data_5NM4 # _model_server_result.job_id UBHw-TAvNj2Na1SVSTGdxw _model_server_result.datetime_utc '2024-10-19 06:36:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nm4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":508}' # _entry.id 5NM4 # _exptl.entry_id 5NM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NM4 _cell.length_a 39.89 _cell.length_b 179.15 _cell.length_c 141.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 80 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? disulf ? disulf2 A SG CYS 83 A CYS 83 1_555 A SG CYS 155 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? disulf ? disulf3 A SG CYS 86 A CYS 86 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? disulf ? disulf4 A SG CYS 364 A CYS 364 1_555 A SG CYS 367 A CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A OD1 ASP 61 A ASP 61 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc2 A OG SER 100 A SER 100 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc3 G NA NA . A NA 506 1_555 L O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc4 G NA NA . A NA 506 1_555 L O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NM4 _atom_sites.fract_transf_matrix[1][1] 0.025069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007082 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLA A 1 501 1 OLA OLA . C 2 OLA A 1 502 2 OLA OLA . D 2 OLA A 1 503 3 OLA OLA . E 2 OLA A 1 504 4 OLA OLA . F 2 OLA A 1 505 5 OLA OLA . G 3 NA A 1 506 1 NA NA . H 4 ZMA A 1 507 1 ZMA ZMA . I 5 CLR A 1 508 1 CLR XXX . J 5 CLR A 1 509 2 CLR XXX . K 5 CLR A 1 510 3 CLR XXX . L 6 HOH A 1 601 50 HOH HOH . L 6 HOH A 2 602 37 HOH HOH . L 6 HOH A 3 603 47 HOH HOH . L 6 HOH A 4 604 57 HOH HOH . L 6 HOH A 5 605 16 HOH HOH . L 6 HOH A 6 606 20 HOH HOH . L 6 HOH A 7 607 52 HOH HOH . L 6 HOH A 8 608 53 HOH HOH . L 6 HOH A 9 609 21 HOH HOH . L 6 HOH A 10 610 15 HOH HOH . L 6 HOH A 11 611 26 HOH HOH . L 6 HOH A 12 612 43 HOH HOH . L 6 HOH A 13 613 9 HOH HOH . L 6 HOH A 14 614 2 HOH HOH . L 6 HOH A 15 615 3 HOH HOH . L 6 HOH A 16 616 34 HOH HOH . L 6 HOH A 17 617 32 HOH HOH . L 6 HOH A 18 618 4 HOH HOH . L 6 HOH A 19 619 41 HOH HOH . L 6 HOH A 20 620 18 HOH HOH . L 6 HOH A 21 621 23 HOH HOH . L 6 HOH A 22 622 39 HOH HOH . L 6 HOH A 23 623 8 HOH HOH . L 6 HOH A 24 624 19 HOH HOH . L 6 HOH A 25 625 17 HOH HOH . L 6 HOH A 26 626 38 HOH HOH . L 6 HOH A 27 627 12 HOH HOH . L 6 HOH A 28 628 51 HOH HOH . L 6 HOH A 29 629 14 HOH HOH . L 6 HOH A 30 630 22 HOH HOH . L 6 HOH A 31 631 6 HOH HOH . L 6 HOH A 32 632 35 HOH HOH . L 6 HOH A 33 633 5 HOH HOH . L 6 HOH A 34 634 7 HOH HOH . L 6 HOH A 35 635 36 HOH HOH . L 6 HOH A 36 636 13 HOH HOH . L 6 HOH A 37 637 59 HOH HOH . L 6 HOH A 38 638 33 HOH HOH . L 6 HOH A 39 639 1 HOH HOH . L 6 HOH A 40 640 46 HOH HOH . L 6 HOH A 41 641 24 HOH HOH . L 6 HOH A 42 642 54 HOH HOH . L 6 HOH A 43 643 29 HOH HOH . L 6 HOH A 44 644 31 HOH HOH . L 6 HOH A 45 645 28 HOH HOH . L 6 HOH A 46 646 11 HOH HOH . L 6 HOH A 47 647 10 HOH HOH . L 6 HOH A 48 648 42 HOH HOH . L 6 HOH A 49 649 44 HOH HOH . L 6 HOH A 50 650 30 HOH HOH . L 6 HOH A 51 651 45 HOH HOH . L 6 HOH A 52 652 25 HOH HOH . L 6 HOH A 53 653 48 HOH HOH . L 6 HOH A 54 654 40 HOH HOH . L 6 HOH A 55 655 55 HOH HOH . L 6 HOH A 56 656 58 HOH HOH . L 6 HOH A 57 657 27 HOH HOH . L 6 HOH A 58 658 56 HOH HOH . L 6 HOH A 59 659 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . I 5 18.52 100.568 48.265 1 111.2 ? C1 CLR 508 A 1 HETATM 2 C C2 CLR . . . I 5 18.127 102.012 47.959 1 109.84 ? C2 CLR 508 A 1 HETATM 3 C C3 CLR . . . I 5 18.386 102.332 46.506 1 108.77 ? C3 CLR 508 A 1 HETATM 4 C C4 CLR . . . I 5 17.598 101.391 45.616 1 110.37 ? C4 CLR 508 A 1 HETATM 5 C C5 CLR . . . I 5 17.868 99.939 45.935 1 111.4 ? C5 CLR 508 A 1 HETATM 6 C C6 CLR . . . I 5 18.146 99.083 44.968 1 111.17 ? C6 CLR 508 A 1 HETATM 7 C C7 CLR . . . I 5 18.422 97.627 45.157 1 110.91 ? C7 CLR 508 A 1 HETATM 8 C C8 CLR . . . I 5 18.016 97.12 46.537 1 111.1 ? C8 CLR 508 A 1 HETATM 9 C C9 CLR . . . I 5 18.43 98.137 47.606 1 111.64 ? C9 CLR 508 A 1 HETATM 10 C C10 CLR . . . I 5 17.771 99.533 47.403 1 112.26 ? C10 CLR 508 A 1 HETATM 11 C C11 CLR . . . I 5 18.256 97.586 49.029 1 111.31 ? C11 CLR 508 A 1 HETATM 12 C C12 CLR . . . I 5 18.883 96.21 49.242 1 111.35 ? C12 CLR 508 A 1 HETATM 13 C C13 CLR . . . I 5 18.397 95.184 48.212 1 111.96 ? C13 CLR 508 A 1 HETATM 14 C C14 CLR . . . I 5 18.705 95.786 46.826 1 111.13 ? C14 CLR 508 A 1 HETATM 15 C C15 CLR . . . I 5 18.501 94.615 45.867 1 110.81 ? C15 CLR 508 A 1 HETATM 16 C C16 CLR . . . I 5 19.012 93.405 46.653 1 111.74 ? C16 CLR 508 A 1 HETATM 17 C C17 CLR . . . I 5 19.206 93.867 48.113 1 113.72 ? C17 CLR 508 A 1 HETATM 18 C C18 CLR . . . I 5 16.895 94.91 48.398 1 112.04 ? C18 CLR 508 A 1 HETATM 19 C C19 CLR . . . I 5 16.284 99.528 47.805 1 113.78 ? C19 CLR 508 A 1 HETATM 20 C C20 CLR . . . I 5 18.945 92.722 49.109 1 117.93 ? C20 CLR 508 A 1 HETATM 21 C C21 CLR . . . I 5 19.139 93.129 50.566 1 117.41 ? C21 CLR 508 A 1 HETATM 22 C C22 CLR . . . I 5 19.856 91.536 48.756 1 123.44 ? C22 CLR 508 A 1 HETATM 23 C C23 CLR . . . I 5 19.673 90.287 49.594 1 129.13 ? C23 CLR 508 A 1 HETATM 24 C C24 CLR . . . I 5 20.442 89.108 49.024 1 134.41 ? C24 CLR 508 A 1 HETATM 25 C C25 CLR . . . I 5 20.357 87.808 49.783 1 139.19 ? C25 CLR 508 A 1 HETATM 26 C C26 CLR . . . I 5 20.859 87.932 51.208 1 141.2 ? C26 CLR 508 A 1 HETATM 27 C C27 CLR . . . I 5 21.131 86.739 49.045 1 140.72 ? C27 CLR 508 A 1 HETATM 28 O O1 CLR . . . I 5 18.014 103.679 46.219 1 106.65 ? O1 CLR 508 A 1 HETATM 29 H H11 CLR . . . I 5 18.363 100.372 49.325 1 133.44 ? H11 CLR 508 A 1 HETATM 30 H H12 CLR . . . I 5 19.593 100.459 48.12 1 133.44 ? H12 CLR 508 A 1 HETATM 31 H H21 CLR . . . I 5 18.688 102.679 48.612 1 131.81 ? H21 CLR 508 A 1 HETATM 32 H H22 CLR . . . I 5 17.084 102.195 48.215 1 131.81 ? H22 CLR 508 A 1 HETATM 33 H H3 CLR . . . I 5 19.444 102.201 46.284 1 130.52 ? H3 CLR 508 A 1 HETATM 34 H H41 CLR . . . I 5 16.53 101.592 45.689 1 132.45 ? H41 CLR 508 A 1 HETATM 35 H H42 CLR . . . I 5 17.835 101.608 44.576 1 132.45 ? H42 CLR 508 A 1 HETATM 36 H H6 CLR . . . I 5 18.192 99.404 43.928 1 133.4 ? H6 CLR 508 A 1 HETATM 37 H H71 CLR . . . I 5 19.482 97.438 44.994 1 133.09 ? H71 CLR 508 A 1 HETATM 38 H H72 CLR . . . I 5 17.913 97.081 44.364 1 133.09 ? H72 CLR 508 A 1 HETATM 39 H H8 CLR . . . I 5 16.937 96.979 46.56 1 133.32 ? H8 CLR 508 A 1 HETATM 40 H H9 CLR . . . I 5 19.5 98.291 47.469 1 133.97 ? H9 CLR 508 A 1 HETATM 41 H H111 CLR . . . I 5 17.196 97.526 49.272 1 133.57 ? H111 CLR 508 A 1 HETATM 42 H H112 CLR . . . I 5 18.666 98.279 49.763 1 133.57 ? H112 CLR 508 A 1 HETATM 43 H H121 CLR . . . I 5 18.672 95.858 50.251 1 133.62 ? H121 CLR 508 A 1 HETATM 44 H H122 CLR . . . I 5 19.969 96.285 49.202 1 133.62 ? H122 CLR 508 A 1 HETATM 45 H H14 CLR . . . I 5 19.772 96.003 46.794 1 133.36 ? H14 CLR 508 A 1 HETATM 46 H H151 CLR . . . I 5 19.03 94.758 44.926 1 132.97 ? H151 CLR 508 A 1 HETATM 47 H H152 CLR . . . I 5 17.455 94.501 45.586 1 132.97 ? H152 CLR 508 A 1 HETATM 48 H H161 CLR . . . I 5 18.324 92.566 46.566 1 134.08 ? H161 CLR 508 A 1 HETATM 49 H H162 CLR . . . I 5 19.95 93.048 46.23 1 134.08 ? H162 CLR 508 A 1 HETATM 50 H H17 CLR . . . I 5 20.255 94.125 48.253 1 136.47 ? H17 CLR 508 A 1 HETATM 51 H H181 CLR . . . I 5 16.502 94.21 47.662 1 134.45 ? H181 CLR 508 A 1 HETATM 52 H H182 CLR . . . I 5 16.308 95.823 48.312 1 134.45 ? H182 CLR 508 A 1 HETATM 53 H H183 CLR . . . I 5 16.663 94.486 49.373 1 134.45 ? H183 CLR 508 A 1 HETATM 54 H H191 CLR . . . I 5 15.801 100.494 47.664 1 136.53 ? H191 CLR 508 A 1 HETATM 55 H H192 CLR . . . I 5 15.705 98.82 47.213 1 136.53 ? H192 CLR 508 A 1 HETATM 56 H H193 CLR . . . I 5 16.141 99.262 48.851 1 136.53 ? H193 CLR 508 A 1 HETATM 57 H H20 CLR . . . I 5 17.909 92.407 48.989 1 141.52 ? H20 CLR 508 A 1 HETATM 58 H H211 CLR . . . I 5 18.471 93.939 50.856 1 140.9 ? H211 CLR 508 A 1 HETATM 59 H H212 CLR . . . I 5 18.95 92.304 51.251 1 140.9 ? H212 CLR 508 A 1 HETATM 60 H H213 CLR . . . I 5 20.155 93.469 50.762 1 140.9 ? H213 CLR 508 A 1 HETATM 61 H H221 CLR . . . I 5 19.716 91.244 47.716 1 148.12 ? H221 CLR 508 A 1 HETATM 62 H H222 CLR . . . I 5 20.895 91.859 48.809 1 148.12 ? H222 CLR 508 A 1 HETATM 63 H H231 CLR . . . I 5 19.995 90.462 50.619 1 154.95 ? H231 CLR 508 A 1 HETATM 64 H H232 CLR . . . I 5 18.613 90.052 49.68 1 154.95 ? H232 CLR 508 A 1 HETATM 65 H H241 CLR . . . I 5 21.488 89.394 48.931 1 161.29 ? H241 CLR 508 A 1 HETATM 66 H H242 CLR . . . I 5 20.117 88.936 47.999 1 161.29 ? H242 CLR 508 A 1 HETATM 67 H H25 CLR . . . I 5 19.315 87.496 49.818 1 167.03 ? H25 CLR 508 A 1 HETATM 68 H H261 CLR . . . I 5 20.294 88.659 51.789 1 169.44 ? H261 CLR 508 A 1 HETATM 69 H H262 CLR . . . I 5 21.901 88.244 51.245 1 169.44 ? H262 CLR 508 A 1 HETATM 70 H H263 CLR . . . I 5 20.806 86.99 51.753 1 169.44 ? H263 CLR 508 A 1 HETATM 71 H H271 CLR . . . I 5 22.183 86.996 48.933 1 168.86 ? H271 CLR 508 A 1 HETATM 72 H H272 CLR . . . I 5 20.754 86.57 48.038 1 168.86 ? H272 CLR 508 A 1 HETATM 73 H H273 CLR . . . I 5 21.105 85.778 49.558 1 168.86 ? H273 CLR 508 A 1 HETATM 74 H H1 CLR . . . I 5 18.864 104.172 46.081 1 127.98 ? H1 CLR 508 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 74 #