data_5NM4
#
_model_server_result.job_id            qVXtpIDageFoQyNN9oZVZA 
_model_server_result.datetime_utc      '2024-10-19 06:37:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nm4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":506}' 
#
_entry.id    5NM4 
#
_exptl.entry_id    5NM4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NM4 
_cell.length_a            39.89 
_cell.length_b            179.15 
_cell.length_c            141.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NM4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 80 A CYS 80 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
disulf ? disulf2 A SG CYS 83 A CYS 83 1_555 A SG CYS 155 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? 
disulf ? disulf3 A SG CYS 86 A CYS 86 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? 
disulf ? disulf4 A SG CYS 364 A CYS 364 1_555 A SG CYS 367 A CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc1 A OD1 ASP 61 A ASP 61 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc2 A OG SER 100 A SER 100 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
metalc ? metalc3 G NA NA . A NA 506 1_555 L O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc4 G NA NA . A NA 506 1_555 L O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5NM4 
_atom_sites.fract_transf_matrix[1][1]    0.025069 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005582 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007082 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 OLA A 1 501 1 OLA OLA . 
C 2 OLA A 1 502 2 OLA OLA . 
D 2 OLA A 1 503 3 OLA OLA . 
E 2 OLA A 1 504 4 OLA OLA . 
F 2 OLA A 1 505 5 OLA OLA . 
G 3 NA A 1 506 1 NA NA . 
H 4 ZMA A 1 507 1 ZMA ZMA . 
I 5 CLR A 1 508 1 CLR XXX . 
J 5 CLR A 1 509 2 CLR XXX . 
K 5 CLR A 1 510 3 CLR XXX . 
L 6 HOH A 1 601 50 HOH HOH . 
L 6 HOH A 2 602 37 HOH HOH . 
L 6 HOH A 3 603 47 HOH HOH . 
L 6 HOH A 4 604 57 HOH HOH . 
L 6 HOH A 5 605 16 HOH HOH . 
L 6 HOH A 6 606 20 HOH HOH . 
L 6 HOH A 7 607 52 HOH HOH . 
L 6 HOH A 8 608 53 HOH HOH . 
L 6 HOH A 9 609 21 HOH HOH . 
L 6 HOH A 10 610 15 HOH HOH . 
L 6 HOH A 11 611 26 HOH HOH . 
L 6 HOH A 12 612 43 HOH HOH . 
L 6 HOH A 13 613 9 HOH HOH . 
L 6 HOH A 14 614 2 HOH HOH . 
L 6 HOH A 15 615 3 HOH HOH . 
L 6 HOH A 16 616 34 HOH HOH . 
L 6 HOH A 17 617 32 HOH HOH . 
L 6 HOH A 18 618 4 HOH HOH . 
L 6 HOH A 19 619 41 HOH HOH . 
L 6 HOH A 20 620 18 HOH HOH . 
L 6 HOH A 21 621 23 HOH HOH . 
L 6 HOH A 22 622 39 HOH HOH . 
L 6 HOH A 23 623 8 HOH HOH . 
L 6 HOH A 24 624 19 HOH HOH . 
L 6 HOH A 25 625 17 HOH HOH . 
L 6 HOH A 26 626 38 HOH HOH . 
L 6 HOH A 27 627 12 HOH HOH . 
L 6 HOH A 28 628 51 HOH HOH . 
L 6 HOH A 29 629 14 HOH HOH . 
L 6 HOH A 30 630 22 HOH HOH . 
L 6 HOH A 31 631 6 HOH HOH . 
L 6 HOH A 32 632 35 HOH HOH . 
L 6 HOH A 33 633 5 HOH HOH . 
L 6 HOH A 34 634 7 HOH HOH . 
L 6 HOH A 35 635 36 HOH HOH . 
L 6 HOH A 36 636 13 HOH HOH . 
L 6 HOH A 37 637 59 HOH HOH . 
L 6 HOH A 38 638 33 HOH HOH . 
L 6 HOH A 39 639 1 HOH HOH . 
L 6 HOH A 40 640 46 HOH HOH . 
L 6 HOH A 41 641 24 HOH HOH . 
L 6 HOH A 42 642 54 HOH HOH . 
L 6 HOH A 43 643 29 HOH HOH . 
L 6 HOH A 44 644 31 HOH HOH . 
L 6 HOH A 45 645 28 HOH HOH . 
L 6 HOH A 46 646 11 HOH HOH . 
L 6 HOH A 47 647 10 HOH HOH . 
L 6 HOH A 48 648 42 HOH HOH . 
L 6 HOH A 49 649 44 HOH HOH . 
L 6 HOH A 50 650 30 HOH HOH . 
L 6 HOH A 51 651 45 HOH HOH . 
L 6 HOH A 52 652 25 HOH HOH . 
L 6 HOH A 53 653 48 HOH HOH . 
L 6 HOH A 54 654 40 HOH HOH . 
L 6 HOH A 55 655 55 HOH HOH . 
L 6 HOH A 56 656 58 HOH HOH . 
L 6 HOH A 57 657 27 HOH HOH . 
L 6 HOH A 58 658 56 HOH HOH . 
L 6 HOH A 59 659 49 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               3.68 
_atom_site.Cartn_y               80.898 
_atom_site.Cartn_z               54.044 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        48.59 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           506 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#