data_5NM2 # _model_server_result.job_id ae10aJ0g5tFAO4TQZ8sm3w _model_server_result.datetime_utc '2024-11-26 12:08:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nm2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1205}' # _entry.id 5NM2 # _exptl.entry_id 5NM2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.461 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OLEIC ACID' _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NM2 _cell.length_a 39.428 _cell.length_b 179.599 _cell.length_c 139.847 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NM2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc1 A OD1 ASP 61 A ASP 52 1_555 B NA NA . A NA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc2 A OG SER 100 A SER 91 1_555 B NA NA . A NA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc3 B NA NA . A NA 1201 1_555 Z O HOH . A HOH 1320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc4 B NA NA . A NA 1201 1_555 Z O HOH . A HOH 1337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc5 B NA NA . A NA 1201 1_555 Z O HOH . A HOH 1383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? # _chem_comp.formula 'C18 H34 O2' _chem_comp.formula_weight 282.461 _chem_comp.id OLA _chem_comp.mon_nstd_flag . _chem_comp.name 'OLEIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 OLA doub 314 n n C1 O2 OLA sing 315 n n C1 C2 OLA sing 316 n n O2 HO2 OLA sing 317 n n C2 C3 OLA sing 318 n n C2 H21 OLA sing 319 n n C2 H22 OLA sing 320 n n C3 C4 OLA sing 321 n n C3 H31 OLA sing 322 n n C3 H32 OLA sing 323 n n C4 C5 OLA sing 324 n n C4 H41 OLA sing 325 n n C4 H42 OLA sing 326 n n C5 C6 OLA sing 327 n n C5 H51 OLA sing 328 n n C5 H52 OLA sing 329 n n C6 C7 OLA sing 330 n n C6 H61 OLA sing 331 n n C6 H62 OLA sing 332 n n C7 C8 OLA sing 333 n n C7 H71 OLA sing 334 n n C7 H72 OLA sing 335 n n C8 C9 OLA sing 336 n n C8 H81 OLA sing 337 n n C8 H82 OLA sing 338 n n C9 C10 OLA doub 339 z n C9 H9 OLA sing 340 n n C10 C11 OLA sing 341 n n C10 H10 OLA sing 342 n n C11 C12 OLA sing 343 n n C11 H111 OLA sing 344 n n C11 H112 OLA sing 345 n n C12 C13 OLA sing 346 n n C12 H121 OLA sing 347 n n C12 H122 OLA sing 348 n n C13 C14 OLA sing 349 n n C13 H131 OLA sing 350 n n C13 H132 OLA sing 351 n n C14 C15 OLA sing 352 n n C14 H141 OLA sing 353 n n C14 H142 OLA sing 354 n n C15 C16 OLA sing 355 n n C15 H151 OLA sing 356 n n C15 H152 OLA sing 357 n n C16 C17 OLA sing 358 n n C16 H161 OLA sing 359 n n C16 H162 OLA sing 360 n n C17 C18 OLA sing 361 n n C17 H171 OLA sing 362 n n C17 H172 OLA sing 363 n n C18 H181 OLA sing 364 n n C18 H182 OLA sing 365 n n C18 H183 OLA sing 366 n n # _atom_sites.entry_id 5NM2 _atom_sites.fract_transf_matrix[1][1] 0.025363 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007151 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1201 2400 NA NA . C 3 ZMA A 1 1202 2401 ZMA ZMA . D 4 OLA A 1 1203 2406 OLA OLA . E 4 OLA A 1 1204 2407 OLA OLA . F 4 OLA A 1 1205 2409 OLA OLA . G 4 OLA A 1 1206 2410 OLA OLA . H 4 OLA A 1 1207 2412 OLA OLA . I 4 OLA A 1 1208 2413 OLA OLA . J 4 OLA A 1 1209 2416 OLA OLA . K 4 OLA A 1 1210 2417 OLA OLA . L 4 OLA A 1 1211 2418 OLA OLA . M 4 OLA A 1 1212 2419 OLA OLA . N 4 OLA A 1 1213 2420 OLA OLA . O 4 OLA A 1 1214 2421 OLA OLA . P 4 OLA A 1 1215 2422 OLA OLA . Q 4 OLA A 1 1216 2423 OLA OLA . R 4 OLA A 1 1217 2424 OLA OLA . S 5 OLB A 1 1218 2427 OLB OLB . T 5 OLB A 1 1219 2428 OLB OLB . U 6 OLC A 1 1220 2429 OLC OLC . V 6 OLC A 1 1221 2430 OLC OLC . W 7 CLR A 1 1222 1 CLR XXX . X 7 CLR A 1 1223 2 CLR XXX . Y 7 CLR A 1 1224 3 CLR XXX . Z 8 HOH A 1 1301 84 HOH HOH . Z 8 HOH A 2 1302 121 HOH HOH . Z 8 HOH A 3 1303 78 HOH HOH . Z 8 HOH A 4 1304 102 HOH HOH . Z 8 HOH A 5 1305 87 HOH HOH . Z 8 HOH A 6 1306 72 HOH HOH . Z 8 HOH A 7 1307 112 HOH HOH . Z 8 HOH A 8 1308 51 HOH HOH . Z 8 HOH A 9 1309 116 HOH HOH . Z 8 HOH A 10 1310 60 HOH HOH . Z 8 HOH A 11 1311 67 HOH HOH . Z 8 HOH A 12 1312 56 HOH HOH . Z 8 HOH A 13 1313 61 HOH HOH . Z 8 HOH A 14 1314 21 HOH HOH . Z 8 HOH A 15 1315 34 HOH HOH . Z 8 HOH A 16 1316 66 HOH HOH . Z 8 HOH A 17 1317 5 HOH HOH . Z 8 HOH A 18 1318 65 HOH HOH . Z 8 HOH A 19 1319 4 HOH HOH . Z 8 HOH A 20 1320 14 HOH HOH . Z 8 HOH A 21 1321 62 HOH HOH . Z 8 HOH A 22 1322 100 HOH HOH . Z 8 HOH A 23 1323 24 HOH HOH . Z 8 HOH A 24 1324 37 HOH HOH . Z 8 HOH A 25 1325 32 HOH HOH . Z 8 HOH A 26 1326 33 HOH HOH . Z 8 HOH A 27 1327 25 HOH HOH . Z 8 HOH A 28 1328 2 HOH HOH . Z 8 HOH A 29 1329 89 HOH HOH . Z 8 HOH A 30 1330 45 HOH HOH . Z 8 HOH A 31 1331 15 HOH HOH . Z 8 HOH A 32 1332 23 HOH HOH . Z 8 HOH A 33 1333 1 HOH HOH . Z 8 HOH A 34 1334 7 HOH HOH . Z 8 HOH A 35 1335 124 HOH HOH . Z 8 HOH A 36 1336 49 HOH HOH . Z 8 HOH A 37 1337 94 HOH HOH . Z 8 HOH A 38 1338 22 HOH HOH . Z 8 HOH A 39 1339 10 HOH HOH . Z 8 HOH A 40 1340 26 HOH HOH . Z 8 HOH A 41 1341 8 HOH HOH . Z 8 HOH A 42 1342 16 HOH HOH . Z 8 HOH A 43 1343 90 HOH HOH . Z 8 HOH A 44 1344 88 HOH HOH . Z 8 HOH A 45 1345 70 HOH HOH . Z 8 HOH A 46 1346 20 HOH HOH . Z 8 HOH A 47 1347 63 HOH HOH . Z 8 HOH A 48 1348 11 HOH HOH . Z 8 HOH A 49 1349 36 HOH HOH . Z 8 HOH A 50 1350 54 HOH HOH . Z 8 HOH A 51 1351 81 HOH HOH . Z 8 HOH A 52 1352 80 HOH HOH . Z 8 HOH A 53 1353 9 HOH HOH . Z 8 HOH A 54 1354 50 HOH HOH . Z 8 HOH A 55 1355 6 HOH HOH . Z 8 HOH A 56 1356 105 HOH HOH . Z 8 HOH A 57 1357 41 HOH HOH . Z 8 HOH A 58 1358 29 HOH HOH . Z 8 HOH A 59 1359 71 HOH HOH . Z 8 HOH A 60 1360 27 HOH HOH . Z 8 HOH A 61 1361 59 HOH HOH . Z 8 HOH A 62 1362 82 HOH HOH . Z 8 HOH A 63 1363 53 HOH HOH . Z 8 HOH A 64 1364 42 HOH HOH . Z 8 HOH A 65 1365 98 HOH HOH . Z 8 HOH A 66 1366 64 HOH HOH . Z 8 HOH A 67 1367 38 HOH HOH . Z 8 HOH A 68 1368 46 HOH HOH . Z 8 HOH A 69 1369 28 HOH HOH . Z 8 HOH A 70 1370 44 HOH HOH . Z 8 HOH A 71 1371 30 HOH HOH . Z 8 HOH A 72 1372 19 HOH HOH . Z 8 HOH A 73 1373 3 HOH HOH . Z 8 HOH A 74 1374 85 HOH HOH . Z 8 HOH A 75 1375 118 HOH HOH . Z 8 HOH A 76 1376 12 HOH HOH . Z 8 HOH A 77 1377 57 HOH HOH . Z 8 HOH A 78 1378 119 HOH HOH . Z 8 HOH A 79 1379 126 HOH HOH . Z 8 HOH A 80 1380 58 HOH HOH . Z 8 HOH A 81 1381 92 HOH HOH . Z 8 HOH A 82 1382 75 HOH HOH . Z 8 HOH A 83 1383 132 HOH HOH . Z 8 HOH A 84 1384 73 HOH HOH . Z 8 HOH A 85 1385 35 HOH HOH . Z 8 HOH A 86 1386 18 HOH HOH . Z 8 HOH A 87 1387 123 HOH HOH . Z 8 HOH A 88 1388 43 HOH HOH . Z 8 HOH A 89 1389 17 HOH HOH . Z 8 HOH A 90 1390 99 HOH HOH . Z 8 HOH A 91 1391 13 HOH HOH . Z 8 HOH A 92 1392 39 HOH HOH . Z 8 HOH A 93 1393 48 HOH HOH . Z 8 HOH A 94 1394 52 HOH HOH . Z 8 HOH A 95 1395 114 HOH HOH . Z 8 HOH A 96 1396 125 HOH HOH . Z 8 HOH A 97 1397 55 HOH HOH . Z 8 HOH A 98 1398 68 HOH HOH . Z 8 HOH A 99 1399 79 HOH HOH . Z 8 HOH A 100 1400 95 HOH HOH . Z 8 HOH A 101 1401 120 HOH HOH . Z 8 HOH A 102 1402 74 HOH HOH . Z 8 HOH A 103 1403 31 HOH HOH . Z 8 HOH A 104 1404 69 HOH HOH . Z 8 HOH A 105 1405 86 HOH HOH . Z 8 HOH A 106 1406 47 HOH HOH . Z 8 HOH A 107 1407 77 HOH HOH . Z 8 HOH A 108 1408 117 HOH HOH . Z 8 HOH A 109 1409 111 HOH HOH . Z 8 HOH A 110 1410 115 HOH HOH . Z 8 HOH A 111 1411 96 HOH HOH . Z 8 HOH A 112 1412 76 HOH HOH . Z 8 HOH A 113 1413 40 HOH HOH . Z 8 HOH A 114 1414 109 HOH HOH . Z 8 HOH A 115 1415 131 HOH HOH . Z 8 HOH A 116 1416 106 HOH HOH . Z 8 HOH A 117 1417 130 HOH HOH . Z 8 HOH A 118 1418 91 HOH HOH . Z 8 HOH A 119 1419 93 HOH HOH . Z 8 HOH A 120 1420 83 HOH HOH . Z 8 HOH A 121 1421 110 HOH HOH . Z 8 HOH A 122 1422 103 HOH HOH . Z 8 HOH A 123 1423 97 HOH HOH . Z 8 HOH A 124 1424 101 HOH HOH . Z 8 HOH A 125 1425 108 HOH HOH . Z 8 HOH A 126 1426 122 HOH HOH . Z 8 HOH A 127 1427 129 HOH HOH . Z 8 HOH A 128 1428 107 HOH HOH . Z 8 HOH A 129 1429 104 HOH HOH . Z 8 HOH A 130 1430 113 HOH HOH . Z 8 HOH A 131 1431 128 HOH HOH . Z 8 HOH A 132 1432 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLA . . . F 4 -0.637 -22.576 28.017 1 78.36 ? C1 OLA 1205 A 1 HETATM 2 O O1 OLA . . . F 4 -0.821 -22.348 26.809 1 83.88 ? O1 OLA 1205 A 1 HETATM 3 O O2 OLA . . . F 4 -0.99 -23.686 28.459 1 82.15 ? O2 OLA 1205 A 1 HETATM 4 C C2 OLA . . . F 4 -0.009 -21.545 28.916 1 67.41 ? C2 OLA 1205 A 1 HETATM 5 C C3 OLA . . . F 4 -0.524 -20.167 28.559 1 61.17 ? C3 OLA 1205 A 1 HETATM 6 C C4 OLA . . . F 4 0.306 -19.087 29.242 1 55.38 ? C4 OLA 1205 A 1 HETATM 7 C C5 OLA . . . F 4 -0.396 -17.737 29.145 1 51.93 ? C5 OLA 1205 A 1 HETATM 8 C C6 OLA . . . F 4 0.59 -16.59 29.065 1 54.4 ? C6 OLA 1205 A 1 HETATM 9 C C7 OLA . . . F 4 -0.012 -15.32 28.508 1 58.76 ? C7 OLA 1205 A 1 HETATM 10 H H21 OLA . . . F 4 1.075 -21.572 28.804 1 80.89 ? H21 OLA 1205 A 1 HETATM 11 H H22 OLA . . . F 4 -0.248 -21.769 29.955 1 80.89 ? H22 OLA 1205 A 1 HETATM 12 H H31 OLA . . . F 4 -0.481 -20.031 27.479 1 73.4 ? H31 OLA 1205 A 1 HETATM 13 H H32 OLA . . . F 4 -1.565 -20.077 28.868 1 73.4 ? H32 OLA 1205 A 1 HETATM 14 H H41 OLA . . . F 4 0.454 -19.347 30.29 1 66.45 ? H41 OLA 1205 A 1 HETATM 15 H H42 OLA . . . F 4 1.286 -19.025 28.768 1 66.45 ? H42 OLA 1205 A 1 HETATM 16 H H51 OLA . . . F 4 -1.033 -17.726 28.261 1 62.31 ? H51 OLA 1205 A 1 HETATM 17 H H52 OLA . . . F 4 -1.036 -17.601 30.017 1 62.31 ? H52 OLA 1205 A 1 HETATM 18 H H61 OLA . . . F 4 0.981 -16.389 30.062 1 65.28 ? H61 OLA 1205 A 1 HETATM 19 H H62 OLA . . . F 4 1.43 -16.888 28.438 1 65.28 ? H62 OLA 1205 A 1 HETATM 20 H H71 OLA . . . F 4 -0.928 -15.084 29.05 1 70.51 ? H71 OLA 1205 A 1 HETATM 21 H H72 OLA . . . F 4 0.684 -14.495 28.651 1 70.51 ? H72 OLA 1205 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #