data_5NM4 # _model_server_result.job_id aH6CepzfG8KW0vDwMNhJ_A _model_server_result.datetime_utc '2024-11-26 12:06:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nm4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5NM4 # _exptl.entry_id 5NM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.461 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OLEIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NM4 _cell.length_a 39.89 _cell.length_b 179.15 _cell.length_c 141.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 80 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? disulf ? disulf2 A SG CYS 83 A CYS 83 1_555 A SG CYS 155 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? disulf ? disulf3 A SG CYS 86 A CYS 86 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? disulf ? disulf4 A SG CYS 364 A CYS 364 1_555 A SG CYS 367 A CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A OD1 ASP 61 A ASP 61 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc2 A OG SER 100 A SER 100 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc3 G NA NA . A NA 506 1_555 L O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc4 G NA NA . A NA 506 1_555 L O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? # _chem_comp.formula 'C18 H34 O2' _chem_comp.formula_weight 282.461 _chem_comp.id OLA _chem_comp.mon_nstd_flag . _chem_comp.name 'OLEIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 OLA doub 314 n n C1 O2 OLA sing 315 n n C1 C2 OLA sing 316 n n O2 HO2 OLA sing 317 n n C2 C3 OLA sing 318 n n C2 H21 OLA sing 319 n n C2 H22 OLA sing 320 n n C3 C4 OLA sing 321 n n C3 H31 OLA sing 322 n n C3 H32 OLA sing 323 n n C4 C5 OLA sing 324 n n C4 H41 OLA sing 325 n n C4 H42 OLA sing 326 n n C5 C6 OLA sing 327 n n C5 H51 OLA sing 328 n n C5 H52 OLA sing 329 n n C6 C7 OLA sing 330 n n C6 H61 OLA sing 331 n n C6 H62 OLA sing 332 n n C7 C8 OLA sing 333 n n C7 H71 OLA sing 334 n n C7 H72 OLA sing 335 n n C8 C9 OLA sing 336 n n C8 H81 OLA sing 337 n n C8 H82 OLA sing 338 n n C9 C10 OLA doub 339 z n C9 H9 OLA sing 340 n n C10 C11 OLA sing 341 n n C10 H10 OLA sing 342 n n C11 C12 OLA sing 343 n n C11 H111 OLA sing 344 n n C11 H112 OLA sing 345 n n C12 C13 OLA sing 346 n n C12 H121 OLA sing 347 n n C12 H122 OLA sing 348 n n C13 C14 OLA sing 349 n n C13 H131 OLA sing 350 n n C13 H132 OLA sing 351 n n C14 C15 OLA sing 352 n n C14 H141 OLA sing 353 n n C14 H142 OLA sing 354 n n C15 C16 OLA sing 355 n n C15 H151 OLA sing 356 n n C15 H152 OLA sing 357 n n C16 C17 OLA sing 358 n n C16 H161 OLA sing 359 n n C16 H162 OLA sing 360 n n C17 C18 OLA sing 361 n n C17 H171 OLA sing 362 n n C17 H172 OLA sing 363 n n C18 H181 OLA sing 364 n n C18 H182 OLA sing 365 n n C18 H183 OLA sing 366 n n # _atom_sites.entry_id 5NM4 _atom_sites.fract_transf_matrix[1][1] 0.025069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007082 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLA A 1 501 1 OLA OLA . C 2 OLA A 1 502 2 OLA OLA . D 2 OLA A 1 503 3 OLA OLA . E 2 OLA A 1 504 4 OLA OLA . F 2 OLA A 1 505 5 OLA OLA . G 3 NA A 1 506 1 NA NA . H 4 ZMA A 1 507 1 ZMA ZMA . I 5 CLR A 1 508 1 CLR XXX . J 5 CLR A 1 509 2 CLR XXX . K 5 CLR A 1 510 3 CLR XXX . L 6 HOH A 1 601 50 HOH HOH . L 6 HOH A 2 602 37 HOH HOH . L 6 HOH A 3 603 47 HOH HOH . L 6 HOH A 4 604 57 HOH HOH . L 6 HOH A 5 605 16 HOH HOH . L 6 HOH A 6 606 20 HOH HOH . L 6 HOH A 7 607 52 HOH HOH . L 6 HOH A 8 608 53 HOH HOH . L 6 HOH A 9 609 21 HOH HOH . L 6 HOH A 10 610 15 HOH HOH . L 6 HOH A 11 611 26 HOH HOH . L 6 HOH A 12 612 43 HOH HOH . L 6 HOH A 13 613 9 HOH HOH . L 6 HOH A 14 614 2 HOH HOH . L 6 HOH A 15 615 3 HOH HOH . L 6 HOH A 16 616 34 HOH HOH . L 6 HOH A 17 617 32 HOH HOH . L 6 HOH A 18 618 4 HOH HOH . L 6 HOH A 19 619 41 HOH HOH . L 6 HOH A 20 620 18 HOH HOH . L 6 HOH A 21 621 23 HOH HOH . L 6 HOH A 22 622 39 HOH HOH . L 6 HOH A 23 623 8 HOH HOH . L 6 HOH A 24 624 19 HOH HOH . L 6 HOH A 25 625 17 HOH HOH . L 6 HOH A 26 626 38 HOH HOH . L 6 HOH A 27 627 12 HOH HOH . L 6 HOH A 28 628 51 HOH HOH . L 6 HOH A 29 629 14 HOH HOH . L 6 HOH A 30 630 22 HOH HOH . L 6 HOH A 31 631 6 HOH HOH . L 6 HOH A 32 632 35 HOH HOH . L 6 HOH A 33 633 5 HOH HOH . L 6 HOH A 34 634 7 HOH HOH . L 6 HOH A 35 635 36 HOH HOH . L 6 HOH A 36 636 13 HOH HOH . L 6 HOH A 37 637 59 HOH HOH . L 6 HOH A 38 638 33 HOH HOH . L 6 HOH A 39 639 1 HOH HOH . L 6 HOH A 40 640 46 HOH HOH . L 6 HOH A 41 641 24 HOH HOH . L 6 HOH A 42 642 54 HOH HOH . L 6 HOH A 43 643 29 HOH HOH . L 6 HOH A 44 644 31 HOH HOH . L 6 HOH A 45 645 28 HOH HOH . L 6 HOH A 46 646 11 HOH HOH . L 6 HOH A 47 647 10 HOH HOH . L 6 HOH A 48 648 42 HOH HOH . L 6 HOH A 49 649 44 HOH HOH . L 6 HOH A 50 650 30 HOH HOH . L 6 HOH A 51 651 45 HOH HOH . L 6 HOH A 52 652 25 HOH HOH . L 6 HOH A 53 653 48 HOH HOH . L 6 HOH A 54 654 40 HOH HOH . L 6 HOH A 55 655 55 HOH HOH . L 6 HOH A 56 656 58 HOH HOH . L 6 HOH A 57 657 27 HOH HOH . L 6 HOH A 58 658 56 HOH HOH . L 6 HOH A 59 659 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLA . . . C 2 22.049 105.027 56.405 1 160.25 ? C1 OLA 502 A 1 HETATM 2 O O1 OLA . . . C 2 21.293 105.654 55.612 1 163.03 ? O1 OLA 502 A 1 HETATM 3 O O2 OLA . . . C 2 23.194 105.477 56.678 1 161.09 ? O2 OLA 502 A 1 HETATM 4 C C2 OLA . . . C 2 21.576 103.711 57.041 1 156.35 ? C2 OLA 502 A 1 HETATM 5 C C3 OLA . . . C 2 22.191 102.533 56.284 1 155.68 ? C3 OLA 502 A 1 HETATM 6 C C4 OLA . . . C 2 22.238 101.29 57.199 1 160.64 ? C4 OLA 502 A 1 HETATM 7 C C5 OLA . . . C 2 20.942 100.484 57.079 1 170.34 ? C5 OLA 502 A 1 HETATM 8 C C6 OLA . . . C 2 21.228 99.111 56.433 1 181.86 ? C6 OLA 502 A 1 HETATM 9 C C7 OLA . . . C 2 21.459 98.06 57.527 1 192.12 ? C7 OLA 502 A 1 HETATM 10 C C8 OLA . . . C 2 21.711 96.693 56.85 1 199.43 ? C8 OLA 502 A 1 HETATM 11 C C9 OLA . . . C 2 21.394 95.569 57.856 1 203.66 ? C9 OLA 502 A 1 HETATM 12 C C10 OLA . . . C 2 21.952 94.361 57.776 1 204.94 ? C10 OLA 502 A 1 HETATM 13 C C11 OLA . . . C 2 22.961 93.985 56.674 1 202.9 ? C11 OLA 502 A 1 HETATM 14 C C12 OLA . . . C 2 23.882 92.87 57.204 1 197.57 ? C12 OLA 502 A 1 HETATM 15 C C13 OLA . . . C 2 24.255 91.911 56.071 1 190.49 ? C13 OLA 502 A 1 HETATM 16 C C14 OLA . . . C 2 23.594 90.54 56.274 1 184.56 ? C14 OLA 502 A 1 HETATM 17 C C15 OLA . . . C 2 24.633 89.483 56.657 1 181.96 ? C15 OLA 502 A 1 HETATM 18 C C16 OLA . . . C 2 24.624 88.351 55.612 1 182.5 ? C16 OLA 502 A 1 HETATM 19 C C17 OLA . . . C 2 23.592 87.288 55.983 1 184.14 ? C17 OLA 502 A 1 HETATM 20 C C18 OLA . . . C 2 22.204 87.681 55.459 1 185.18 ? C18 OLA 502 A 1 HETATM 21 H H21 OLA . . . C 2 20.608 103.657 56.993 1 187.62 ? H21 OLA 502 A 1 HETATM 22 H H22 OLA . . . C 2 21.856 103.682 57.97 1 187.62 ? H22 OLA 502 A 1 HETATM 23 H H31 OLA . . . C 2 21.652 102.336 55.502 1 186.81 ? H31 OLA 502 A 1 HETATM 24 H H32 OLA . . . C 2 23.091 102.763 56.007 1 186.81 ? H32 OLA 502 A 1 HETATM 25 H H41 OLA . . . C 2 22.987 100.731 56.941 1 192.77 ? H41 OLA 502 A 1 HETATM 26 H H42 OLA . . . C 2 22.353 101.575 58.119 1 192.77 ? H42 OLA 502 A 1 HETATM 27 H H51 OLA . . . C 2 20.309 100.972 56.529 1 204.41 ? H51 OLA 502 A 1 HETATM 28 H H52 OLA . . . C 2 20.563 100.35 57.962 1 204.41 ? H52 OLA 502 A 1 HETATM 29 H H61 OLA . . . C 2 22.02 99.176 55.876 1 218.23 ? H61 OLA 502 A 1 HETATM 30 H H62 OLA . . . C 2 20.471 98.847 55.888 1 218.23 ? H62 OLA 502 A 1 HETATM 31 H H71 OLA . . . C 2 22.232 98.307 58.06 1 230.54 ? H71 OLA 502 A 1 HETATM 32 H H72 OLA . . . C 2 20.676 98.003 58.096 1 230.54 ? H72 OLA 502 A 1 HETATM 33 H H81 OLA . . . C 2 21.137 96.604 56.073 1 239.31 ? H81 OLA 502 A 1 HETATM 34 H H82 OLA . . . C 2 22.639 96.631 56.576 1 239.31 ? H82 OLA 502 A 1 HETATM 35 H H9 OLA . . . C 2 20.791 95.74 58.543 1 244.4 ? H9 OLA 502 A 1 HETATM 36 H H10 OLA . . . C 2 21.724 93.721 58.411 1 245.93 ? H10 OLA 502 A 1 HETATM 37 H H111 OLA . . . C 2 22.485 93.669 55.891 1 243.48 ? H111 OLA 502 A 1 HETATM 38 H H112 OLA . . . C 2 23.493 94.762 56.441 1 243.48 ? H112 OLA 502 A 1 HETATM 39 H H121 OLA . . . C 2 23.422 92.378 57.903 1 237.09 ? H121 OLA 502 A 1 HETATM 40 H H122 OLA . . . C 2 24.689 93.266 57.569 1 237.09 ? H122 OLA 502 A 1 HETATM 41 H H131 OLA . . . C 2 23.959 92.285 55.226 1 228.59 ? H131 OLA 502 A 1 HETATM 42 H H132 OLA . . . C 2 25.218 91.8 56.051 1 228.59 ? H132 OLA 502 A 1 HETATM 43 H H141 OLA . . . C 2 22.932 90.606 56.98 1 221.47 ? H141 OLA 502 A 1 HETATM 44 H H142 OLA . . . C 2 23.156 90.272 55.45 1 221.47 ? H142 OLA 502 A 1 HETATM 45 H H151 OLA . . . C 2 25.513 89.89 56.685 1 218.36 ? H151 OLA 502 A 1 HETATM 46 H H152 OLA . . . C 2 24.417 89.119 57.529 1 218.36 ? H152 OLA 502 A 1 HETATM 47 H H161 OLA . . . C 2 25.504 87.944 55.574 1 219 ? H161 OLA 502 A 1 HETATM 48 H H162 OLA . . . C 2 24.405 88.721 54.742 1 219 ? H162 OLA 502 A 1 HETATM 49 H H171 OLA . . . C 2 23.557 87.199 56.948 1 220.97 ? H171 OLA 502 A 1 HETATM 50 H H172 OLA . . . C 2 23.853 86.44 55.592 1 220.97 ? H172 OLA 502 A 1 HETATM 51 H H181 OLA . . . C 2 21.912 88.496 55.897 1 222.22 ? H181 OLA 502 A 1 HETATM 52 H H182 OLA . . . C 2 21.573 86.969 55.649 1 222.22 ? H182 OLA 502 A 1 HETATM 53 H H183 OLA . . . C 2 22.248 87.827 54.501 1 222.22 ? H183 OLA 502 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #