data_5NM4 # _model_server_result.job_id NRPE5z_bo-XGNLvXhD3S0A _model_server_result.datetime_utc '2024-11-22 23:03:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nm4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 5NM4 # _exptl.entry_id 5NM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.461 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OLEIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NM4 _cell.length_a 39.89 _cell.length_b 179.15 _cell.length_c 141.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 80 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? disulf ? disulf2 A SG CYS 83 A CYS 83 1_555 A SG CYS 155 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? disulf ? disulf3 A SG CYS 86 A CYS 86 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? disulf ? disulf4 A SG CYS 364 A CYS 364 1_555 A SG CYS 367 A CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A OD1 ASP 61 A ASP 61 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc2 A OG SER 100 A SER 100 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc3 G NA NA . A NA 506 1_555 L O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc4 G NA NA . A NA 506 1_555 L O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? # _chem_comp.formula 'C18 H34 O2' _chem_comp.formula_weight 282.461 _chem_comp.id OLA _chem_comp.mon_nstd_flag . _chem_comp.name 'OLEIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 OLA doub 314 n n C1 O2 OLA sing 315 n n C1 C2 OLA sing 316 n n O2 HO2 OLA sing 317 n n C2 C3 OLA sing 318 n n C2 H21 OLA sing 319 n n C2 H22 OLA sing 320 n n C3 C4 OLA sing 321 n n C3 H31 OLA sing 322 n n C3 H32 OLA sing 323 n n C4 C5 OLA sing 324 n n C4 H41 OLA sing 325 n n C4 H42 OLA sing 326 n n C5 C6 OLA sing 327 n n C5 H51 OLA sing 328 n n C5 H52 OLA sing 329 n n C6 C7 OLA sing 330 n n C6 H61 OLA sing 331 n n C6 H62 OLA sing 332 n n C7 C8 OLA sing 333 n n C7 H71 OLA sing 334 n n C7 H72 OLA sing 335 n n C8 C9 OLA sing 336 n n C8 H81 OLA sing 337 n n C8 H82 OLA sing 338 n n C9 C10 OLA doub 339 z n C9 H9 OLA sing 340 n n C10 C11 OLA sing 341 n n C10 H10 OLA sing 342 n n C11 C12 OLA sing 343 n n C11 H111 OLA sing 344 n n C11 H112 OLA sing 345 n n C12 C13 OLA sing 346 n n C12 H121 OLA sing 347 n n C12 H122 OLA sing 348 n n C13 C14 OLA sing 349 n n C13 H131 OLA sing 350 n n C13 H132 OLA sing 351 n n C14 C15 OLA sing 352 n n C14 H141 OLA sing 353 n n C14 H142 OLA sing 354 n n C15 C16 OLA sing 355 n n C15 H151 OLA sing 356 n n C15 H152 OLA sing 357 n n C16 C17 OLA sing 358 n n C16 H161 OLA sing 359 n n C16 H162 OLA sing 360 n n C17 C18 OLA sing 361 n n C17 H171 OLA sing 362 n n C17 H172 OLA sing 363 n n C18 H181 OLA sing 364 n n C18 H182 OLA sing 365 n n C18 H183 OLA sing 366 n n # _atom_sites.entry_id 5NM4 _atom_sites.fract_transf_matrix[1][1] 0.025069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007082 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLA A 1 501 1 OLA OLA . C 2 OLA A 1 502 2 OLA OLA . D 2 OLA A 1 503 3 OLA OLA . E 2 OLA A 1 504 4 OLA OLA . F 2 OLA A 1 505 5 OLA OLA . G 3 NA A 1 506 1 NA NA . H 4 ZMA A 1 507 1 ZMA ZMA . I 5 CLR A 1 508 1 CLR XXX . J 5 CLR A 1 509 2 CLR XXX . K 5 CLR A 1 510 3 CLR XXX . L 6 HOH A 1 601 50 HOH HOH . L 6 HOH A 2 602 37 HOH HOH . L 6 HOH A 3 603 47 HOH HOH . L 6 HOH A 4 604 57 HOH HOH . L 6 HOH A 5 605 16 HOH HOH . L 6 HOH A 6 606 20 HOH HOH . L 6 HOH A 7 607 52 HOH HOH . L 6 HOH A 8 608 53 HOH HOH . L 6 HOH A 9 609 21 HOH HOH . L 6 HOH A 10 610 15 HOH HOH . L 6 HOH A 11 611 26 HOH HOH . L 6 HOH A 12 612 43 HOH HOH . L 6 HOH A 13 613 9 HOH HOH . L 6 HOH A 14 614 2 HOH HOH . L 6 HOH A 15 615 3 HOH HOH . L 6 HOH A 16 616 34 HOH HOH . L 6 HOH A 17 617 32 HOH HOH . L 6 HOH A 18 618 4 HOH HOH . L 6 HOH A 19 619 41 HOH HOH . L 6 HOH A 20 620 18 HOH HOH . L 6 HOH A 21 621 23 HOH HOH . L 6 HOH A 22 622 39 HOH HOH . L 6 HOH A 23 623 8 HOH HOH . L 6 HOH A 24 624 19 HOH HOH . L 6 HOH A 25 625 17 HOH HOH . L 6 HOH A 26 626 38 HOH HOH . L 6 HOH A 27 627 12 HOH HOH . L 6 HOH A 28 628 51 HOH HOH . L 6 HOH A 29 629 14 HOH HOH . L 6 HOH A 30 630 22 HOH HOH . L 6 HOH A 31 631 6 HOH HOH . L 6 HOH A 32 632 35 HOH HOH . L 6 HOH A 33 633 5 HOH HOH . L 6 HOH A 34 634 7 HOH HOH . L 6 HOH A 35 635 36 HOH HOH . L 6 HOH A 36 636 13 HOH HOH . L 6 HOH A 37 637 59 HOH HOH . L 6 HOH A 38 638 33 HOH HOH . L 6 HOH A 39 639 1 HOH HOH . L 6 HOH A 40 640 46 HOH HOH . L 6 HOH A 41 641 24 HOH HOH . L 6 HOH A 42 642 54 HOH HOH . L 6 HOH A 43 643 29 HOH HOH . L 6 HOH A 44 644 31 HOH HOH . L 6 HOH A 45 645 28 HOH HOH . L 6 HOH A 46 646 11 HOH HOH . L 6 HOH A 47 647 10 HOH HOH . L 6 HOH A 48 648 42 HOH HOH . L 6 HOH A 49 649 44 HOH HOH . L 6 HOH A 50 650 30 HOH HOH . L 6 HOH A 51 651 45 HOH HOH . L 6 HOH A 52 652 25 HOH HOH . L 6 HOH A 53 653 48 HOH HOH . L 6 HOH A 54 654 40 HOH HOH . L 6 HOH A 55 655 55 HOH HOH . L 6 HOH A 56 656 58 HOH HOH . L 6 HOH A 57 657 27 HOH HOH . L 6 HOH A 58 658 56 HOH HOH . L 6 HOH A 59 659 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLA . . . E 2 12.285 71.462 48.265 1 165.42 ? C1 OLA 504 A 1 HETATM 2 O O1 OLA . . . E 2 11.314 70.678 48.433 1 165.74 ? O1 OLA 504 A 1 HETATM 3 O O2 OLA . . . E 2 13.287 71.083 47.608 1 165.35 ? O2 OLA 504 A 1 HETATM 4 C C2 OLA . . . E 2 12.248 72.874 48.866 1 164.92 ? C2 OLA 504 A 1 HETATM 5 C C3 OLA . . . E 2 12.339 73.913 47.748 1 163.82 ? C3 OLA 504 A 1 HETATM 6 C C4 OLA . . . E 2 13.04 75.174 48.283 1 162.99 ? C4 OLA 504 A 1 HETATM 7 C C5 OLA . . . E 2 12.705 76.34 47.356 1 163.09 ? C5 OLA 504 A 1 HETATM 8 C C6 OLA . . . E 2 13.774 77.434 47.516 1 163.47 ? C6 OLA 504 A 1 HETATM 9 C C7 OLA . . . E 2 13.394 78.593 46.588 1 162.18 ? C7 OLA 504 A 1 HETATM 10 C C8 OLA . . . E 2 14.154 79.866 47.013 1 157.82 ? C8 OLA 504 A 1 HETATM 11 C C9 OLA . . . E 2 13.891 80.956 45.962 1 150.91 ? C9 OLA 504 A 1 HETATM 12 C C10 OLA . . . E 2 14.479 82.141 46.067 1 142.96 ? C10 OLA 504 A 1 HETATM 13 C C11 OLA . . . E 2 15.43 82.436 47.242 1 134.36 ? C11 OLA 504 A 1 HETATM 14 C C12 OLA . . . E 2 15.982 83.868 47.09 1 124.96 ? C12 OLA 504 A 1 HETATM 15 C C13 OLA . . . E 2 17.221 84.05 47.978 1 116.05 ? C13 OLA 504 A 1 HETATM 16 C C14 OLA . . . E 2 17.363 85.537 48.354 1 109.63 ? C14 OLA 504 A 1 HETATM 17 C C15 OLA . . . E 2 17.78 86.373 47.134 1 106.11 ? C15 OLA 504 A 1 HETATM 18 C C16 OLA . . . E 2 16.57 87.051 46.446 1 105 ? C16 OLA 504 A 1 HETATM 19 C C17 OLA . . . E 2 15.953 88.154 47.308 1 104.93 ? C17 OLA 504 A 1 HETATM 20 C C18 OLA . . . E 2 16.932 89.33 47.455 1 104.84 ? C18 OLA 504 A 1 HETATM 21 H H21 OLA . . . E 2 11.418 72.996 49.353 1 197.9 ? H21 OLA 504 A 1 HETATM 22 H H22 OLA . . . E 2 12.998 72.986 49.472 1 197.9 ? H22 OLA 504 A 1 HETATM 23 H H31 OLA . . . E 2 11.446 74.142 47.445 1 196.59 ? H31 OLA 504 A 1 HETATM 24 H H32 OLA . . . E 2 12.848 73.549 47.007 1 196.59 ? H32 OLA 504 A 1 HETATM 25 H H41 OLA . . . E 2 13.999 75.034 48.298 1 195.59 ? H41 OLA 504 A 1 HETATM 26 H H42 OLA . . . E 2 12.724 75.368 49.179 1 195.59 ? H42 OLA 504 A 1 HETATM 27 H H51 OLA . . . E 2 12.693 76.03 46.437 1 195.71 ? H51 OLA 504 A 1 HETATM 28 H H52 OLA . . . E 2 11.835 76.7 47.589 1 195.71 ? H52 OLA 504 A 1 HETATM 29 H H61 OLA . . . E 2 14.643 77.084 47.266 1 196.16 ? H61 OLA 504 A 1 HETATM 30 H H62 OLA . . . E 2 13.795 77.742 48.436 1 196.16 ? H62 OLA 504 A 1 HETATM 31 H H71 OLA . . . E 2 13.629 78.366 45.675 1 194.62 ? H71 OLA 504 A 1 HETATM 32 H H72 OLA . . . E 2 12.439 78.753 46.646 1 194.62 ? H72 OLA 504 A 1 HETATM 33 H H81 OLA . . . E 2 15.105 79.68 47.06 1 189.38 ? H81 OLA 504 A 1 HETATM 34 H H82 OLA . . . E 2 13.835 80.164 47.88 1 189.38 ? H82 OLA 504 A 1 HETATM 35 H H9 OLA . . . E 2 13.318 80.784 45.25 1 181.09 ? H9 OLA 504 A 1 HETATM 36 H H10 OLA . . . E 2 14.316 82.797 45.427 1 171.55 ? H10 OLA 504 A 1 HETATM 37 H H111 OLA . . . E 2 16.164 81.802 47.233 1 161.23 ? H111 OLA 504 A 1 HETATM 38 H H112 OLA . . . E 2 14.945 82.361 48.079 1 161.23 ? H112 OLA 504 A 1 HETATM 39 H H121 OLA . . . E 2 15.3 84.505 47.355 1 149.96 ? H121 OLA 504 A 1 HETATM 40 H H122 OLA . . . E 2 16.224 84.023 46.164 1 149.96 ? H122 OLA 504 A 1 HETATM 41 H H131 OLA . . . E 2 17.123 83.52 48.784 1 139.27 ? H131 OLA 504 A 1 HETATM 42 H H132 OLA . . . E 2 18.011 83.762 47.494 1 139.27 ? H132 OLA 504 A 1 HETATM 43 H H141 OLA . . . E 2 18.035 85.627 49.048 1 131.55 ? H141 OLA 504 A 1 HETATM 44 H H142 OLA . . . E 2 16.513 85.864 48.689 1 131.55 ? H142 OLA 504 A 1 HETATM 45 H H151 OLA . . . E 2 18.403 87.059 47.421 1 127.33 ? H151 OLA 504 A 1 HETATM 46 H H152 OLA . . . E 2 18.223 85.795 46.493 1 127.33 ? H152 OLA 504 A 1 HETATM 47 H H161 OLA . . . E 2 15.894 86.379 46.267 1 126 ? H161 OLA 504 A 1 HETATM 48 H H162 OLA . . . E 2 16.861 87.436 45.605 1 126 ? H162 OLA 504 A 1 HETATM 49 H H171 OLA . . . E 2 15.748 87.798 48.187 1 125.92 ? H171 OLA 504 A 1 HETATM 50 H H172 OLA . . . E 2 15.136 88.468 46.891 1 125.92 ? H172 OLA 504 A 1 HETATM 51 H H181 OLA . . . E 2 17.724 89.034 47.93 1 125.8 ? H181 OLA 504 A 1 HETATM 52 H H182 OLA . . . E 2 17.184 89.652 46.575 1 125.8 ? H182 OLA 504 A 1 HETATM 53 H H183 OLA . . . E 2 16.505 90.046 47.951 1 125.8 ? H183 OLA 504 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #