data_5NM4 # _model_server_result.job_id l9TQXsz8x7T5rLE9LHjfhg _model_server_result.datetime_utc '2024-11-26 12:02:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nm4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 5NM4 # _exptl.entry_id 5NM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 337.336 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NM4 _cell.length_a 39.89 _cell.length_b 179.15 _cell.length_c 141.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 80 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? disulf ? disulf2 A SG CYS 83 A CYS 83 1_555 A SG CYS 155 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? disulf ? disulf3 A SG CYS 86 A CYS 86 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? disulf ? disulf4 A SG CYS 364 A CYS 364 1_555 A SG CYS 367 A CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A OD1 ASP 61 A ASP 61 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc2 A OG SER 100 A SER 100 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc3 G NA NA . A NA 506 1_555 L O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc4 G NA NA . A NA 506 1_555 L O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? # _chem_comp.formula 'C16 H15 N7 O2' _chem_comp.formula_weight 337.336 _chem_comp.id ZMA _chem_comp.mon_nstd_flag . _chem_comp.name 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C1 ZMA doub 506 n y C1 C2 ZMA sing 507 n y C1 H1 ZMA sing 508 n n C2 C3 ZMA doub 509 n y C2 H2 ZMA sing 510 n n C5 C3 ZMA sing 511 n y C3 O4 ZMA sing 512 n n O4 HO4 ZMA sing 513 n n C6 C5 ZMA doub 514 n y C5 H5 ZMA sing 515 n n C7 C6 ZMA sing 516 n y C6 H6 ZMA sing 517 n n C8 C7 ZMA sing 518 n n C9 C8 ZMA sing 519 n n C8 H8 ZMA sing 520 n n C8 H8A ZMA sing 521 n n N10 C9 ZMA sing 522 n n C9 H9 ZMA sing 523 n n C9 H9A ZMA sing 524 n n C11 N10 ZMA sing 525 n n N10 HN10 ZMA sing 526 n n N12 C11 ZMA doub 527 n y C11 N13 ZMA sing 528 n y C18 N12 ZMA sing 529 n y C14 N13 ZMA doub 530 n y N16 C14 ZMA sing 531 n y C14 N15 ZMA sing 532 n n N15 HN15 ZMA sing 533 n n N15 HN1A ZMA sing 534 n n N17 N16 ZMA sing 535 n y C18 N16 ZMA sing 536 n y C20 N17 ZMA doub 537 n y N19 C18 ZMA doub 538 n y C20 N19 ZMA sing 539 n y C21 C20 ZMA sing 540 n y C22 C21 ZMA doub 541 n y O25 C21 ZMA sing 542 n y C23 C22 ZMA sing 543 n y C22 H22 ZMA sing 544 n n C23 C24 ZMA doub 545 n y C23 H23 ZMA sing 546 n n C24 O25 ZMA sing 547 n y C24 H24 ZMA sing 548 n n # _atom_sites.entry_id 5NM4 _atom_sites.fract_transf_matrix[1][1] 0.025069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007082 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLA A 1 501 1 OLA OLA . C 2 OLA A 1 502 2 OLA OLA . D 2 OLA A 1 503 3 OLA OLA . E 2 OLA A 1 504 4 OLA OLA . F 2 OLA A 1 505 5 OLA OLA . G 3 NA A 1 506 1 NA NA . H 4 ZMA A 1 507 1 ZMA ZMA . I 5 CLR A 1 508 1 CLR XXX . J 5 CLR A 1 509 2 CLR XXX . K 5 CLR A 1 510 3 CLR XXX . L 6 HOH A 1 601 50 HOH HOH . L 6 HOH A 2 602 37 HOH HOH . L 6 HOH A 3 603 47 HOH HOH . L 6 HOH A 4 604 57 HOH HOH . L 6 HOH A 5 605 16 HOH HOH . L 6 HOH A 6 606 20 HOH HOH . L 6 HOH A 7 607 52 HOH HOH . L 6 HOH A 8 608 53 HOH HOH . L 6 HOH A 9 609 21 HOH HOH . L 6 HOH A 10 610 15 HOH HOH . L 6 HOH A 11 611 26 HOH HOH . L 6 HOH A 12 612 43 HOH HOH . L 6 HOH A 13 613 9 HOH HOH . L 6 HOH A 14 614 2 HOH HOH . L 6 HOH A 15 615 3 HOH HOH . L 6 HOH A 16 616 34 HOH HOH . L 6 HOH A 17 617 32 HOH HOH . L 6 HOH A 18 618 4 HOH HOH . L 6 HOH A 19 619 41 HOH HOH . L 6 HOH A 20 620 18 HOH HOH . L 6 HOH A 21 621 23 HOH HOH . L 6 HOH A 22 622 39 HOH HOH . L 6 HOH A 23 623 8 HOH HOH . L 6 HOH A 24 624 19 HOH HOH . L 6 HOH A 25 625 17 HOH HOH . L 6 HOH A 26 626 38 HOH HOH . L 6 HOH A 27 627 12 HOH HOH . L 6 HOH A 28 628 51 HOH HOH . L 6 HOH A 29 629 14 HOH HOH . L 6 HOH A 30 630 22 HOH HOH . L 6 HOH A 31 631 6 HOH HOH . L 6 HOH A 32 632 35 HOH HOH . L 6 HOH A 33 633 5 HOH HOH . L 6 HOH A 34 634 7 HOH HOH . L 6 HOH A 35 635 36 HOH HOH . L 6 HOH A 36 636 13 HOH HOH . L 6 HOH A 37 637 59 HOH HOH . L 6 HOH A 38 638 33 HOH HOH . L 6 HOH A 39 639 1 HOH HOH . L 6 HOH A 40 640 46 HOH HOH . L 6 HOH A 41 641 24 HOH HOH . L 6 HOH A 42 642 54 HOH HOH . L 6 HOH A 43 643 29 HOH HOH . L 6 HOH A 44 644 31 HOH HOH . L 6 HOH A 45 645 28 HOH HOH . L 6 HOH A 46 646 11 HOH HOH . L 6 HOH A 47 647 10 HOH HOH . L 6 HOH A 48 648 42 HOH HOH . L 6 HOH A 49 649 44 HOH HOH . L 6 HOH A 50 650 30 HOH HOH . L 6 HOH A 51 651 45 HOH HOH . L 6 HOH A 52 652 25 HOH HOH . L 6 HOH A 53 653 48 HOH HOH . L 6 HOH A 54 654 40 HOH HOH . L 6 HOH A 55 655 55 HOH HOH . L 6 HOH A 56 656 58 HOH HOH . L 6 HOH A 57 657 27 HOH HOH . L 6 HOH A 58 658 56 HOH HOH . L 6 HOH A 59 659 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ZMA . . . H 4 1.642 103.01 55.799 1 48.28 ? C1 ZMA 507 A 1 HETATM 2 C C2 ZMA . . . H 4 1.365 104.364 55.672 1 49.65 ? C2 ZMA 507 A 1 HETATM 3 C C3 ZMA . . . H 4 0.143 104.747 55.148 1 51.14 ? C3 ZMA 507 A 1 HETATM 4 O O4 ZMA . . . H 4 -0.174 106.129 54.998 1 53.99 ? O4 ZMA 507 A 1 HETATM 5 C C5 ZMA . . . H 4 -0.791 103.777 54.764 1 47.69 ? C5 ZMA 507 A 1 HETATM 6 C C6 ZMA . . . H 4 -0.515 102.424 54.858 1 45.41 ? C6 ZMA 507 A 1 HETATM 7 C C7 ZMA . . . H 4 0.682 102.042 55.411 1 43.3 ? C7 ZMA 507 A 1 HETATM 8 C C8 ZMA . . . H 4 0.99 100.58 55.51 1 38.16 ? C8 ZMA 507 A 1 HETATM 9 C C9 ZMA . . . H 4 1.91 100.38 54.316 1 34.82 ? C9 ZMA 507 A 1 HETATM 10 N N10 ZMA . . . H 4 2.313 99.016 54.202 1 34.77 ? N10 ZMA 507 A 1 HETATM 11 C C11 ZMA . . . H 4 1.457 98.116 53.518 1 32.73 ? C11 ZMA 507 A 1 HETATM 12 N N12 ZMA . . . H 4 1.868 96.886 53.35 1 33.44 ? N12 ZMA 507 A 1 HETATM 13 N N13 ZMA . . . H 4 0.283 98.617 53.117 1 34.59 ? N13 ZMA 507 A 1 HETATM 14 C C14 ZMA . . . H 4 -0.52 97.759 52.498 1 30.13 ? C14 ZMA 507 A 1 HETATM 15 N N15 ZMA . . . H 4 -1.731 98.289 52.064 1 29.97 ? N15 ZMA 507 A 1 HETATM 16 N N16 ZMA . . . H 4 -0.118 96.501 52.298 1 31.94 ? N16 ZMA 507 A 1 HETATM 17 N N17 ZMA . . . H 4 -0.781 95.471 51.741 1 31.79 ? N17 ZMA 507 A 1 HETATM 18 C C18 ZMA . . . H 4 1.048 96.069 52.72 1 30.92 ? C18 ZMA 507 A 1 HETATM 19 N N19 ZMA . . . H 4 1.205 94.812 52.413 1 32.09 ? N19 ZMA 507 A 1 HETATM 20 C C20 ZMA . . . H 4 0.048 94.473 51.809 1 31.96 ? C20 ZMA 507 A 1 HETATM 21 C C21 ZMA . . . H 4 -0.269 93.232 51.325 1 31.87 ? C21 ZMA 507 A 1 HETATM 22 C C22 ZMA . . . H 4 0.458 92.096 51.145 1 36.03 ? C22 ZMA 507 A 1 HETATM 23 C C23 ZMA . . . H 4 -0.462 91.182 50.677 1 36.86 ? C23 ZMA 507 A 1 HETATM 24 C C24 ZMA . . . H 4 -1.69 91.776 50.602 1 34.41 ? C24 ZMA 507 A 1 HETATM 25 O O25 ZMA . . . H 4 -1.573 93.024 51.024 1 34.19 ? O25 ZMA 507 A 1 HETATM 26 H H1 ZMA . . . H 4 2.459 102.736 56.149 1 57.94 ? H1 ZMA 507 A 1 HETATM 27 H H2 ZMA . . . H 4 1.987 105.002 55.939 1 59.58 ? H2 ZMA 507 A 1 HETATM 28 H HO4 ZMA . . . H 4 -0.295 106.304 54.175 1 64.79 ? HO4 ZMA 507 A 1 HETATM 29 H H5 ZMA . . . H 4 -1.602 104.049 54.4 1 57.23 ? H5 ZMA 507 A 1 HETATM 30 H H6 ZMA . . . H 4 -1.146 101.79 54.603 1 54.49 ? H6 ZMA 507 A 1 HETATM 31 H H8 ZMA . . . H 4 0.184 100.049 55.419 1 45.8 ? H8 ZMA 507 A 1 HETATM 32 H H8A ZMA . . . H 4 1.45 100.378 56.339 1 45.8 ? H8A ZMA 507 A 1 HETATM 33 H H9 ZMA . . . H 4 2.697 100.936 54.423 1 41.78 ? H9 ZMA 507 A 1 HETATM 34 H H9A ZMA . . . H 4 1.443 100.642 53.507 1 41.78 ? H9A ZMA 507 A 1 HETATM 35 H HN10 ZMA . . . H 4 3.056 98.747 54.539 1 41.72 ? HN10 ZMA 507 A 1 HETATM 36 H HN15 ZMA . . . H 4 -1.802 99.133 51.915 1 35.97 ? HN15 ZMA 507 A 1 HETATM 37 H HN1A ZMA . . . H 4 -2.408 97.772 51.944 1 35.97 ? HN1A ZMA 507 A 1 HETATM 38 H H22 ZMA . . . H 4 1.368 91.97 51.289 1 43.23 ? H22 ZMA 507 A 1 HETATM 39 H H23 ZMA . . . H 4 -0.274 90.304 50.436 1 44.23 ? H23 ZMA 507 A 1 HETATM 40 H H24 ZMA . . . H 4 -2.477 91.368 50.318 1 41.3 ? H24 ZMA 507 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 40 #