data_5NMF
#
_model_server_result.job_id            qJ6jhshjRIoYnOBfZKTklQ 
_model_server_result.datetime_utc      '2025-04-12 21:28:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nmf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"QA","auth_seq_id":307}' 
#
_entry.id    5NMF 
#
_exptl.entry_id    5NMF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NMF 
_cell.length_a            207.59 
_cell.length_b            84.71 
_cell.length_c            112.12 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NMF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? pentameric 5 author_defined_assembly 1 
? pentameric 5 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,SA,TA,UA,VA 1 1 
F,G,H,I,J,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,WA,XA,YA,ZA,AB 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 M N N 
? 9 N N N 
? 9 O N N 
? 9 P N N 
? 9 V N N 
? 9 W N N 
? 9 X N N 
? 9 Y N N 
? 9 FA N N 
? 9 GA N N 
? 9 QA N N 
? 9 RA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf4 D SG CYS 22 D CYS 23 1_555 D SG CYS 88 D CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
disulf ? disulf5 D SG CYS 133 D CYS 134 1_555 D SG CYS 183 D CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
disulf ? disulf6 D SG CYS 158 D CYS 159 1_555 E SG CYS 168 E CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
disulf ? disulf7 E SG CYS 22 E CYS 23 1_555 E SG CYS 90 E CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
disulf ? disulf8 E SG CYS 142 E CYS 143 1_555 E SG CYS 207 E CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf9 F SG CYS 101 F CYS 101 1_555 F SG CYS 164 F CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
disulf ? disulf10 F SG CYS 203 F CYS 203 1_555 F SG CYS 259 F CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf11 G SG CYS 26 G CYS 25 1_555 G SG CYS 81 G CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf12 I SG CYS 22 I CYS 23 1_555 I SG CYS 88 I CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf13 I SG CYS 133 I CYS 134 1_555 I SG CYS 183 I CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
disulf ? disulf14 I SG CYS 158 I CYS 159 1_555 J SG CYS 168 J CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
disulf ? disulf15 J SG CYS 22 J CYS 23 1_555 J SG CYS 90 J CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
disulf ? disulf16 J SG CYS 142 J CYS 143 1_555 J SG CYS 207 J CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 312 n n 
S O2 SO4 doub 313 n n 
S O3 SO4 sing 314 n n 
S O4 SO4 sing 315 n n 
#
_atom_sites.entry_id                     5NMF 
_atom_sites.fract_transf_matrix[1][1]    0.004817 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011805 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008919 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 7 EDO A 1 301 313 EDO EDO . 
L 8 GOL A 1 302 322 GOL GOL . 
M 9 SO4 A 1 303 337 SO4 SO4 . 
N 9 SO4 A 1 304 338 SO4 SO4 . 
O 9 SO4 A 1 305 341 SO4 SO4 . 
P 9 SO4 A 1 306 342 SO4 SO4 . 
Q 7 EDO D 1 301 308 EDO EDO . 
R 8 GOL D 1 302 321 GOL GOL . 
S 7 EDO E 1 301 306 EDO EDO . 
T 7 EDO E 1 302 316 EDO EDO . 
U 7 EDO E 1 303 318 EDO EDO . 
V 9 SO4 E 1 304 331 SO4 SO4 . 
W 9 SO4 E 1 305 333 SO4 SO4 . 
X 9 SO4 E 1 306 334 SO4 SO4 . 
Y 9 SO4 E 1 307 340 SO4 SO4 . 
Z 7 EDO F 1 301 301 EDO EDO . 
AA 7 EDO F 1 302 303 EDO EDO . 
BA 7 EDO F 1 303 312 EDO EDO . 
CA 7 EDO F 1 304 314 EDO EDO . 
DA 7 EDO F 1 305 317 EDO EDO . 
EA 7 EDO F 1 306 319 EDO EDO . 
FA 9 SO4 F 1 307 335 SO4 SO4 . 
GA 9 SO4 F 1 308 339 SO4 SO4 . 
HA 7 EDO I 1 301 302 EDO EDO . 
IA 7 EDO I 1 302 309 EDO EDO . 
JA 8 GOL I 1 303 323 GOL GOL . 
KA 7 EDO J 1 301 304 EDO EDO . 
LA 7 EDO J 1 302 305 EDO EDO . 
MA 7 EDO J 1 303 307 EDO EDO . 
NA 7 EDO J 1 304 310 EDO EDO . 
OA 7 EDO J 1 305 311 EDO EDO . 
PA 7 EDO J 1 306 315 EDO EDO . 
QA 9 SO4 J 1 307 332 SO4 SO4 . 
RA 9 SO4 J 1 308 336 SO4 SO4 . 
SA 10 HOH A 1 401 460 HOH HOH . 
SA 10 HOH A 2 402 470 HOH HOH . 
SA 10 HOH A 3 403 429 HOH HOH . 
TA 10 HOH B 1 101 463 HOH HOH . 
TA 10 HOH B 2 102 459 HOH HOH . 
TA 10 HOH B 3 103 407 HOH HOH . 
UA 10 HOH D 1 401 439 HOH HOH . 
UA 10 HOH D 2 402 431 HOH HOH . 
UA 10 HOH D 3 403 445 HOH HOH . 
UA 10 HOH D 4 404 444 HOH HOH . 
UA 10 HOH D 5 405 441 HOH HOH . 
UA 10 HOH D 6 406 458 HOH HOH . 
UA 10 HOH D 7 407 453 HOH HOH . 
UA 10 HOH D 8 408 443 HOH HOH . 
UA 10 HOH D 9 409 405 HOH HOH . 
VA 10 HOH E 1 401 462 HOH HOH . 
VA 10 HOH E 2 402 421 HOH HOH . 
VA 10 HOH E 3 403 469 HOH HOH . 
VA 10 HOH E 4 404 451 HOH HOH . 
VA 10 HOH E 5 405 447 HOH HOH . 
VA 10 HOH E 6 406 440 HOH HOH . 
VA 10 HOH E 7 407 404 HOH HOH . 
WA 10 HOH F 1 401 416 HOH HOH . 
WA 10 HOH F 2 402 449 HOH HOH . 
WA 10 HOH F 3 403 474 HOH HOH . 
WA 10 HOH F 4 404 413 HOH HOH . 
WA 10 HOH F 5 405 414 HOH HOH . 
WA 10 HOH F 6 406 426 HOH HOH . 
WA 10 HOH F 7 407 406 HOH HOH . 
WA 10 HOH F 8 408 410 HOH HOH . 
WA 10 HOH F 9 409 475 HOH HOH . 
WA 10 HOH F 10 410 465 HOH HOH . 
WA 10 HOH F 11 411 409 HOH HOH . 
WA 10 HOH F 12 412 472 HOH HOH . 
WA 10 HOH F 13 413 455 HOH HOH . 
WA 10 HOH F 14 414 461 HOH HOH . 
WA 10 HOH F 15 415 435 HOH HOH . 
WA 10 HOH F 16 416 450 HOH HOH . 
WA 10 HOH F 17 417 433 HOH HOH . 
WA 10 HOH F 18 418 424 HOH HOH . 
WA 10 HOH F 19 419 430 HOH HOH . 
XA 10 HOH G 1 101 473 HOH HOH . 
XA 10 HOH G 2 102 467 HOH HOH . 
XA 10 HOH G 3 103 403 HOH HOH . 
XA 10 HOH G 4 104 428 HOH HOH . 
XA 10 HOH G 5 105 446 HOH HOH . 
YA 10 HOH H 1 101 432 HOH HOH . 
ZA 10 HOH I 1 401 477 HOH HOH . 
ZA 10 HOH I 2 402 425 HOH HOH . 
ZA 10 HOH I 3 403 454 HOH HOH . 
ZA 10 HOH I 4 404 468 HOH HOH . 
ZA 10 HOH I 5 405 471 HOH HOH . 
ZA 10 HOH I 6 406 417 HOH HOH . 
ZA 10 HOH I 7 407 427 HOH HOH . 
ZA 10 HOH I 8 408 464 HOH HOH . 
ZA 10 HOH I 9 409 452 HOH HOH . 
ZA 10 HOH I 10 410 442 HOH HOH . 
AB 10 HOH J 1 401 456 HOH HOH . 
AB 10 HOH J 2 402 411 HOH HOH . 
AB 10 HOH J 3 403 412 HOH HOH . 
AB 10 HOH J 4 404 457 HOH HOH . 
AB 10 HOH J 5 405 420 HOH HOH . 
AB 10 HOH J 6 406 466 HOH HOH . 
AB 10 HOH J 7 407 423 HOH HOH . 
AB 10 HOH J 8 408 436 HOH HOH . 
AB 10 HOH J 9 409 438 HOH HOH . 
AB 10 HOH J 10 410 422 HOH HOH . 
AB 10 HOH J 11 411 419 HOH HOH . 
AB 10 HOH J 12 412 434 HOH HOH . 
AB 10 HOH J 13 413 415 HOH HOH . 
AB 10 HOH J 14 414 448 HOH HOH . 
AB 10 HOH J 15 415 418 HOH HOH . 
AB 10 HOH J 16 416 408 HOH HOH . 
AB 10 HOH J 17 417 476 HOH HOH . 
AB 10 HOH J 18 418 437 HOH HOH . 
AB 10 HOH J 19 419 402 HOH HOH . 
AB 10 HOH J 20 420 401 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . QA 9 43.699 87.483 95.156 1 92.39 ? S SO4 307 J 1 
HETATM 2 O O1 SO4 . . . QA 9 44.838 87.739 94.237 1 87.34 ? O1 SO4 307 J 1 
HETATM 3 O O2 SO4 . . . QA 9 42.453 87.316 94.367 1 93.42 ? O2 SO4 307 J 1 
HETATM 4 O O3 SO4 . . . QA 9 43.976 86.242 95.916 1 88.22 ? O3 SO4 307 J 1 
HETATM 5 O O4 SO4 . . . QA 9 43.505 88.617 96.103 1 88.44 ? O4 SO4 307 J 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           225 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           5 
#