HOH A 10 610 19 HOH HOH . J 6 HOH A 11 611 1 HOH HOH . J 6 HOH A 12 612 3 HOH HOH . J 6 HOH A 13 613 2 HOH HOH . J 6 HOH A 14 614 20 HOH HOH . J 6 HOH A 15 615 29 HOH HOH . J 6 HOH A 16 616 6 HOH HOH . J 6 HOH A 17 617 31 HOH HOH . J 6 HOH A 18 618 27 HOH HOH . J 6 HOH A 19 619 13 HOH HOH . J 6 HOH A 20 620 9 HOH HOH . J 6 HOH A 21 621 8 HOH HOH . J 6 HOH A 22 622 4 HOH HOH . J 6 HOH A 23 623 18 HOH HOH . J 6 HOH A 24 624 10 HOH HOH . J 6 HOH A 25 625 33 HOH HOH . J 6 HOH A 26 626 32 HOH HOH . J 6 HOH A 27 627 24 HOH HOH . J 6 HOH A 28 628 26 HOH HOH . J 6 HOH A 29 629 16 HOH HOH . J 6 HOH A 30 630 30 HOH HOH . J 6 HOH A 31 631 21 HOH HOH . J 6 HOH A 32 632 25 HOH HOH . J 6 HOH A 33 633 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . G 5 18.048 99.689 45.906 1 103.61 ? C1 CLR 506 A 1 HETATM 2 C C2 CLR . . . G 5 18.258 101.188 45.64 1 102.6 ? C2 CLR 506 A 1 HETATM 3 C C3 CLR . . . G 5 17.703 102.066 46.747 1 101.6 ? C3 CLR 506 A 1 HETATM 4 C C4 CLR . . . G 5 18.246 101.632 48.094 1 101.46 ? C4 CLR 506 A 1 HETATM 5 C C5 CLR . . . G 5 18.082 100.153 48.326 1 103.12 ? C5 CLR 506 A 1 HETATM 6 C C6 CLR . . . G 5 17.484 99.701 49.414 1 105.96 ? C6 CLR 506 A 1 HETATM 7 C C7 CLR . . . G 5 17.307 98.258 49.746 1 106.82 ? C7 CLR 506 A 1 HETATM 8 C C8 CLR . . . G 5 18.321 97.412 49.012 1 105.06 ? C8 CLR 506 A 1 HETATM 9 C C9 CLR . . . G 5 18.255 97.746 47.518 1 103.81 ? C9 CLR 506 A 1 HETATM 10 C C10 CLR . . . G 5 18.643 99.238 47.242 1 105.33 ? C10 CLR 506 A 1 HETATM 11 C C11 CLR . . . G 5 19.023 96.73 46.642 1 103.61 ? C11 CLR 506 A 1 HETATM 12 C C12 CLR . . . G 5 18.84 95.253 47.03 1 102.91 ? C12 CLR 506 A 1 HETATM 13 C C13 CLR . . . G 5 19.081 95.014 48.527 1 103.83 ? C13 CLR 506 A 1 HETATM 14 C C14 CLR . . . G 5 18.062 95.921 49.239 1 104.55 ? C14 CLR 506 A 1 HETATM 15 C C15 CLR . . . G 5 18.027 95.398 50.678 1 106.93 ? C15 CLR 506 A 1 HETATM 16 C C16 CLR . . . G 5 18.338 93.908 50.579 1 105.64 ? C16 CLR 506 A 1 HETATM 17 C C17 CLR . . . G 5 18.724 93.626 49.117 1 103.84 ? C17 CLR 506 A 1 HETATM 18 C C18 CLR . . . G 5 20.52 95.383 48.91 1 106.51 ? C18 CLR 506 A 1 HETATM 19 C C19 CLR . . . G 5 20.168 99.443 47.215 1 109.68 ? C19 CLR 506 A 1 HETATM 20 C C20 CLR . . . G 5 19.769 92.5 49.046 1 103.68 ? C20 CLR 506 A 1 HETATM 21 C C21 CLR . . . G 5 20.292 92.254 47.633 1 104.54 ? C21 CLR 506 A 1 HETATM 22 C C22 CLR . . . G 5 19.201 91.204 49.65 1 101.17 ? C22 CLR 506 A 1 HETATM 23 C C23 CLR . . . G 5 20.195 90.335 50.414 1 100.74 ? C23 CLR 506 A 1 HETATM 24 C C24 CLR . . . G 5 20.923 89.293 49.577 1 102.17 ? C24 CLR 506 A 1 HETATM 25 C C25 CLR . . . G 5 20.197 87.981 49.303 1 102.75 ? C25 CLR 506 A 1 HETATM 26 C C26 CLR . . . G 5 21.136 87.005 48.604 1 102.64 ? C26 CLR 506 A 1 HETATM 27 C C27 CLR . . . G 5 18.91 88.119 48.503 1 103.44 ? C27 CLR 506 A 1 HETATM 28 O O1 CLR . . . G 5 18.109 103.422 46.537 1 100.59 ? O1 CLR 506 A 1 HETATM 29 H H11 CLR . . . G 5 18.466 99.115 45.08 1 124.33 ? H11 CLR 506 A 1 HETATM 30 H H12 CLR . . . G 5 16.981 99.473 45.883 1 124.33 ? H12 CLR 506 A 1 HETATM 31 H H21 CLR . . . G 5 17.795 101.438 44.686 1 123.12 ? H21 CLR 506 A 1 HETATM 32 H H22 CLR . . . G 5 19.314 101.402 45.483 1 123.12 ? H22 CLR 506 A 1 HETATM 33 H H3 CLR . . . G 5 16.616 102.007 46.771 1 121.92 ? H3 CLR 506 A 1 HETATM 34 H H41 CLR . . . G 5 19.295 101.907 48.196 1 121.75 ? H41 CLR 506 A 1 HETATM 35 H H42 CLR . . . G 5 17.748 102.203 48.875 1 121.75 ? H42 CLR 506 A 1 HETATM 36 H H6 CLR . . . G 5 17.071 100.38 50.158 1 127.15 ? H6 CLR 506 A 1 HETATM 37 H H71 CLR . . . G 5 16.297 97.943 49.487 1 128.19 ? H71 CLR 506 A 1 HETATM 38 H H72 CLR . . . G 5 17.38 98.14 50.826 1 128.19 ? H72 CLR 506 A 1 HETATM 39 H H8 CLR . . . G 5 19.312 97.655 49.392 1 126.07 ? H8 CLR 506 A 1 HETATM 40 H H9 CLR . . . G 5 17.206 97.655 47.239 1 124.58 ? H9 CLR 506 A 1 HETATM 41 H H111 CLR . . . G 5 20.086 96.961 46.67 1 124.33 ? H111 CLR 506 A 1 HETATM 42 H H112 CLR . . . G 5 18.749 96.851 45.595 1 124.33 ? H112 CLR 506 A 1 HETATM 43 H H121 CLR . . . G 5 19.506 94.629 46.437 1 123.5 ? H121 CLR 506 A 1 HETATM 44 H H122 CLR . . . G 5 17.84 94.918 46.76 1 123.5 ? H122 CLR 506 A 1 HETATM 45 H H14 CLR . . . G 5 17.078 95.719 48.819 1 125.46 ? H14 CLR 506 A 1 HETATM 46 H H151 CLR . . . G 5 17.066 95.588 51.154 1 128.31 ? H151 CLR 506 A 1 HETATM 47 H H152 CLR . . . G 5 18.751 95.915 51.306 1 128.31 ? H152 CLR 506 A 1 HETATM 48 H H161 CLR . . . G 5 19.123 93.627 51.28 1 126.77 ? H161 CLR 506 A 1 HETATM 49 H H162 CLR . . . G 5 17.471 93.32 50.872 1 126.77 ? H162 CLR 506 A 1 HETATM 50 H H17 CLR . . . G 5 17.849 93.252 48.587 1 124.61 ? H17 CLR 506 A 1 HETATM 51 H H181 CLR . . . G 5 20.708 95.289 49.978 1 127.81 ? H181 CLR 506 A 1 HETATM 52 H H182 CLR . . . G 5 20.757 96.41 48.636 1 127.81 ? H182 CLR 506 A 1 HETATM 53 H H183 CLR . . . G 5 21.26 94.754 48.416 1 127.81 ? H183 CLR 506 A 1 HETATM 54 H H191 CLR . . . G 5 20.455 100.482 47.057 1 131.61 ? H191 CLR 506 A 1 HETATM 55 H H192 CLR . . . G 5 20.635 99.147 48.153 1 131.61 ? H192 CLR 506 A 1 HETATM 56 H H193 CLR . . . G 5 20.647 98.868 46.424 1 131.61 ? H193 CLR 506 A 1 HETATM 57 H H20 CLR . . . G 5 20.619 92.808 49.654 1 124.42 ? H20 CLR 506 A 1 HETATM 58 H H211 CLR . . . G 5 20.77 93.139 47.216 1 125.45 ? H211 CLR 506 A 1 HETATM 59 H H212 CLR . . . G 5 21.03 91.454 47.603 1 125.45 ? H212 CLR 506 A 1 HETATM 60 H H213 CLR . . . G 5 19.495 91.969 46.948 1 125.45 ? H213 CLR 506 A 1 HETATM 61 H H221 CLR . . . G 5 18.383 91.428 50.334 1 121.4 ? H221 CLR 506 A 1 HETATM 62 H H222 CLR . . . G 5 18.739 90.616 48.858 1 121.4 ? H222 CLR 506 A 1 HETATM 63 H H231 CLR . . . G 5 20.938 90.964 50.902 1 120.89 ? H231 CLR 506 A 1 HETATM 64 H H232 CLR . . . G 5 19.681 89.851 51.244 1 120.89 ? H232 CLR 506 A 1 HETATM 65 H H241 CLR . . . G 5 21.874 89.073 50.06 1 122.6 ? H241 CLR 506 A 1 HETATM 66 H H242 CLR . . . G 5 21.204 89.741 48.625 1 122.6 ? H242 CLR 506 A 1 HETATM 67 H H25 CLR . . . G 5 19.927 87.543 50.263 1 123.31 ? H25 CLR 506 A 1 HETATM 68 H H261 CLR . . . G 5 22.019 86.776 49.198 1 123.17 ? H261 CLR 506 A 1 HETATM 69 H H262 CLR . . . G 5 21.491 87.398 47.652 1 123.17 ? H262 CLR 506 A 1 HETATM 70 H H263 CLR . . . G 5 20.657 86.053 48.378 1 123.17 ? H263 CLR 506 A 1 HETATM 71 H H271 CLR . . . G 5 19.081 88.561 47.523 1 124.13 ? H271 CLR 506 A 1 HETATM 72 H H272 CLR . . . G 5 18.177 88.757 48.996 1 124.13 ? H272 CLR 506 A 1 HETATM 73 H H273 CLR . . . G 5 18.426 87.161 48.325 1 124.13 ? H273 CLR 506 A 1 HETATM 74 H H1 CLR . . . G 5 17.896 103.626 45.589 1 120.71 ? H1 CLR 506 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 74 #