data_5NLX # _model_server_result.job_id ZgEtqg1PQWz7-jR-WU2KXg _model_server_result.datetime_utc '2024-11-22 18:23:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nlx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 5NLX # _exptl.entry_id 5NLX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NLX _cell.length_a 40.33 _cell.length_b 180.07 _cell.length_c 142.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NLX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 80 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 83 A CYS 83 1_555 A SG CYS 155 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf3 A SG CYS 86 A CYS 86 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? disulf ? disulf4 A SG CYS 364 A CYS 364 1_555 A SG CYS 367 A CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A OD1 ASP 61 A ASP 61 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc2 A OG SER 100 A SER 100 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc3 E NA NA . A NA 504 1_555 J O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc4 E NA NA . A NA 504 1_555 J O HOH . A HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc5 E NA NA . A NA 504 1_555 J O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 5NLX _atom_sites.fract_transf_matrix[1][1] 0.024795 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005553 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00701 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLA A 1 501 1 OLA OLA . C 2 OLA A 1 502 2 OLA OLA . D 2 OLA A 1 503 3 OLA OLA . E 3 NA A 1 504 1 NA NA . F 4 ZMA A 1 505 1 ZMA ZMA . G 5 CLR A 1 506 1 CLR XXX . H 5 CLR A 1 507 2 CLR XXX . I 5 CLR A 1 508 3 CLR XXX . J 6 HOH A 1 601 15 HOH HOH . J 6 HOH A 2 602 12 HOH HOH . J 6 HOH A 3 603 23 HOH HOH . J 6 HOH A 4 604 22 HOH HOH . J 6 HOH A 5 605 17 HOH HOH . J 6 HOH A 6 606 5 HOH HOH . J 6 HOH A 7 607 11 HOH HOH . J 6 HOH A 8 608 14 HOH HOH . J 6 HOH A 9 609 7 HOH HOH . J 6 HOH A 10 610 19 HOH HOH . J 6 HOH A 11 611 1 HOH HOH . J 6 HOH A 12 612 3 HOH HOH . J 6 HOH A 13 613 2 HOH HOH . J 6 HOH A 14 614 20 HOH HOH . J 6 HOH A 15 615 29 HOH HOH . J 6 HOH A 16 616 6 HOH HOH . J 6 HOH A 17 617 31 HOH HOH . J 6 HOH A 18 618 27 HOH HOH . J 6 HOH A 19 619 13 HOH HOH . J 6 HOH A 20 620 9 HOH HOH . J 6 HOH A 21 621 8 HOH HOH . J 6 HOH A 22 622 4 HOH HOH . J 6 HOH A 23 623 18 HOH HOH . J 6 HOH A 24 624 10 HOH HOH . J 6 HOH A 25 625 33 HOH HOH . J 6 HOH A 26 626 32 HOH HOH . J 6 HOH A 27 627 24 HOH HOH . J 6 HOH A 28 628 26 HOH HOH . J 6 HOH A 29 629 16 HOH HOH . J 6 HOH A 30 630 30 HOH HOH . J 6 HOH A 31 631 21 HOH HOH . J 6 HOH A 32 632 25 HOH HOH . J 6 HOH A 33 633 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . H 5 23.214 98.406 49.361 1 92.37 ? C1 CLR 507 A 1 HETATM 2 C C2 CLR . . . H 5 22.988 99.916 49.429 1 91.74 ? C2 CLR 507 A 1 HETATM 3 C C3 CLR . . . H 5 21.916 100.258 50.435 1 90.25 ? C3 CLR 507 A 1 HETATM 4 C C4 CLR . . . H 5 22.279 99.705 51.802 1 92.82 ? C4 CLR 507 A 1 HETATM 5 C C5 CLR . . . H 5 22.621 98.229 51.77 1 93.47 ? C5 CLR 507 A 1 HETATM 6 C C6 CLR . . . H 5 22.087 97.39 52.654 1 93.77 ? C6 CLR 507 A 1 HETATM 7 C C7 CLR . . . H 5 22.373 95.92 52.733 1 96.11 ? C7 CLR 507 A 1 HETATM 8 C C8 CLR . . . H 5 23.612 95.512 51.933 1 95.57 ? C8 CLR 507 A 1 HETATM 9 C C9 CLR . . . H 5 23.613 96.237 50.574 1 93.52 ? C9 CLR 507 A 1 HETATM 10 C C10 CLR . . . H 5 23.625 97.791 50.708 1 94.08 ? C10 CLR 507 A 1 HETATM 11 C C11 CLR . . . H 5 24.681 95.701 49.608 1 92.96 ? C11 CLR 507 A 1 HETATM 12 C C12 CLR . . . H 5 24.689 94.182 49.48 1 92.74 ? C12 CLR 507 A 1 HETATM 13 C C13 CLR . . . H 5 24.823 93.492 50.845 1 94.98 ? C13 CLR 507 A 1 HETATM 14 C C14 CLR . . . H 5 23.636 93.99 51.702 1 96.52 ? C14 CLR 507 A 1 HETATM 15 C C15 CLR . . . H 5 23.623 93.037 52.905 1 95.88 ? C15 CLR 507 A 1 HETATM 16 C C16 CLR . . . H 5 24.073 91.688 52.317 1 96.4 ? C16 CLR 507 A 1 HETATM 17 C C17 CLR . . . H 5 24.572 91.964 50.879 1 96.54 ? C17 CLR 507 A 1 HETATM 18 C C18 CLR . . . H 5 26.179 93.833 51.488 1 93.23 ? C18 CLR 507 A 1 HETATM 19 C C19 CLR . . . H 5 25.017 98.322 51.115 1 95.52 ? C19 CLR 507 A 1 HETATM 20 C C20 CLR . . . H 5 25.718 91.017 50.474 1 96.89 ? C20 CLR 507 A 1 HETATM 21 C C21 CLR . . . H 5 26.265 91.297 49.076 1 98.26 ? C21 CLR 507 A 1 HETATM 22 C C22 CLR . . . H 5 25.308 89.543 50.599 1 97.57 ? C22 CLR 507 A 1 HETATM 23 C C23 CLR . . . H 5 26.464 88.576 50.438 1 99.56 ? C23 CLR 507 A 1 HETATM 24 C C24 CLR . . . H 5 26.046 87.133 50.486 1 101.22 ? C24 CLR 507 A 1 HETATM 25 C C25 CLR . . . H 5 25.384 86.714 51.75 1 104.12 ? C25 CLR 507 A 1 HETATM 26 C C26 CLR . . . H 5 26.128 87.202 52.988 1 104.78 ? C26 CLR 507 A 1 HETATM 27 C C27 CLR . . . H 5 25.264 85.206 51.749 1 104.72 ? C27 CLR 507 A 1 HETATM 28 O O1 CLR . . . H 5 21.798 101.676 50.502 1 87.26 ? O1 CLR 507 A 1 HETATM 29 H H11 CLR . . . H 5 23.956 98.189 48.595 1 110.84 ? H11 CLR 507 A 1 HETATM 30 H H12 CLR . . . H 5 22.301 97.931 49.003 1 110.84 ? H12 CLR 507 A 1 HETATM 31 H H21 CLR . . . H 5 22.721 100.278 48.437 1 110.09 ? H21 CLR 507 A 1 HETATM 32 H H22 CLR . . . H 5 23.916 100.435 49.664 1 110.09 ? H22 CLR 507 A 1 HETATM 33 H H3 CLR . . . H 5 20.963 99.829 50.129 1 108.3 ? H3 CLR 507 A 1 HETATM 34 H H41 CLR . . . H 5 23.107 100.264 52.237 1 111.39 ? H41 CLR 507 A 1 HETATM 35 H H42 CLR . . . H 5 21.453 99.893 52.486 1 111.39 ? H42 CLR 507 A 1 HETATM 36 H H6 CLR . . . H 5 21.379 97.739 53.405 1 112.53 ? H6 CLR 507 A 1 HETATM 37 H H71 CLR . . . H 5 21.506 95.366 52.376 1 115.33 ? H71 CLR 507 A 1 HETATM 38 H H72 CLR . . . H 5 22.467 95.651 53.784 1 115.33 ? H72 CLR 507 A 1 HETATM 39 H H8 CLR . . . H 5 24.5 95.796 52.497 1 114.68 ? H8 CLR 507 A 1 HETATM 40 H H9 CLR . . . H 5 22.655 95.994 50.118 1 112.22 ? H9 CLR 507 A 1 HETATM 41 H H111 CLR . . . H 5 25.667 96.027 49.934 1 111.56 ? H111 CLR 507 A 1 HETATM 42 H H112 CLR . . . H 5 24.56 96.14 48.619 1 111.56 ? H112 CLR 507 A 1 HETATM 43 H H121 CLR . . . H 5 25.495 93.869 48.819 1 111.29 ? H121 CLR 507 A 1 HETATM 44 H H122 CLR . . . H 5 23.781 93.844 48.983 1 111.29 ? H122 CLR 507 A 1 HETATM 45 H H14 CLR . . . H 5 22.723 93.772 51.151 1 115.83 ? H14 CLR 507 A 1 HETATM 46 H H151 CLR . . . H 5 22.642 92.982 53.374 1 115.06 ? H151 CLR 507 A 1 HETATM 47 H H152 CLR . . . H 5 24.293 93.375 53.694 1 115.06 ? H152 CLR 507 A 1 HETATM 48 H H161 CLR . . . H 5 24.835 91.226 52.943 1 115.68 ? H161 CLR 507 A 1 HETATM 49 H H162 CLR . . . H 5 23.244 90.982 52.312 1 115.68 ? H162 CLR 507 A 1 HETATM 50 H H17 CLR . . . H 5 23.762 91.75 50.184 1 115.85 ? H17 CLR 507 A 1 HETATM 51 H H181 CLR . . . H 5 26.301 93.386 52.474 1 111.87 ? H181 CLR 507 A 1 HETATM 52 H H182 CLR . . . H 5 26.307 94.907 51.609 1 111.87 ? H182 CLR 507 A 1 HETATM 53 H H183 CLR . . . H 5 27.024 93.488 50.894 1 111.87 ? H183 CLR 507 A 1 HETATM 54 H H191 CLR . . . H 5 25.045 99.405 51.225 1 114.62 ? H191 CLR 507 A 1 HETATM 55 H H192 CLR . . . H 5 25.341 97.92 52.074 1 114.62 ? H192 CLR 507 A 1 HETATM 56 H H193 CLR . . . H 5 25.785 98.067 50.385 1 114.62 ? H193 CLR 507 A 1 HETATM 57 H H20 CLR . . . H 5 26.535 91.191 51.173 1 116.26 ? H20 CLR 507 A 1 HETATM 58 H H211 CLR . . . H 5 26.661 92.308 48.988 1 117.92 ? H211 CLR 507 A 1 HETATM 59 H H212 CLR . . . H 5 27.073 90.618 48.808 1 117.92 ? H212 CLR 507 A 1 HETATM 60 H H213 CLR . . . H 5 25.499 91.187 48.309 1 117.92 ? H213 CLR 507 A 1 HETATM 61 H H221 CLR . . . H 5 24.849 89.346 51.567 1 117.08 ? H221 CLR 507 A 1 HETATM 62 H H222 CLR . . . H 5 24.531 89.318 49.87 1 117.08 ? H222 CLR 507 A 1 HETATM 63 H H231 CLR . . . H 5 26.982 88.76 49.498 1 119.48 ? H231 CLR 507 A 1 HETATM 64 H H232 CLR . . . H 5 27.216 88.778 51.199 1 119.48 ? H232 CLR 507 A 1 HETATM 65 H H241 CLR . . . H 5 26.921 86.508 50.313 1 121.47 ? H241 CLR 507 A 1 HETATM 66 H H242 CLR . . . H 5 25.384 86.92 49.648 1 121.47 ? H242 CLR 507 A 1 HETATM 67 H H25 CLR . . . H 5 24.377 87.128 51.77 1 124.95 ? H25 CLR 507 A 1 HETATM 68 H H261 CLR . . . H 5 26.203 88.287 53.03 1 125.73 ? H261 CLR 507 A 1 HETATM 69 H H262 CLR . . . H 5 27.145 86.815 53.027 1 125.73 ? H262 CLR 507 A 1 HETATM 70 H H263 CLR . . . H 5 25.649 86.887 53.914 1 125.73 ? H263 CLR 507 A 1 HETATM 71 H H271 CLR . . . H 5 26.234 84.716 51.685 1 125.66 ? H271 CLR 507 A 1 HETATM 72 H H272 CLR . . . H 5 24.683 84.833 50.907 1 125.66 ? H272 CLR 507 A 1 HETATM 73 H H273 CLR . . . H 5 24.791 84.826 52.653 1 125.66 ? H273 CLR 507 A 1 HETATM 74 H H1 CLR . . . H 5 20.829 101.864 50.61 1 104.71 ? H1 CLR 507 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 74 #