data_5NM4 # _model_server_result.job_id mUFpvPslIFA4lVXr-7328g _model_server_result.datetime_utc '2024-10-19 06:47:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nm4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 5NM4 # _exptl.entry_id 5NM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.461 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OLEIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NM4 _cell.length_a 39.89 _cell.length_b 179.15 _cell.length_c 141.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 80 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? disulf ? disulf2 A SG CYS 83 A CYS 83 1_555 A SG CYS 155 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? disulf ? disulf3 A SG CYS 86 A CYS 86 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? disulf ? disulf4 A SG CYS 364 A CYS 364 1_555 A SG CYS 367 A CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A OD1 ASP 61 A ASP 61 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc2 A OG SER 100 A SER 100 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc3 G NA NA . A NA 506 1_555 L O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc4 G NA NA . A NA 506 1_555 L O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? # _chem_comp.formula 'C18 H34 O2' _chem_comp.formula_weight 282.461 _chem_comp.id OLA _chem_comp.mon_nstd_flag . _chem_comp.name 'OLEIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NM4 _atom_sites.fract_transf_matrix[1][1] 0.025069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007082 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLA A 1 501 1 OLA OLA . C 2 OLA A 1 502 2 OLA OLA . D 2 OLA A 1 503 3 OLA OLA . E 2 OLA A 1 504 4 OLA OLA . F 2 OLA A 1 505 5 OLA OLA . G 3 NA A 1 506 1 NA NA . H 4 ZMA A 1 507 1 ZMA ZMA . I 5 CLR A 1 508 1 CLR XXX . J 5 CLR A 1 509 2 CLR XXX . K 5 CLR A 1 510 3 CLR XXX . L 6 HOH A 1 601 50 HOH HOH . L 6 HOH A 2 602 37 HOH HOH . L 6 HOH A 3 603 47 HOH HOH . L 6 HOH A 4 604 57 HOH HOH . L 6 HOH A 5 605 16 HOH HOH . L 6 HOH A 6 606 20 HOH HOH . L 6 HOH A 7 607 52 HOH HOH . L 6 HOH A 8 608 53 HOH HOH . L 6 HOH A 9 609 21 HOH HOH . L 6 HOH A 10 610 15 HOH HOH . L 6 HOH A 11 611 26 HOH HOH . L 6 HOH A 12 612 43 HOH HOH . L 6 HOH A 13 613 9 HOH HOH . L 6 HOH A 14 614 2 HOH HOH . L 6 HOH A 15 615 3 HOH HOH . L 6 HOH A 16 616 34 HOH HOH . L 6 HOH A 17 617 32 HOH HOH . L 6 HOH A 18 618 4 HOH HOH . L 6 HOH A 19 619 41 HOH HOH . L 6 HOH A 20 620 18 HOH HOH . L 6 HOH A 21 621 23 HOH HOH . L 6 HOH A 22 622 39 HOH HOH . L 6 HOH A 23 623 8 HOH HOH . L 6 HOH A 24 624 19 HOH HOH . L 6 HOH A 25 625 17 HOH HOH . L 6 HOH A 26 626 38 HOH HOH . L 6 HOH A 27 627 12 HOH HOH . L 6 HOH A 28 628 51 HOH HOH . L 6 HOH A 29 629 14 HOH HOH . L 6 HOH A 30 630 22 HOH HOH . L 6 HOH A 31 631 6 HOH HOH . L 6 HOH A 32 632 35 HOH HOH . L 6 HOH A 33 633 5 HOH HOH . L 6 HOH A 34 634 7 HOH HOH . L 6 HOH A 35 635 36 HOH HOH . L 6 HOH A 36 636 13 HOH HOH . L 6 HOH A 37 637 59 HOH HOH . L 6 HOH A 38 638 33 HOH HOH . L 6 HOH A 39 639 1 HOH HOH . L 6 HOH A 40 640 46 HOH HOH . L 6 HOH A 41 641 24 HOH HOH . L 6 HOH A 42 642 54 HOH HOH . L 6 HOH A 43 643 29 HOH HOH . L 6 HOH A 44 644 31 HOH HOH . L 6 HOH A 45 645 28 HOH HOH . L 6 HOH A 46 646 11 HOH HOH . L 6 HOH A 47 647 10 HOH HOH . L 6 HOH A 48 648 42 HOH HOH . L 6 HOH A 49 649 44 HOH HOH . L 6 HOH A 50 650 30 HOH HOH . L 6 HOH A 51 651 45 HOH HOH . L 6 HOH A 52 652 25 HOH HOH . L 6 HOH A 53 653 48 HOH HOH . L 6 HOH A 54 654 40 HOH HOH . L 6 HOH A 55 655 55 HOH HOH . L 6 HOH A 56 656 58 HOH HOH . L 6 HOH A 57 657 27 HOH HOH . L 6 HOH A 58 658 56 HOH HOH . L 6 HOH A 59 659 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLA . . . F 2 15.749 106.444 57.509 1 175.17 ? C1 OLA 505 A 1 HETATM 2 O O1 OLA . . . F 2 16.697 107.092 56.984 1 177.07 ? O1 OLA 505 A 1 HETATM 3 O O2 OLA . . . F 2 14.676 107.027 57.821 1 175.92 ? O2 OLA 505 A 1 HETATM 4 C C2 OLA . . . F 2 15.899 104.939 57.773 1 171.92 ? C2 OLA 505 A 1 HETATM 5 C C3 OLA . . . F 2 17.055 104.396 56.931 1 169.5 ? C3 OLA 505 A 1 HETATM 6 C C4 OLA . . . F 2 17.406 102.977 57.416 1 167.69 ? C4 OLA 505 A 1 HETATM 7 C C5 OLA . . . F 2 16.358 101.99 56.894 1 165.17 ? C5 OLA 505 A 1 HETATM 8 C C6 OLA . . . F 2 15.931 101.006 58.009 1 161.43 ? C6 OLA 505 A 1 HETATM 9 C C7 OLA . . . F 2 16.96 99.868 58.136 1 156.39 ? C7 OLA 505 A 1 HETATM 10 C C8 OLA . . . F 2 16.349 98.653 58.882 1 150.39 ? C8 OLA 505 A 1 HETATM 11 C C9 OLA . . . F 2 16.919 97.367 58.258 1 143.89 ? C9 OLA 505 A 1 HETATM 12 C C10 OLA . . . F 2 16.715 96.173 58.807 1 137.24 ? C10 OLA 505 A 1 HETATM 13 C C11 OLA . . . F 2 15.891 96.023 60.1 1 130.21 ? C11 OLA 505 A 1 HETATM 14 C C12 OLA . . . F 2 15.992 94.602 60.706 1 122.52 ? C12 OLA 505 A 1 HETATM 15 C C13 OLA . . . F 2 17.324 93.907 60.396 1 115.12 ? C13 OLA 505 A 1 HETATM 16 C C14 OLA . . . F 2 17.481 92.682 61.313 1 110.43 ? C14 OLA 505 A 1 HETATM 17 H H21 OLA . . . F 2 16.085 104.791 58.713 1 206.3 ? H21 OLA 505 A 1 HETATM 18 H H22 OLA . . . F 2 15.078 104.483 57.529 1 206.3 ? H22 OLA 505 A 1 HETATM 19 H H31 OLA . . . F 2 16.791 104.365 55.998 1 203.4 ? H31 OLA 505 A 1 HETATM 20 H H32 OLA . . . F 2 17.828 104.974 57.03 1 203.4 ? H32 OLA 505 A 1 HETATM 21 H H41 OLA . . . F 2 17.413 102.958 58.386 1 201.23 ? H41 OLA 505 A 1 HETATM 22 H H42 OLA . . . F 2 18.282 102.727 57.081 1 201.23 ? H42 OLA 505 A 1 HETATM 23 H H51 OLA . . . F 2 16.733 101.49 56.152 1 198.21 ? H51 OLA 505 A 1 HETATM 24 H H52 OLA . . . F 2 15.581 102.483 56.587 1 198.21 ? H52 OLA 505 A 1 HETATM 25 H H61 OLA . . . F 2 15.873 101.482 58.852 1 193.72 ? H61 OLA 505 A 1 HETATM 26 H H62 OLA . . . F 2 15.063 100.632 57.791 1 193.72 ? H62 OLA 505 A 1 HETATM 27 H H71 OLA . . . F 2 17.239 99.59 57.249 1 187.67 ? H71 OLA 505 A 1 HETATM 28 H H72 OLA . . . F 2 17.732 100.189 58.628 1 187.67 ? H72 OLA 505 A 1 HETATM 29 H H81 OLA . . . F 2 16.586 98.693 59.822 1 180.47 ? H81 OLA 505 A 1 HETATM 30 H H82 OLA . . . F 2 15.384 98.662 58.787 1 180.47 ? H82 OLA 505 A 1 HETATM 31 H H9 OLA . . . F 2 17.421 97.427 57.477 1 172.67 ? H9 OLA 505 A 1 HETATM 32 H H10 OLA . . . F 2 17.074 95.417 58.403 1 164.69 ? H10 OLA 505 A 1 HETATM 33 H H111 OLA . . . F 2 14.961 96.214 59.903 1 156.25 ? H111 OLA 505 A 1 HETATM 34 H H112 OLA . . . F 2 16.212 96.665 60.752 1 156.25 ? H112 OLA 505 A 1 HETATM 35 H H121 OLA . . . F 2 15.269 94.061 60.353 1 147.03 ? H121 OLA 505 A 1 HETATM 36 H H122 OLA . . . F 2 15.891 94.667 61.669 1 147.03 ? H122 OLA 505 A 1 HETATM 37 H H131 OLA . . . F 2 18.056 94.524 60.552 1 138.15 ? H131 OLA 505 A 1 HETATM 38 H H132 OLA . . . F 2 17.333 93.621 59.469 1 138.15 ? H132 OLA 505 A 1 HETATM 39 H H141 OLA . . . F 2 16.882 91.979 61.018 1 132.52 ? H141 OLA 505 A 1 HETATM 40 H H142 OLA . . . F 2 17.264 92.931 62.225 1 132.52 ? H142 OLA 505 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 40 #