data_5NM4 # _model_server_result.job_id OqfZEFVlF4pxiE5UOYhA5A _model_server_result.datetime_utc '2024-10-19 06:52:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nm4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":509}' # _entry.id 5NM4 # _exptl.entry_id 5NM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NM4 _cell.length_a 39.89 _cell.length_b 179.15 _cell.length_c 141.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 80 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? disulf ? disulf2 A SG CYS 83 A CYS 83 1_555 A SG CYS 155 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? disulf ? disulf3 A SG CYS 86 A CYS 86 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? disulf ? disulf4 A SG CYS 364 A CYS 364 1_555 A SG CYS 367 A CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A OD1 ASP 61 A ASP 61 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc2 A OG SER 100 A SER 100 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc3 G NA NA . A NA 506 1_555 L O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc4 G NA NA . A NA 506 1_555 L O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NM4 _atom_sites.fract_transf_matrix[1][1] 0.025069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007082 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLA A 1 501 1 OLA OLA . C 2 OLA A 1 502 2 OLA OLA . D 2 OLA A 1 503 3 OLA OLA . E 2 OLA A 1 504 4 OLA OLA . F 2 OLA A 1 505 5 OLA OLA . G 3 NA A 1 506 1 NA NA . H 4 ZMA A 1 507 1 ZMA ZMA . I 5 CLR A 1 508 1 CLR XXX . J 5 CLR A 1 509 2 CLR XXX . K 5 CLR A 1 510 3 CLR XXX . L 6 HOH A 1 601 50 HOH HOH . L 6 HOH A 2 602 37 HOH HOH . L 6 HOH A 3 603 47 HOH HOH . L 6 HOH A 4 604 57 HOH HOH . L 6 HOH A 5 605 16 HOH HOH . L 6 HOH A 6 606 20 HOH HOH . L 6 HOH A 7 607 52 HOH HOH . L 6 HOH A 8 608 53 HOH HOH . L 6 HOH A 9 609 21 HOH HOH . L 6 HOH A 10 610 15 HOH HOH . L 6 HOH A 11 611 26 HOH HOH . L 6 HOH A 12 612 43 HOH HOH . L 6 HOH A 13 613 9 HOH HOH . L 6 HOH A 14 614 2 HOH HOH . L 6 HOH A 15 615 3 HOH HOH . L 6 HOH A 16 616 34 HOH HOH . L 6 HOH A 17 617 32 HOH HOH . L 6 HOH A 18 618 4 HOH HOH . L 6 HOH A 19 619 41 HOH HOH . L 6 HOH A 20 620 18 HOH HOH . L 6 HOH A 21 621 23 HOH HOH . L 6 HOH A 22 622 39 HOH HOH . L 6 HOH A 23 623 8 HOH HOH . L 6 HOH A 24 624 19 HOH HOH . L 6 HOH A 25 625 17 HOH HOH . L 6 HOH A 26 626 38 HOH HOH . L 6 HOH A 27 627 12 HOH HOH . L 6 HOH A 28 628 51 HOH HOH . L 6 HOH A 29 629 14 HOH HOH . L 6 HOH A 30 630 22 HOH HOH . L 6 HOH A 31 631 6 HOH HOH . L 6 HOH A 32 632 35 HOH HOH . L 6 HOH A 33 633 5 HOH HOH . L 6 HOH A 34 634 7 HOH HOH . L 6 HOH A 35 635 36 HOH HOH . L 6 HOH A 36 636 13 HOH HOH . L 6 HOH A 37 637 59 HOH HOH . L 6 HOH A 38 638 33 HOH HOH . L 6 HOH A 39 639 1 HOH HOH . L 6 HOH A 40 640 46 HOH HOH . L 6 HOH A 41 641 24 HOH HOH . L 6 HOH A 42 642 54 HOH HOH . L 6 HOH A 43 643 29 HOH HOH . L 6 HOH A 44 644 31 HOH HOH . L 6 HOH A 45 645 28 HOH HOH . L 6 HOH A 46 646 11 HOH HOH . L 6 HOH A 47 647 10 HOH HOH . L 6 HOH A 48 648 42 HOH HOH . L 6 HOH A 49 649 44 HOH HOH . L 6 HOH A 50 650 30 HOH HOH . L 6 HOH A 51 651 45 HOH HOH . L 6 HOH A 52 652 25 HOH HOH . L 6 HOH A 53 653 48 HOH HOH . L 6 HOH A 54 654 40 HOH HOH . L 6 HOH A 55 655 55 HOH HOH . L 6 HOH A 56 656 58 HOH HOH . L 6 HOH A 57 657 27 HOH HOH . L 6 HOH A 58 658 56 HOH HOH . L 6 HOH A 59 659 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . J 5 23.033 97.903 48.85 1 84.52 ? C1 CLR 509 A 1 HETATM 2 C C2 CLR . . . J 5 22.838 99.416 48.89 1 80.29 ? C2 CLR 509 A 1 HETATM 3 C C3 CLR . . . J 5 21.811 99.805 49.93 1 79.47 ? C3 CLR 509 A 1 HETATM 4 C C4 CLR . . . J 5 22.224 99.289 51.295 1 83.94 ? C4 CLR 509 A 1 HETATM 5 C C5 CLR . . . J 5 22.491 97.803 51.282 1 89.93 ? C5 CLR 509 A 1 HETATM 6 C C6 CLR . . . J 5 21.936 97.008 52.187 1 94.66 ? C6 CLR 509 A 1 HETATM 7 C C7 CLR . . . J 5 22.144 95.529 52.276 1 99.72 ? C7 CLR 509 A 1 HETATM 8 C C8 CLR . . . J 5 23.363 95.066 51.482 1 103.88 ? C8 CLR 509 A 1 HETATM 9 C C9 CLR . . . J 5 23.37 95.747 50.107 1 100.14 ? C9 CLR 509 A 1 HETATM 10 C C10 CLR . . . J 5 23.447 97.3 50.205 1 91.63 ? C10 CLR 509 A 1 HETATM 11 C C11 CLR . . . J 5 24.415 95.151 49.149 1 104.7 ? C11 CLR 509 A 1 HETATM 12 C C12 CLR . . . J 5 24.417 93.626 49.089 1 109.37 ? C12 CLR 509 A 1 HETATM 13 C C13 CLR . . . J 5 24.538 92.993 50.48 1 114.37 ? C13 CLR 509 A 1 HETATM 14 C C14 CLR . . . J 5 23.35 93.544 51.298 1 111.16 ? C14 CLR 509 A 1 HETATM 15 C C15 CLR . . . J 5 23.302 92.64 52.533 1 114.74 ? C15 CLR 509 A 1 HETATM 16 C C16 CLR . . . J 5 23.803 91.273 52.042 1 118.31 ? C16 CLR 509 A 1 HETATM 17 C C17 CLR . . . J 5 24.26 91.474 50.581 1 121.22 ? C17 CLR 509 A 1 HETATM 18 C C18 CLR . . . J 5 25.892 93.349 51.123 1 115.15 ? C18 CLR 509 A 1 HETATM 19 C C19 CLR . . . J 5 24.864 97.782 50.577 1 92.01 ? C19 CLR 509 A 1 HETATM 20 C C20 CLR . . . J 5 25.361 90.47 50.181 1 129.85 ? C20 CLR 509 A 1 HETATM 21 C C21 CLR . . . J 5 25.895 90.684 48.768 1 130.1 ? C21 CLR 509 A 1 HETATM 22 C C22 CLR . . . J 5 24.855 89.027 50.345 1 137.59 ? C22 CLR 509 A 1 HETATM 23 C C23 CLR . . . J 5 25.877 87.945 50.032 1 144.81 ? C23 CLR 509 A 1 HETATM 24 C C24 CLR . . . J 5 25.387 86.546 50.359 1 151.94 ? C24 CLR 509 A 1 HETATM 25 C C25 CLR . . . J 5 25.972 85.91 51.601 1 158.5 ? C25 CLR 509 A 1 HETATM 26 C C26 CLR . . . J 5 25.377 84.535 51.832 1 160.4 ? C26 CLR 509 A 1 HETATM 27 C C27 CLR . . . J 5 25.796 86.776 52.831 1 161.43 ? C27 CLR 509 A 1 HETATM 28 O O1 CLR . . . J 5 21.677 101.222 49.97 1 75.65 ? O1 CLR 509 A 1 HETATM 29 H H11 CLR . . . J 5 23.762 97.657 48.08 1 101.42 ? H11 CLR 509 A 1 HETATM 30 H H12 CLR . . . J 5 22.107 97.441 48.509 1 101.42 ? H12 CLR 509 A 1 HETATM 31 H H21 CLR . . . J 5 22.539 99.76 47.9 1 96.35 ? H21 CLR 509 A 1 HETATM 32 H H22 CLR . . . J 5 23.784 99.923 49.076 1 96.35 ? H22 CLR 509 A 1 HETATM 33 H H3 CLR . . . J 5 20.848 99.364 49.678 1 95.37 ? H3 CLR 509 A 1 HETATM 34 H H41 CLR . . . J 5 23.101 99.82 51.663 1 100.73 ? H41 CLR 509 A 1 HETATM 35 H H42 CLR . . . J 5 21.446 99.537 52.016 1 100.73 ? H42 CLR 509 A 1 HETATM 36 H H6 CLR . . . J 5 21.268 97.402 52.952 1 113.6 ? H6 CLR 509 A 1 HETATM 37 H H71 CLR . . . J 5 21.253 95.017 51.916 1 119.67 ? H71 CLR 509 A 1 HETATM 38 H H72 CLR . . . J 5 22.222 95.259 53.328 1 119.67 ? H72 CLR 509 A 1 HETATM 39 H H8 CLR . . . J 5 24.262 95.346 52.03 1 124.65 ? H8 CLR 509 A 1 HETATM 40 H H9 CLR . . . J 5 22.398 95.527 49.666 1 120.17 ? H9 CLR 509 A 1 HETATM 41 H H111 CLR . . . J 5 25.41 95.486 49.44 1 125.64 ? H111 CLR 509 A 1 HETATM 42 H H112 CLR . . . J 5 24.279 95.543 48.142 1 125.64 ? H112 CLR 509 A 1 HETATM 43 H H121 CLR . . . J 5 25.226 93.281 48.447 1 131.24 ? H121 CLR 509 A 1 HETATM 44 H H122 CLR . . . J 5 23.51 93.271 48.601 1 131.24 ? H122 CLR 509 A 1 HETATM 45 H H14 CLR . . . J 5 22.439 93.328 50.741 1 133.39 ? H14 CLR 509 A 1 HETATM 46 H H151 CLR . . . J 5 22.301 92.587 52.96 1 137.69 ? H151 CLR 509 A 1 HETATM 47 H H152 CLR . . . J 5 23.925 93.029 53.337 1 137.69 ? H152 CLR 509 A 1 HETATM 48 H H161 CLR . . . J 5 24.598 90.894 52.684 1 141.97 ? H161 CLR 509 A 1 HETATM 49 H H162 CLR . . . J 5 23.008 90.531 52.105 1 141.97 ? H162 CLR 509 A 1 HETATM 50 H H17 CLR . . . J 5 23.421 91.253 49.923 1 145.47 ? H17 CLR 509 A 1 HETATM 51 H H181 CLR . . . J 5 25.997 92.948 52.13 1 138.18 ? H181 CLR 509 A 1 HETATM 52 H H182 CLR . . . J 5 26.031 94.427 51.195 1 138.18 ? H182 CLR 509 A 1 HETATM 53 H H183 CLR . . . J 5 26.74 92.967 50.556 1 138.18 ? H183 CLR 509 A 1 HETATM 54 H H191 CLR . . . J 5 24.936 98.865 50.664 1 110.41 ? H191 CLR 509 A 1 HETATM 55 H H192 CLR . . . J 5 25.188 97.387 51.539 1 110.41 ? H192 CLR 509 A 1 HETATM 56 H H193 CLR . . . J 5 25.607 97.482 49.841 1 110.41 ? H193 CLR 509 A 1 HETATM 57 H H20 CLR . . . J 5 26.195 90.613 50.867 1 155.82 ? H20 CLR 509 A 1 HETATM 58 H H211 CLR . . . J 5 26.331 91.674 48.642 1 156.12 ? H211 CLR 509 A 1 HETATM 59 H H212 CLR . . . J 5 26.67 89.964 48.509 1 156.12 ? H212 CLR 509 A 1 HETATM 60 H H213 CLR . . . J 5 25.113 90.583 48.017 1 156.12 ? H213 CLR 509 A 1 HETATM 61 H H221 CLR . . . J 5 24.507 88.855 51.363 1 165.1 ? H221 CLR 509 A 1 HETATM 62 H H222 CLR . . . J 5 23.97 88.886 49.726 1 165.1 ? H222 CLR 509 A 1 HETATM 63 H H231 CLR . . . J 5 26.157 87.982 48.981 1 173.77 ? H231 CLR 509 A 1 HETATM 64 H H232 CLR . . . J 5 26.804 88.156 50.562 1 173.77 ? H232 CLR 509 A 1 HETATM 65 H H241 CLR . . . J 5 25.584 85.901 49.503 1 182.32 ? H241 CLR 509 A 1 HETATM 66 H H242 CLR . . . J 5 24.302 86.559 50.446 1 182.32 ? H242 CLR 509 A 1 HETATM 67 H H25 CLR . . . J 5 27.043 85.785 51.445 1 190.19 ? H25 CLR 509 A 1 HETATM 68 H H261 CLR . . . J 5 25.563 83.853 51.004 1 192.48 ? H261 CLR 509 A 1 HETATM 69 H H262 CLR . . . J 5 24.297 84.579 51.964 1 192.48 ? H262 CLR 509 A 1 HETATM 70 H H263 CLR . . . J 5 25.771 84.053 52.726 1 192.48 ? H263 CLR 509 A 1 HETATM 71 H H271 CLR . . . J 5 24.748 86.972 53.049 1 193.71 ? H271 CLR 509 A 1 HETATM 72 H H272 CLR . . . J 5 26.269 87.751 52.727 1 193.71 ? H272 CLR 509 A 1 HETATM 73 H H273 CLR . . . J 5 26.212 86.316 53.727 1 193.71 ? H273 CLR 509 A 1 HETATM 74 H H1 CLR . . . J 5 20.825 101.401 50.446 1 90.78 ? H1 CLR 509 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 74 #