data_5NMI # _model_server_result.job_id cBxq4SC_RDOk-LWOlrePqQ _model_server_result.datetime_utc '2025-07-12 18:58:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nmi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"QA","auth_seq_id":202}' # _entry.id 5NMI # _exptl.entry_id 5NMI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 744.034 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5NMI _cell.length_a 129.477 _cell.length_b 129.477 _cell.length_c 720.294 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 Z N N ? 13 DA N N ? 13 GA N N ? 13 LA N N ? 13 PA N N ? 13 QA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 222 E CYS 144 1_555 E SG CYS 238 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 H SG CYS 37 H CYS 24 1_555 H SG CYS 81 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 H SG CYS 53 H CYS 40 1_555 H SG CYS 67 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 S SG CYS 37 U CYS 24 1_555 S SG CYS 81 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 S SG CYS 53 U CYS 40 1_555 S SG CYS 67 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 D SG CYS 36 D CYS 37 1_555 CA CAB HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.624 ? covale ? covale2 D SG CYS 39 D CYS 40 1_555 CA CAC HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.665 ? covale ? covale3 O SG CYS 36 Q CYS 37 1_555 OA CAB HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.626 ? covale ? covale4 O SG CYS 39 Q CYS 40 1_555 OA CAC HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.678 ? metalc ? metalc1 C NE2 HIS 76 C HIS 83 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc2 C NE2 HIS 90 C HIS 97 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc3 C NE2 HIS 175 C HIS 182 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 ? metalc ? metalc4 C NE2 HIS 189 C HIS 196 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 CA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? metalc ? metalc6 D SD MET 159 D MET 160 1_555 CA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc7 E SG CYS 217 E CYS 139 1_555 FA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc8 E ND1 HIS 219 E HIS 141 1_555 FA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc9 E SG CYS 236 E CYS 158 1_555 FA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc10 E ND1 HIS 239 E HIS 161 1_555 FA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? metalc ? metalc11 N NE2 HIS 76 P HIS 83 1_555 IA FE HEM . P HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? metalc ? metalc12 N NE2 HIS 90 P HIS 97 1_555 JA FE HEM . P HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc13 N NE2 HIS 175 P HIS 182 1_555 IA FE HEM . P HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? metalc ? metalc14 N NE2 HIS 189 P HIS 196 1_555 JA FE HEM . P HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? metalc ? metalc15 O NE2 HIS 40 Q HIS 41 1_555 OA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? metalc ? metalc16 O SD MET 159 Q MET 160 1_555 OA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C5 PEE sing 709 n n C5 C4 PEE sing 710 n n C4 O4P PEE sing 711 n n O4P P PEE sing 712 n n O1P P PEE doub 713 n n C1 O3P PEE sing 714 n n C1 C2 PEE sing 715 n n O3P P PEE sing 716 n n P O2P PEE sing 717 n n C2 C3 PEE sing 718 n n C2 O2 PEE sing 719 n n C3 O3 PEE sing 720 n n O2 C10 PEE sing 721 n n C31 C30 PEE sing 722 n n C31 C32 PEE sing 723 n n C33 C32 PEE sing 724 n n C33 C34 PEE sing 725 n n C30 O3 PEE sing 726 n n C30 O5 PEE doub 727 n n C10 O4 PEE doub 728 n n C10 C11 PEE sing 729 n n C34 C35 PEE sing 730 n n C11 C12 PEE sing 731 n n C35 C36 PEE sing 732 n n C36 C37 PEE sing 733 n n C37 C38 PEE sing 734 n n C38 C39 PEE doub 735 z n C12 C13 PEE sing 736 n n C39 C40 PEE sing 737 n n C13 C14 PEE sing 738 n n C14 C15 PEE sing 739 n n C40 C41 PEE sing 740 n n C15 C16 PEE sing 741 n n C41 C42 PEE sing 742 n n C16 C17 PEE sing 743 n n C42 C43 PEE sing 744 n n C17 C18 PEE sing 745 n n C43 C44 PEE sing 746 n n C18 C19 PEE doub 747 z n C46 C47 PEE sing 748 n n C46 C45 PEE sing 749 n n C44 C45 PEE sing 750 n n C19 C20 PEE sing 751 n n C20 C21 PEE sing 752 n n C21 C22 PEE sing 753 n n C22 C23 PEE sing 754 n n C23 C24 PEE sing 755 n n C24 C25 PEE sing 756 n n C26 C25 PEE sing 757 n n C26 C27 PEE sing 758 n n C27 H7 PEE sing 759 n n C27 H8 PEE sing 760 n n C27 H82 PEE sing 761 n n C26 H5 PEE sing 762 n n C26 H6 PEE sing 763 n n C25 H12 PEE sing 764 n n C25 H4 PEE sing 765 n n C24 H10 PEE sing 766 n n C24 H11 PEE sing 767 n n C23 H83 PEE sing 768 n n C23 H9 PEE sing 769 n n C22 H2 PEE sing 770 n n C22 H3 PEE sing 771 n n C21 H14 PEE sing 772 n n C21 H1 PEE sing 773 n n C20 H16 PEE sing 774 n n C20 H13 PEE sing 775 n n C19 H18 PEE sing 776 n n C18 H20 PEE sing 777 n n C17 H22 PEE sing 778 n n C17 H19 PEE sing 779 n n C16 H21 PEE sing 780 n n C16 H28 PEE sing 781 n n C15 H23 PEE sing 782 n n C15 H24 PEE sing 783 n n C14 H25 PEE sing 784 n n C14 H26 PEE sing 785 n n C13 H17 PEE sing 786 n n C13 H27 PEE sing 787 n n C12 H15 PEE sing 788 n n C12 H29 PEE sing 789 n n C11 H30 PEE sing 790 n n C11 H31 PEE sing 791 n n C2 H32 PEE sing 792 n n C1 H33 PEE sing 793 n n C1 H34 PEE sing 794 n n O2P H35 PEE sing 795 n n C4 H36 PEE sing 796 n n C4 H37 PEE sing 797 n n C5 H38 PEE sing 798 n n C5 H39 PEE sing 799 n n N H40 PEE sing 800 n n N H41 PEE sing 801 n n C3 H43 PEE sing 802 n n C3 H44 PEE sing 803 n n C31 H45 PEE sing 804 n n C31 H46 PEE sing 805 n n C32 H47 PEE sing 806 n n C32 H48 PEE sing 807 n n C33 H49 PEE sing 808 n n C33 H50 PEE sing 809 n n C34 H51 PEE sing 810 n n C34 H52 PEE sing 811 n n C35 H53 PEE sing 812 n n C35 H54 PEE sing 813 n n C36 H55 PEE sing 814 n n C36 H56 PEE sing 815 n n C37 H57 PEE sing 816 n n C37 H58 PEE sing 817 n n C38 H59 PEE sing 818 n n C39 H60 PEE sing 819 n n C40 H81 PEE sing 820 n n C40 H61 PEE sing 821 n n C41 H80 PEE sing 822 n n C41 H62 PEE sing 823 n n C42 H63 PEE sing 824 n n C42 H64 PEE sing 825 n n C43 H65 PEE sing 826 n n C43 H66 PEE sing 827 n n C44 H67 PEE sing 828 n n C44 H68 PEE sing 829 n n C45 H69 PEE sing 830 n n C45 H70 PEE sing 831 n n C46 H71 PEE sing 832 n n C46 H72 PEE sing 833 n n C47 H73 PEE sing 834 n n C47 H74 PEE sing 835 n n C47 H75 PEE sing 836 n n # _atom_sites.entry_id 5NMI _atom_sites.fract_transf_matrix[1][1] 0.007723 _atom_sites.fract_transf_matrix[1][2] 0.004459 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008918 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001388 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 11 HEM C 1 501 501 HEM HEM . X 11 HEM C 1 502 502 HEM HEM . Y 12 MJM C 1 503 503 MJM MJM . Z 13 PEE C 1 504 504 PEE PEE . AA 14 CDL C 1 505 505 CDL CDL . BA 14 CDL C 1 506 501 CDL CDL . CA 15 HEC D 1 501 501 HEC HEC . DA 13 PEE D 1 502 502 PEE PEE . EA 14 CDL D 1 503 503 CDL CDL . FA 16 FES E 1 501 501 FES FES . GA 13 PEE E 1 502 502 PEE PEE . HA 14 CDL P 1 401 503 CDL CDL . IA 11 HEM P 1 402 501 HEM HEM . JA 11 HEM P 1 403 502 HEM HEM . KA 12 MJM P 1 404 503 MJM MJM . LA 13 PEE P 1 405 504 PEE PEE . MA 14 CDL P 1 406 505 CDL CDL . NA 14 CDL P 1 407 501 CDL CDL . OA 15 HEC Q 1 501 501 HEC HEC . PA 13 PEE R 1 201 502 PEE PEE . QA 13 PEE R 1 202 502 PEE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 PEE . . . QA 13 17.459 47.504 -12.812 1 51.39 ? C12 PEE 202 R 1 HETATM 2 C C11 PEE . . . QA 13 17.392 46.847 -11.443 1 52.05 ? C11 PEE 202 R 1 HETATM 3 C C10 PEE . . . QA 13 17.452 47.882 -10.345 1 52.93 ? C10 PEE 202 R 1 HETATM 4 O O4 PEE . . . QA 13 18.14 48.894 -10.423 1 55.38 ? O4 PEE 202 R 1 HETATM 5 O O2 PEE . . . QA 13 16.678 47.632 -9.147 1 48.03 ? O2 PEE 202 R 1 HETATM 6 C C2 PEE . . . QA 13 16.039 48.78 -8.586 1 44.39 ? C2 PEE 202 R 1 HETATM 7 C C1 PEE . . . QA 13 16.96 49.398 -7.54 1 41.74 ? C1 PEE 202 R 1 HETATM 8 O O3P PEE . . . QA 13 16.264 50.225 -6.617 1 38.55 ? O3P PEE 202 R 1 HETATM 9 P P PEE . . . QA 13 16.615 51.794 -6.616 1 34.24 ? P PEE 202 R 1 HETATM 10 O O2P PEE . . . QA 13 15.897 52.416 -7.795 1 31.42 ? O2P PEE 202 R 1 HETATM 11 O O1P PEE . . . QA 13 18.093 52.007 -6.413 1 36.68 ? O1P PEE 202 R 1 HETATM 12 O O4P PEE . . . QA 13 15.917 52.207 -5.244 1 36.9 ? O4P PEE 202 R 1 HETATM 13 C C4 PEE . . . QA 13 14.504 52.366 -5.231 1 37.2 ? C4 PEE 202 R 1 HETATM 14 C C5 PEE . . . QA 13 13.976 52.004 -3.851 1 36.49 ? C5 PEE 202 R 1 HETATM 15 N N PEE . . . QA 13 13.223 53.155 -3.264 1 34.33 ? N PEE 202 R 1 HETATM 16 C C3 PEE . . . QA 13 14.747 48.26 -8 1 43.3 ? C3 PEE 202 R 1 HETATM 17 O O3 PEE . . . QA 13 15.132 47.241 -7.086 1 40.48 ? O3 PEE 202 R 1 HETATM 18 C C30 PEE . . . QA 13 14.308 47.078 -5.918 1 38.4 ? C30 PEE 202 R 1 HETATM 19 O O5 PEE . . . QA 13 14.431 47.885 -5.012 1 39.82 ? O5 PEE 202 R 1 HETATM 20 C C31 PEE . . . QA 13 13.303 45.953 -5.867 1 33.6 ? C31 PEE 202 R 1 HETATM 21 C C32 PEE . . . QA 13 12.516 45.963 -7.169 1 30.14 ? C32 PEE 202 R 1 HETATM 22 C C33 PEE . . . QA 13 11.485 44.844 -7.211 1 28.24 ? C33 PEE 202 R 1 HETATM 23 C C34 PEE . . . QA 13 11.527 44.106 -8.547 1 26.96 ? C34 PEE 202 R 1 HETATM 24 C C35 PEE . . . QA 13 10.385 43.097 -8.655 1 26.45 ? C35 PEE 202 R 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #