data_5NM5 # _model_server_result.job_id f_rHkwocHBNkafNlg-mGfQ _model_server_result.datetime_utc '2024-11-05 04:38:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nm5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 5NM5 # _exptl.entry_id 5NM5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.32 _cell.angle_gamma 90 _cell.entry_id 5NM5 _cell.length_a 72.92 _cell.length_b 85.02 _cell.length_c 84.34 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NM5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O3G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc2 D O2B GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc3 E MG MG . A MG 502 1_555 H O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc4 E MG MG . A MG 502 1_555 H O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc5 E MG MG . A MG 502 1_555 H O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc6 E MG MG . A MG 502 1_555 H O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NM5 _atom_sites.fract_transf_matrix[1][1] 0.013714 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001762 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 501 1 GTP GTP . E 5 MG A 1 502 503 MG MG . F 6 GDP B 1 501 1 GDP GDP . G 7 LOC B 1 502 1 LOC LOC . H 8 HOH A 1 601 38 HOH HOH . H 8 HOH A 2 602 7 HOH HOH . H 8 HOH A 3 603 8 HOH HOH . H 8 HOH A 4 604 13 HOH HOH . H 8 HOH A 5 605 41 HOH HOH . H 8 HOH A 6 606 25 HOH HOH . H 8 HOH A 7 607 18 HOH HOH . H 8 HOH A 8 608 10 HOH HOH . H 8 HOH A 9 609 12 HOH HOH . H 8 HOH A 10 610 29 HOH HOH . H 8 HOH A 11 611 11 HOH HOH . H 8 HOH A 12 612 26 HOH HOH . H 8 HOH A 13 613 33 HOH HOH . H 8 HOH A 14 614 48 HOH HOH . H 8 HOH A 15 615 30 HOH HOH . H 8 HOH A 16 616 3 HOH HOH . H 8 HOH A 17 617 32 HOH HOH . H 8 HOH A 18 618 30 HOH HOH . H 8 HOH A 19 619 10 HOH HOH . H 8 HOH A 20 620 7 HOH HOH . H 8 HOH A 21 621 39 HOH HOH . H 8 HOH A 22 622 41 HOH HOH . H 8 HOH A 23 623 27 HOH HOH . H 8 HOH A 24 624 33 HOH HOH . H 8 HOH A 25 625 4 HOH HOH . H 8 HOH A 26 626 28 HOH HOH . H 8 HOH A 27 627 20 HOH HOH . H 8 HOH A 28 628 40 HOH HOH . H 8 HOH A 29 629 43 HOH HOH . H 8 HOH A 30 630 47 HOH HOH . H 8 HOH A 31 631 50 HOH HOH . I 8 HOH B 1 601 37 HOH HOH . I 8 HOH B 2 602 22 HOH HOH . I 8 HOH B 3 603 36 HOH HOH . I 8 HOH B 4 604 2 HOH HOH . I 8 HOH B 5 605 12 HOH HOH . I 8 HOH B 6 606 6 HOH HOH . I 8 HOH B 7 607 11 HOH HOH . I 8 HOH B 8 608 53 HOH HOH . I 8 HOH B 9 609 16 HOH HOH . I 8 HOH B 10 610 38 HOH HOH . I 8 HOH B 11 611 8 HOH HOH . I 8 HOH B 12 612 1 HOH HOH . I 8 HOH B 13 613 23 HOH HOH . I 8 HOH B 14 614 14 HOH HOH . I 8 HOH B 15 615 37 HOH HOH . I 8 HOH B 16 616 22 HOH HOH . I 8 HOH B 17 617 26 HOH HOH . I 8 HOH B 18 618 46 HOH HOH . I 8 HOH B 19 619 49 HOH HOH . I 8 HOH B 20 620 15 HOH HOH . I 8 HOH B 21 621 18 HOH HOH . I 8 HOH B 22 622 45 HOH HOH . I 8 HOH B 23 623 2 HOH HOH . I 8 HOH B 24 624 52 HOH HOH . I 8 HOH B 25 625 44 HOH HOH . I 8 HOH B 26 626 32 HOH HOH . I 8 HOH B 27 627 5 HOH HOH . J 8 HOH F 1 201 35 HOH HOH . J 8 HOH F 2 202 21 HOH HOH . J 8 HOH F 3 203 23 HOH HOH . J 8 HOH F 4 204 24 HOH HOH . J 8 HOH F 5 205 36 HOH HOH . J 8 HOH F 6 206 51 HOH HOH . J 8 HOH F 7 207 9 HOH HOH . J 8 HOH F 8 208 13 HOH HOH . J 8 HOH F 9 209 3 HOH HOH . J 8 HOH F 10 210 35 HOH HOH . J 8 HOH F 11 211 17 HOH HOH . J 8 HOH F 12 212 42 HOH HOH . J 8 HOH F 13 213 34 HOH HOH . J 8 HOH F 14 214 19 HOH HOH . J 8 HOH F 15 215 29 HOH HOH . J 8 HOH F 16 216 31 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 100.311 _atom_site.Cartn_y 21.249 _atom_site.Cartn_z 24.221 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.08 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 1 #