data_5NM2 # _model_server_result.job_id vXUz8LSPsNSBFDlmAeRMSg _model_server_result.datetime_utc '2024-10-19 11:29:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nm2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 5NM2 # _exptl.entry_id 5NM2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NM2 _cell.length_a 39.428 _cell.length_b 179.599 _cell.length_c 139.847 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NM2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc1 A OD1 ASP 61 A ASP 52 1_555 B NA NA . A NA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc2 A OG SER 100 A SER 91 1_555 B NA NA . A NA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc3 B NA NA . A NA 1201 1_555 Z O HOH . A HOH 1320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc4 B NA NA . A NA 1201 1_555 Z O HOH . A HOH 1337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc5 B NA NA . A NA 1201 1_555 Z O HOH . A HOH 1383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NM2 _atom_sites.fract_transf_matrix[1][1] 0.025363 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007151 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1201 2400 NA NA . C 3 ZMA A 1 1202 2401 ZMA ZMA . D 4 OLA A 1 1203 2406 OLA OLA . E 4 OLA A 1 1204 2407 OLA OLA . F 4 OLA A 1 1205 2409 OLA OLA . G 4 OLA A 1 1206 2410 OLA OLA . H 4 OLA A 1 1207 2412 OLA OLA . I 4 OLA A 1 1208 2413 OLA OLA . J 4 OLA A 1 1209 2416 OLA OLA . K 4 OLA A 1 1210 2417 OLA OLA . L 4 OLA A 1 1211 2418 OLA OLA . M 4 OLA A 1 1212 2419 OLA OLA . N 4 OLA A 1 1213 2420 OLA OLA . O 4 OLA A 1 1214 2421 OLA OLA . P 4 OLA A 1 1215 2422 OLA OLA . Q 4 OLA A 1 1216 2423 OLA OLA . R 4 OLA A 1 1217 2424 OLA OLA . S 5 OLB A 1 1218 2427 OLB OLB . T 5 OLB A 1 1219 2428 OLB OLB . U 6 OLC A 1 1220 2429 OLC OLC . V 6 OLC A 1 1221 2430 OLC OLC . W 7 CLR A 1 1222 1 CLR XXX . X 7 CLR A 1 1223 2 CLR XXX . Y 7 CLR A 1 1224 3 CLR XXX . Z 8 HOH A 1 1301 84 HOH HOH . Z 8 HOH A 2 1302 121 HOH HOH . Z 8 HOH A 3 1303 78 HOH HOH . Z 8 HOH A 4 1304 102 HOH HOH . Z 8 HOH A 5 1305 87 HOH HOH . Z 8 HOH A 6 1306 72 HOH HOH . Z 8 HOH A 7 1307 112 HOH HOH . Z 8 HOH A 8 1308 51 HOH HOH . Z 8 HOH A 9 1309 116 HOH HOH . Z 8 HOH A 10 1310 60 HOH HOH . Z 8 HOH A 11 1311 67 HOH HOH . Z 8 HOH A 12 1312 56 HOH HOH . Z 8 HOH A 13 1313 61 HOH HOH . Z 8 HOH A 14 1314 21 HOH HOH . Z 8 HOH A 15 1315 34 HOH HOH . Z 8 HOH A 16 1316 66 HOH HOH . Z 8 HOH A 17 1317 5 HOH HOH . Z 8 HOH A 18 1318 65 HOH HOH . Z 8 HOH A 19 1319 4 HOH HOH . Z 8 HOH A 20 1320 14 HOH HOH . Z 8 HOH A 21 1321 62 HOH HOH . Z 8 HOH A 22 1322 100 HOH HOH . Z 8 HOH A 23 1323 24 HOH HOH . Z 8 HOH A 24 1324 37 HOH HOH . Z 8 HOH A 25 1325 32 HOH HOH . Z 8 HOH A 26 1326 33 HOH HOH . Z 8 HOH A 27 1327 25 HOH HOH . Z 8 HOH A 28 1328 2 HOH HOH . Z 8 HOH A 29 1329 89 HOH HOH . Z 8 HOH A 30 1330 45 HOH HOH . Z 8 HOH A 31 1331 15 HOH HOH . Z 8 HOH A 32 1332 23 HOH HOH . Z 8 HOH A 33 1333 1 HOH HOH . Z 8 HOH A 34 1334 7 HOH HOH . Z 8 HOH A 35 1335 124 HOH HOH . Z 8 HOH A 36 1336 49 HOH HOH . Z 8 HOH A 37 1337 94 HOH HOH . Z 8 HOH A 38 1338 22 HOH HOH . Z 8 HOH A 39 1339 10 HOH HOH . Z 8 HOH A 40 1340 26 HOH HOH . Z 8 HOH A 41 1341 8 HOH HOH . Z 8 HOH A 42 1342 16 HOH HOH . Z 8 HOH A 43 1343 90 HOH HOH . Z 8 HOH A 44 1344 88 HOH HOH . Z 8 HOH A 45 1345 70 HOH HOH . Z 8 HOH A 46 1346 20 HOH HOH . Z 8 HOH A 47 1347 63 HOH HOH . Z 8 HOH A 48 1348 11 HOH HOH . Z 8 HOH A 49 1349 36 HOH HOH . Z 8 HOH A 50 1350 54 HOH HOH . Z 8 HOH A 51 1351 81 HOH HOH . Z 8 HOH A 52 1352 80 HOH HOH . Z 8 HOH A 53 1353 9 HOH HOH . Z 8 HOH A 54 1354 50 HOH HOH . Z 8 HOH A 55 1355 6 HOH HOH . Z 8 HOH A 56 1356 105 HOH HOH . Z 8 HOH A 57 1357 41 HOH HOH . Z 8 HOH A 58 1358 29 HOH HOH . Z 8 HOH A 59 1359 71 HOH HOH . Z 8 HOH A 60 1360 27 HOH HOH . Z 8 HOH A 61 1361 59 HOH HOH . Z 8 HOH A 62 1362 82 HOH HOH . Z 8 HOH A 63 1363 53 HOH HOH . Z 8 HOH A 64 1364 42 HOH HOH . Z 8 HOH A 65 1365 98 HOH HOH . Z 8 HOH A 66 1366 64 HOH HOH . Z 8 HOH A 67 1367 38 HOH HOH . Z 8 HOH A 68 1368 46 HOH HOH . Z 8 HOH A 69 1369 28 HOH HOH . Z 8 HOH A 70 1370 44 HOH HOH . Z 8 HOH A 71 1371 30 HOH HOH . Z 8 HOH A 72 1372 19 HOH HOH . Z 8 HOH A 73 1373 3 HOH HOH . Z 8 HOH A 74 1374 85 HOH HOH . Z 8 HOH A 75 1375 118 HOH HOH . Z 8 HOH A 76 1376 12 HOH HOH . Z 8 HOH A 77 1377 57 HOH HOH . Z 8 HOH A 78 1378 119 HOH HOH . Z 8 HOH A 79 1379 126 HOH HOH . Z 8 HOH A 80 1380 58 HOH HOH . Z 8 HOH A 81 1381 92 HOH HOH . Z 8 HOH A 82 1382 75 HOH HOH . Z 8 HOH A 83 1383 132 HOH HOH . Z 8 HOH A 84 1384 73 HOH HOH . Z 8 HOH A 85 1385 35 HOH HOH . Z 8 HOH A 86 1386 18 HOH HOH . Z 8 HOH A 87 1387 123 HOH HOH . Z 8 HOH A 88 1388 43 HOH HOH . Z 8 HOH A 89 1389 17 HOH HOH . Z 8 HOH A 90 1390 99 HOH HOH . Z 8 HOH A 91 1391 13 HOH HOH . Z 8 HOH A 92 1392 39 HOH HOH . Z 8 HOH A 93 1393 48 HOH HOH . Z 8 HOH A 94 1394 52 HOH HOH . Z 8 HOH A 95 1395 114 HOH HOH . Z 8 HOH A 96 1396 125 HOH HOH . Z 8 HOH A 97 1397 55 HOH HOH . Z 8 HOH A 98 1398 68 HOH HOH . Z 8 HOH A 99 1399 79 HOH HOH . Z 8 HOH A 100 1400 95 HOH HOH . Z 8 HOH A 101 1401 120 HOH HOH . Z 8 HOH A 102 1402 74 HOH HOH . Z 8 HOH A 103 1403 31 HOH HOH . Z 8 HOH A 104 1404 69 HOH HOH . Z 8 HOH A 105 1405 86 HOH HOH . Z 8 HOH A 106 1406 47 HOH HOH . Z 8 HOH A 107 1407 77 HOH HOH . Z 8 HOH A 108 1408 117 HOH HOH . Z 8 HOH A 109 1409 111 HOH HOH . Z 8 HOH A 110 1410 115 HOH HOH . Z 8 HOH A 111 1411 96 HOH HOH . Z 8 HOH A 112 1412 76 HOH HOH . Z 8 HOH A 113 1413 40 HOH HOH . Z 8 HOH A 114 1414 109 HOH HOH . Z 8 HOH A 115 1415 131 HOH HOH . Z 8 HOH A 116 1416 106 HOH HOH . Z 8 HOH A 117 1417 130 HOH HOH . Z 8 HOH A 118 1418 91 HOH HOH . Z 8 HOH A 119 1419 93 HOH HOH . Z 8 HOH A 120 1420 83 HOH HOH . Z 8 HOH A 121 1421 110 HOH HOH . Z 8 HOH A 122 1422 103 HOH HOH . Z 8 HOH A 123 1423 97 HOH HOH . Z 8 HOH A 124 1424 101 HOH HOH . Z 8 HOH A 125 1425 108 HOH HOH . Z 8 HOH A 126 1426 122 HOH HOH . Z 8 HOH A 127 1427 129 HOH HOH . Z 8 HOH A 128 1428 107 HOH HOH . Z 8 HOH A 129 1429 104 HOH HOH . Z 8 HOH A 130 1430 113 HOH HOH . Z 8 HOH A 131 1431 128 HOH HOH . Z 8 HOH A 132 1432 127 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -3.731 _atom_site.Cartn_y -8.753 _atom_site.Cartn_z 16.426 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #