data_5NMC # _model_server_result.job_id f4JrMGvBcZo8z_zW94p80w _model_server_result.datetime_utc '2024-11-25 16:00:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nmc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":103}' # _entry.id 5NMC # _exptl.entry_id 5NMC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NMC _cell.length_a 43.79 _cell.length_b 50.32 _cell.length_c 93.95 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NMC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,R 1 1 B,J,K,L,M,S 2 1 C,N,O,P,Q,T 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 L N N ? 3 M N N ? 3 O N N ? 3 P N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N MET 1 A MET 1 1_555 F ZN ZN . A ZN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc2 A OE2 GLU 16 A GLU 16 1_555 F ZN ZN . A ZN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? metalc ? metalc3 A OE1 GLU 18 A GLU 18 1_555 G ZN ZN . A ZN 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc4 A OD1 ASP 21 A ASP 21 1_555 H ZN ZN . A ZN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc5 A OD2 ASP 39 A ASP 39 1_555 Q ZN ZN . C ZN 104 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc6 A OE2 GLU 51 A GLU 51 1_555 O ZN ZN . C ZN 102 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc7 D OXT ACT . A ACT 101 1_555 H ZN ZN . A ZN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc8 E O ACT . A ACT 102 1_555 G ZN ZN . A ZN 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc9 E OXT ACT . A ACT 102 1_555 G ZN ZN . A ZN 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc10 F ZN ZN . A ZN 103 3_555 B OE1 GLU 51 B GLU 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc11 F ZN ZN . A ZN 103 1_555 T O HOH . C HOH 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc12 G ZN ZN . A ZN 104 1_555 C OD1 ASP 21 C ASP 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc13 G ZN ZN . A ZN 104 1_555 T O HOH . C HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc14 H ZN ZN . A ZN 105 1_555 R O HOH . A HOH 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc15 H ZN ZN . A ZN 105 2_565 B OE1 GLU 18 B GLU 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc16 I ZN ZN . A ZN 106 1_555 R O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc17 I ZN ZN . A ZN 106 1_555 R O HOH . A HOH 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc18 I ZN ZN . A ZN 106 1_555 S O HOH . B HOH 241 2_564 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc19 I ZN ZN . A ZN 106 1_555 T O HOH . C HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc20 B N MET 1 B MET 1 1_555 M ZN ZN . B ZN 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc21 B NZ LYS 6 B LYS 6 1_555 L ZN ZN . B ZN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc22 B OE2 GLU 16 B GLU 16 1_555 M ZN ZN . B ZN 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc23 B OD1 ASP 21 B ASP 21 1_555 P ZN ZN . C ZN 103 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc24 B NE2 HIS 68 B HIS 68 1_555 L ZN ZN . B ZN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc25 J O ACT . B ACT 101 1_555 P ZN ZN . C ZN 103 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc26 K OXT ACT . B ACT 102 1_555 L ZN ZN . B ZN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.71 ? metalc ? metalc27 M ZN ZN . B ZN 104 1_555 S O HOH . B HOH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc28 M ZN ZN . B ZN 104 3_645 C OE2 GLU 51 C GLU 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? metalc ? metalc29 S O HOH . B HOH 207 2_564 O ZN ZN . C ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc30 S O HOH . B HOH 241 2_564 P ZN ZN . C ZN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? metalc ? metalc31 C N MET 1 C MET 1 1_555 O ZN ZN . C ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc32 C OE1 GLU 16 C GLU 16 1_555 O ZN ZN . C ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc33 C OE1 GLU 18 C GLU 18 1_555 P ZN ZN . C ZN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc34 C NE2 HIS 68 C HIS 68 1_555 Q ZN ZN . C ZN 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc35 N O ACT . C ACT 101 1_555 Q ZN ZN . C ZN 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc36 Q ZN ZN . C ZN 104 1_555 T O HOH . C HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NMC _atom_sites.fract_transf_matrix[1][1] 0.022836 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ACT A 1 101 2 ACT ACT . E 2 ACT A 1 102 3 ACT ACT . F 3 ZN A 1 103 2 ZN ZN . G 3 ZN A 1 104 5 ZN ZN . H 3 ZN A 1 105 6 ZN ZN . I 3 ZN A 1 106 8 ZN ZN . J 2 ACT B 1 101 1 ACT ACT . K 2 ACT B 1 102 4 ACT ACT . L 3 ZN B 1 103 1 ZN ZN . M 3 ZN B 1 104 3 ZN ZN . N 2 ACT C 1 101 5 ACT ACT . O 3 ZN C 1 102 4 ZN ZN . P 3 ZN C 1 103 7 ZN ZN . Q 3 ZN C 1 104 9 ZN ZN . R 4 HOH A 1 201 7 HOH HOH . R 4 HOH A 2 202 63 HOH HOH . R 4 HOH A 3 203 37 HOH HOH . R 4 HOH A 4 204 78 HOH HOH . R 4 HOH A 5 205 14 HOH HOH . R 4 HOH A 6 206 41 HOH HOH . R 4 HOH A 7 207 72 HOH HOH . R 4 HOH A 8 208 5 HOH HOH . R 4 HOH A 9 209 32 HOH HOH . R 4 HOH A 10 210 86 HOH HOH . R 4 HOH A 11 211 136 HOH HOH . R 4 HOH A 12 212 161 HOH HOH . R 4 HOH A 13 213 130 HOH HOH . R 4 HOH A 14 214 18 HOH HOH . R 4 HOH A 15 215 2 HOH HOH . R 4 HOH A 16 216 95 HOH HOH . R 4 HOH A 17 217 69 HOH HOH . R 4 HOH A 18 218 164 HOH HOH . R 4 HOH A 19 219 66 HOH HOH . R 4 HOH A 20 220 9 HOH HOH . R 4 HOH A 21 221 138 HOH HOH . R 4 HOH A 22 222 132 HOH HOH . R 4 HOH A 23 223 43 HOH HOH . R 4 HOH A 24 224 107 HOH HOH . R 4 HOH A 25 225 10 HOH HOH . R 4 HOH A 26 226 98 HOH HOH . R 4 HOH A 27 227 163 HOH HOH . R 4 HOH A 28 228 11 HOH HOH . R 4 HOH A 29 229 33 HOH HOH . R 4 HOH A 30 230 111 HOH HOH . R 4 HOH A 31 231 17 HOH HOH . R 4 HOH A 32 232 62 HOH HOH . R 4 HOH A 33 233 85 HOH HOH . R 4 HOH A 34 234 67 HOH HOH . R 4 HOH A 35 235 28 HOH HOH . R 4 HOH A 36 236 93 HOH HOH . R 4 HOH A 37 237 47 HOH HOH . R 4 HOH A 38 238 52 HOH HOH . R 4 HOH A 39 239 131 HOH HOH . R 4 HOH A 40 240 46 HOH HOH . R 4 HOH A 41 241 30 HOH HOH . R 4 HOH A 42 242 42 HOH HOH . R 4 HOH A 43 243 141 HOH HOH . R 4 HOH A 44 244 34 HOH HOH . R 4 HOH A 45 245 1 HOH HOH . R 4 HOH A 46 246 113 HOH HOH . R 4 HOH A 47 247 92 HOH HOH . R 4 HOH A 48 248 50 HOH HOH . R 4 HOH A 49 249 26 HOH HOH . R 4 HOH A 50 250 94 HOH HOH . R 4 HOH A 51 251 139 HOH HOH . R 4 HOH A 52 252 76 HOH HOH . R 4 HOH A 53 253 29 HOH HOH . R 4 HOH A 54 254 160 HOH HOH . R 4 HOH A 55 255 154 HOH HOH . R 4 HOH A 56 256 118 HOH HOH . R 4 HOH A 57 257 90 HOH HOH . R 4 HOH A 58 258 120 HOH HOH . R 4 HOH A 59 259 116 HOH HOH . R 4 HOH A 60 260 88 HOH HOH . R 4 HOH A 61 261 153 HOH HOH . R 4 HOH A 62 262 159 HOH HOH . R 4 HOH A 63 263 137 HOH HOH . R 4 HOH A 64 264 115 HOH HOH . S 4 HOH B 1 201 15 HOH HOH . S 4 HOH B 2 202 70 HOH HOH . S 4 HOH B 3 203 97 HOH HOH . S 4 HOH B 4 204 104 HOH HOH . S 4 HOH B 5 205 12 HOH HOH . S 4 HOH B 6 206 145 HOH HOH . S 4 HOH B 7 207 53 HOH HOH . S 4 HOH B 8 208 31 HOH HOH . S 4 HOH B 9 209 166 HOH HOH . S 4 HOH B 10 210 59 HOH HOH . S 4 HOH B 11 211 13 HOH HOH . S 4 HOH B 12 212 81 HOH HOH . S 4 HOH B 13 213 114 HOH HOH . S 4 HOH B 14 214 39 HOH HOH . S 4 HOH B 15 215 134 HOH HOH . S 4 HOH B 16 216 165 HOH HOH . S 4 HOH B 17 217 35 HOH HOH . S 4 HOH B 18 218 8 HOH HOH . S 4 HOH B 19 219 23 HOH HOH . S 4 HOH B 20 220 106 HOH HOH . S 4 HOH B 21 221 71 HOH HOH . S 4 HOH B 22 222 38 HOH HOH . S 4 HOH B 23 223 49 HOH HOH . S 4 HOH B 24 224 82 HOH HOH . S 4 HOH B 25 225 60 HOH HOH . S 4 HOH B 26 226 21 HOH HOH . S 4 HOH B 27 227 169 HOH HOH . S 4 HOH B 28 228 4 HOH HOH . S 4 HOH B 29 229 99 HOH HOH . S 4 HOH B 30 230 73 HOH HOH . S 4 HOH B 31 231 140 HOH HOH . S 4 HOH B 32 232 65 HOH HOH . S 4 HOH B 33 233 143 HOH HOH . S 4 HOH B 34 234 96 HOH HOH . S 4 HOH B 35 235 22 HOH HOH . S 4 HOH B 36 236 144 HOH HOH . S 4 HOH B 37 237 20 HOH HOH . S 4 HOH B 38 238 27 HOH HOH . S 4 HOH B 39 239 101 HOH HOH . S 4 HOH B 40 240 162 HOH HOH . S 4 HOH B 41 241 51 HOH HOH . S 4 HOH B 42 242 45 HOH HOH . S 4 HOH B 43 243 77 HOH HOH . S 4 HOH B 44 244 168 HOH HOH . S 4 HOH B 45 245 129 HOH HOH . S 4 HOH B 46 246 146 HOH HOH . S 4 HOH B 47 247 68 HOH HOH . S 4 HOH B 48 248 142 HOH HOH . S 4 HOH B 49 249 58 HOH HOH . S 4 HOH B 50 250 124 HOH HOH . S 4 HOH B 51 251 121 HOH HOH . S 4 HOH B 52 252 167 HOH HOH . S 4 HOH B 53 253 126 HOH HOH . T 4 HOH C 1 201 110 HOH HOH . T 4 HOH C 2 202 87 HOH HOH . T 4 HOH C 3 203 149 HOH HOH . T 4 HOH C 4 204 108 HOH HOH . T 4 HOH C 5 205 128 HOH HOH . T 4 HOH C 6 206 125 HOH HOH . T 4 HOH C 7 207 80 HOH HOH . T 4 HOH C 8 208 55 HOH HOH . T 4 HOH C 9 209 135 HOH HOH . T 4 HOH C 10 210 44 HOH HOH . T 4 HOH C 11 211 148 HOH HOH . T 4 HOH C 12 212 56 HOH HOH . T 4 HOH C 13 213 74 HOH HOH . T 4 HOH C 14 214 54 HOH HOH . T 4 HOH C 15 215 147 HOH HOH . T 4 HOH C 16 216 155 HOH HOH . T 4 HOH C 17 217 89 HOH HOH . T 4 HOH C 18 218 133 HOH HOH . T 4 HOH C 19 219 24 HOH HOH . T 4 HOH C 20 220 25 HOH HOH . T 4 HOH C 21 221 36 HOH HOH . T 4 HOH C 22 222 64 HOH HOH . T 4 HOH C 23 223 3 HOH HOH . T 4 HOH C 24 224 100 HOH HOH . T 4 HOH C 25 225 156 HOH HOH . T 4 HOH C 26 226 57 HOH HOH . T 4 HOH C 27 227 151 HOH HOH . T 4 HOH C 28 228 152 HOH HOH . T 4 HOH C 29 229 6 HOH HOH . T 4 HOH C 30 230 105 HOH HOH . T 4 HOH C 31 231 127 HOH HOH . T 4 HOH C 32 232 109 HOH HOH . T 4 HOH C 33 233 75 HOH HOH . T 4 HOH C 34 234 16 HOH HOH . T 4 HOH C 35 235 79 HOH HOH . T 4 HOH C 36 236 61 HOH HOH . T 4 HOH C 37 237 112 HOH HOH . T 4 HOH C 38 238 40 HOH HOH . T 4 HOH C 39 239 84 HOH HOH . T 4 HOH C 40 240 123 HOH HOH . T 4 HOH C 41 241 150 HOH HOH . T 4 HOH C 42 242 48 HOH HOH . T 4 HOH C 43 243 117 HOH HOH . T 4 HOH C 44 244 103 HOH HOH . T 4 HOH C 45 245 158 HOH HOH . T 4 HOH C 46 246 157 HOH HOH . T 4 HOH C 47 247 19 HOH HOH . T 4 HOH C 48 248 91 HOH HOH . T 4 HOH C 49 249 83 HOH HOH . T 4 HOH C 50 250 119 HOH HOH . T 4 HOH C 51 251 102 HOH HOH . T 4 HOH C 52 252 122 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 3 _atom_site.Cartn_x 11.611 _atom_site.Cartn_y 25.131 _atom_site.Cartn_z 22.959 _atom_site.occupancy 0.67 _atom_site.B_iso_or_equiv 13.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 103 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #