data_5NM7 # _model_server_result.job_id 5tzvcn3UDRtLMnKcgH3FRA _model_server_result.datetime_utc '2024-10-19 16:37:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nm7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 5NM7 # _exptl.entry_id 5NM7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5NM7 _cell.length_a 154.615 _cell.length_b 154.615 _cell.length_c 125.823 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 120 n n N H GLY sing 121 n n N H2 GLY sing 122 n n CA C GLY sing 123 n n CA HA2 GLY sing 124 n n CA HA3 GLY sing 125 n n C O GLY doub 126 n n C OXT GLY sing 127 n n OXT HXT GLY sing 128 n n # _atom_sites.entry_id 5NM7 _atom_sites.fract_transf_matrix[1][1] 0.006468 _atom_sites.fract_transf_matrix[1][2] 0.003734 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GLY G 1 301 1 GLY GLY . D 2 GLY G 1 302 2 GLY GLY . E 2 GLY G 1 303 5 GLY GLY . F 3 PGE G 1 304 1 PGE PEG . G 2 GLY A 1 301 3 GLY GLY . H 2 GLY A 1 302 4 GLY GLY . I 4 HOH G 1 401 181 HOH HOH . I 4 HOH G 2 402 192 HOH HOH . I 4 HOH G 3 403 157 HOH HOH . I 4 HOH G 4 404 167 HOH HOH . I 4 HOH G 5 405 90 HOH HOH . I 4 HOH G 6 406 71 HOH HOH . I 4 HOH G 7 407 168 HOH HOH . I 4 HOH G 8 408 55 HOH HOH . I 4 HOH G 9 409 87 HOH HOH . I 4 HOH G 10 410 172 HOH HOH . I 4 HOH G 11 411 102 HOH HOH . I 4 HOH G 12 412 58 HOH HOH . I 4 HOH G 13 413 23 HOH HOH . I 4 HOH G 14 414 12 HOH HOH . I 4 HOH G 15 415 7 HOH HOH . I 4 HOH G 16 416 70 HOH HOH . I 4 HOH G 17 417 57 HOH HOH . I 4 HOH G 18 418 42 HOH HOH . I 4 HOH G 19 419 67 HOH HOH . I 4 HOH G 20 420 153 HOH HOH . I 4 HOH G 21 421 24 HOH HOH . I 4 HOH G 22 422 36 HOH HOH . I 4 HOH G 23 423 32 HOH HOH . I 4 HOH G 24 424 173 HOH HOH . I 4 HOH G 25 425 148 HOH HOH . I 4 HOH G 26 426 115 HOH HOH . I 4 HOH G 27 427 9 HOH HOH . I 4 HOH G 28 428 38 HOH HOH . I 4 HOH G 29 429 93 HOH HOH . I 4 HOH G 30 430 190 HOH HOH . I 4 HOH G 31 431 79 HOH HOH . I 4 HOH G 32 432 108 HOH HOH . I 4 HOH G 33 433 189 HOH HOH . I 4 HOH G 34 434 65 HOH HOH . I 4 HOH G 35 435 18 HOH HOH . I 4 HOH G 36 436 98 HOH HOH . I 4 HOH G 37 437 27 HOH HOH . I 4 HOH G 38 438 72 HOH HOH . I 4 HOH G 39 439 30 HOH HOH . I 4 HOH G 40 440 166 HOH HOH . I 4 HOH G 41 441 136 HOH HOH . I 4 HOH G 42 442 8 HOH HOH . I 4 HOH G 43 443 26 HOH HOH . I 4 HOH G 44 444 28 HOH HOH . I 4 HOH G 45 445 138 HOH HOH . I 4 HOH G 46 446 21 HOH HOH . I 4 HOH G 47 447 147 HOH HOH . I 4 HOH G 48 448 20 HOH HOH . I 4 HOH G 49 449 202 HOH HOH . I 4 HOH G 50 450 169 HOH HOH . I 4 HOH G 51 451 34 HOH HOH . I 4 HOH G 52 452 86 HOH HOH . I 4 HOH G 53 453 194 HOH HOH . I 4 HOH G 54 454 5 HOH HOH . I 4 HOH G 55 455 133 HOH HOH . I 4 HOH G 56 456 73 HOH HOH . I 4 HOH G 57 457 165 HOH HOH . I 4 HOH G 58 458 97 HOH HOH . I 4 HOH G 59 459 174 HOH HOH . I 4 HOH G 60 460 142 HOH HOH . I 4 HOH G 61 461 116 HOH HOH . I 4 HOH G 62 462 177 HOH HOH . I 4 HOH G 63 463 41 HOH HOH . I 4 HOH G 64 464 89 HOH HOH . I 4 HOH G 65 465 140 HOH HOH . I 4 HOH G 66 466 61 HOH HOH . I 4 HOH G 67 467 146 HOH HOH . I 4 HOH G 68 468 6 HOH HOH . I 4 HOH G 69 469 37 HOH HOH . I 4 HOH G 70 470 59 HOH HOH . I 4 HOH G 71 471 14 HOH HOH . I 4 HOH G 72 472 85 HOH HOH . I 4 HOH G 73 473 35 HOH HOH . I 4 HOH G 74 474 155 HOH HOH . I 4 HOH G 75 475 135 HOH HOH . I 4 HOH G 76 476 139 HOH HOH . I 4 HOH G 77 477 15 HOH HOH . I 4 HOH G 78 478 114 HOH HOH . I 4 HOH G 79 479 119 HOH HOH . I 4 HOH G 80 480 200 HOH HOH . I 4 HOH G 81 481 176 HOH HOH . I 4 HOH G 82 482 193 HOH HOH . I 4 HOH G 83 483 111 HOH HOH . I 4 HOH G 84 484 10 HOH HOH . I 4 HOH G 85 485 62 HOH HOH . I 4 HOH G 86 486 144 HOH HOH . I 4 HOH G 87 487 191 HOH HOH . I 4 HOH G 88 488 77 HOH HOH . I 4 HOH G 89 489 22 HOH HOH . I 4 HOH G 90 490 143 HOH HOH . I 4 HOH G 91 491 43 HOH HOH . I 4 HOH G 92 492 109 HOH HOH . I 4 HOH G 93 493 149 HOH HOH . I 4 HOH G 94 494 76 HOH HOH . I 4 HOH G 95 495 91 HOH HOH . I 4 HOH G 96 496 163 HOH HOH . I 4 HOH G 97 497 112 HOH HOH . I 4 HOH G 98 498 158 HOH HOH . I 4 HOH G 99 499 162 HOH HOH . I 4 HOH G 100 500 171 HOH HOH . I 4 HOH G 101 501 113 HOH HOH . I 4 HOH G 102 502 182 HOH HOH . I 4 HOH G 103 503 180 HOH HOH . I 4 HOH G 104 504 170 HOH HOH . I 4 HOH G 105 505 141 HOH HOH . I 4 HOH G 106 506 178 HOH HOH . I 4 HOH G 107 507 106 HOH HOH . I 4 HOH G 108 508 179 HOH HOH . I 4 HOH G 109 509 48 HOH HOH . I 4 HOH G 110 510 83 HOH HOH . J 4 HOH A 1 401 49 HOH HOH . J 4 HOH A 2 402 95 HOH HOH . J 4 HOH A 3 403 60 HOH HOH . J 4 HOH A 4 404 185 HOH HOH . J 4 HOH A 5 405 25 HOH HOH . J 4 HOH A 6 406 82 HOH HOH . J 4 HOH A 7 407 53 HOH HOH . J 4 HOH A 8 408 159 HOH HOH . J 4 HOH A 9 409 122 HOH HOH . J 4 HOH A 10 410 68 HOH HOH . J 4 HOH A 11 411 128 HOH HOH . J 4 HOH A 12 412 195 HOH HOH . J 4 HOH A 13 413 184 HOH HOH . J 4 HOH A 14 414 64 HOH HOH . J 4 HOH A 15 415 88 HOH HOH . J 4 HOH A 16 416 50 HOH HOH . J 4 HOH A 17 417 120 HOH HOH . J 4 HOH A 18 418 198 HOH HOH . J 4 HOH A 19 419 197 HOH HOH . J 4 HOH A 20 420 121 HOH HOH . J 4 HOH A 21 421 80 HOH HOH . J 4 HOH A 22 422 66 HOH HOH . J 4 HOH A 23 423 47 HOH HOH . J 4 HOH A 24 424 124 HOH HOH . J 4 HOH A 25 425 94 HOH HOH . J 4 HOH A 26 426 39 HOH HOH . J 4 HOH A 27 427 29 HOH HOH . J 4 HOH A 28 428 19 HOH HOH . J 4 HOH A 29 429 127 HOH HOH . J 4 HOH A 30 430 11 HOH HOH . J 4 HOH A 31 431 130 HOH HOH . J 4 HOH A 32 432 44 HOH HOH . J 4 HOH A 33 433 56 HOH HOH . J 4 HOH A 34 434 31 HOH HOH . J 4 HOH A 35 435 78 HOH HOH . J 4 HOH A 36 436 81 HOH HOH . J 4 HOH A 37 437 187 HOH HOH . J 4 HOH A 38 438 51 HOH HOH . J 4 HOH A 39 439 161 HOH HOH . J 4 HOH A 40 440 96 HOH HOH . J 4 HOH A 41 441 74 HOH HOH . J 4 HOH A 42 442 13 HOH HOH . J 4 HOH A 43 443 152 HOH HOH . J 4 HOH A 44 444 17 HOH HOH . J 4 HOH A 45 445 104 HOH HOH . J 4 HOH A 46 446 52 HOH HOH . J 4 HOH A 47 447 160 HOH HOH . J 4 HOH A 48 448 183 HOH HOH . J 4 HOH A 49 449 75 HOH HOH . J 4 HOH A 50 450 69 HOH HOH . J 4 HOH A 51 451 164 HOH HOH . J 4 HOH A 52 452 199 HOH HOH . J 4 HOH A 53 453 92 HOH HOH . J 4 HOH A 54 454 118 HOH HOH . J 4 HOH A 55 455 186 HOH HOH . J 4 HOH A 56 456 117 HOH HOH . J 4 HOH A 57 457 125 HOH HOH . J 4 HOH A 58 458 154 HOH HOH . J 4 HOH A 59 459 201 HOH HOH . J 4 HOH A 60 460 105 HOH HOH . J 4 HOH A 61 461 126 HOH HOH . J 4 HOH A 62 462 151 HOH HOH . J 4 HOH A 63 463 156 HOH HOH . J 4 HOH A 64 464 175 HOH HOH . J 4 HOH A 65 465 188 HOH HOH . J 4 HOH A 66 466 145 HOH HOH . J 4 HOH A 67 467 123 HOH HOH . J 4 HOH A 68 468 101 HOH HOH . J 4 HOH A 69 469 196 HOH HOH . J 4 HOH A 70 470 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . G 2 -28.365 86.102 129.985 1 23.42 ? N GLY 301 A 1 HETATM 2 C CA GLY . . . G 2 -27.222 87.046 130.092 1 24.47 ? CA GLY 301 A 1 HETATM 3 C C GLY . . . G 2 -25.952 86.359 130.524 1 23.82 ? C GLY 301 A 1 HETATM 4 O O GLY . . . G 2 -25.889 85.122 130.47 1 22.97 ? O GLY 301 A 1 HETATM 5 O OXT GLY . . . G 2 -24.988 87.053 130.899 1 23.55 ? OXT GLY 301 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #