data_5NN2 # _model_server_result.job_id G8E8Xh3CMQgR41I-vFkhpw _model_server_result.datetime_utc '2024-12-21 15:56:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nn2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5NN2 # _exptl.entry_id 5NN2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 243.207 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3~{R},5~{R})-1-[2,4-bis(fluoranyl)phenyl]-5-oxidanyl-pyrrolidine-3-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.72 _cell.angle_gamma 90 _cell.entry_id 5NN2 _cell.length_a 33.36 _cell.length_b 93.38 _cell.length_c 35.9 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NN2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H11 F2 N O3' _chem_comp.formula_weight 243.207 _chem_comp.id Z24 _chem_comp.mon_nstd_flag . _chem_comp.name '(3~{R},5~{R})-1-[2,4-bis(fluoranyl)phenyl]-5-oxidanyl-pyrrolidine-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAC CAK Z24 doub 376 n n FAE CAN Z24 sing 377 n n CAK OAA Z24 sing 378 n n CAK CAP Z24 sing 379 n n CAJ CAP Z24 sing 380 n n CAJ NAQ Z24 sing 381 n n CAN CAH Z24 doub 382 n y CAN CAO Z24 sing 383 n y CAH CAM Z24 sing 384 n y CAP CAI Z24 sing 385 n n NAQ CAO Z24 sing 386 n n NAQ CAL Z24 sing 387 n n CAO CAG Z24 doub 388 n y CAM FAD Z24 sing 389 n n CAM CAF Z24 doub 390 n y CAI CAL Z24 sing 391 n n CAL OAB Z24 sing 392 n n CAG CAF Z24 sing 393 n y OAB HAB1 Z24 sing 394 n n CAL HAL1 Z24 sing 395 n n CAI HAI1 Z24 sing 396 n n CAI HAI2 Z24 sing 397 n n CAP HAP1 Z24 sing 398 n n OAA H1 Z24 sing 399 n n CAJ HAJ2 Z24 sing 400 n n CAJ HAJ1 Z24 sing 401 n n CAH HAH1 Z24 sing 402 n n CAF HAF1 Z24 sing 403 n n CAG HAG1 Z24 sing 404 n n # _atom_sites.entry_id 5NN2 _atom_sites.fract_transf_matrix[1][1] 0.029976 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005675 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Z24 A 1 601 1 Z24 DRG . C 3 HOH A 1 701 73 HOH HOH . C 3 HOH A 2 702 64 HOH HOH . C 3 HOH A 3 703 8 HOH HOH . C 3 HOH A 4 704 31 HOH HOH . C 3 HOH A 5 705 79 HOH HOH . C 3 HOH A 6 706 22 HOH HOH . C 3 HOH A 7 707 32 HOH HOH . C 3 HOH A 8 708 62 HOH HOH . C 3 HOH A 9 709 48 HOH HOH . C 3 HOH A 10 710 7 HOH HOH . C 3 HOH A 11 711 82 HOH HOH . C 3 HOH A 12 712 1 HOH HOH . C 3 HOH A 13 713 14 HOH HOH . C 3 HOH A 14 714 67 HOH HOH . C 3 HOH A 15 715 28 HOH HOH . C 3 HOH A 16 716 13 HOH HOH . C 3 HOH A 17 717 11 HOH HOH . C 3 HOH A 18 718 4 HOH HOH . C 3 HOH A 19 719 9 HOH HOH . C 3 HOH A 20 720 18 HOH HOH . C 3 HOH A 21 721 54 HOH HOH . C 3 HOH A 22 722 66 HOH HOH . C 3 HOH A 23 723 60 HOH HOH . C 3 HOH A 24 724 2 HOH HOH . C 3 HOH A 25 725 10 HOH HOH . C 3 HOH A 26 726 24 HOH HOH . C 3 HOH A 27 727 5 HOH HOH . C 3 HOH A 28 728 56 HOH HOH . C 3 HOH A 29 729 15 HOH HOH . C 3 HOH A 30 730 20 HOH HOH . C 3 HOH A 31 731 80 HOH HOH . C 3 HOH A 32 732 52 HOH HOH . C 3 HOH A 33 733 68 HOH HOH . C 3 HOH A 34 734 30 HOH HOH . C 3 HOH A 35 735 61 HOH HOH . C 3 HOH A 36 736 12 HOH HOH . C 3 HOH A 37 737 3 HOH HOH . C 3 HOH A 38 738 6 HOH HOH . C 3 HOH A 39 739 33 HOH HOH . C 3 HOH A 40 740 46 HOH HOH . C 3 HOH A 41 741 36 HOH HOH . C 3 HOH A 42 742 40 HOH HOH . C 3 HOH A 43 743 69 HOH HOH . C 3 HOH A 44 744 75 HOH HOH . C 3 HOH A 45 745 70 HOH HOH . C 3 HOH A 46 746 23 HOH HOH . C 3 HOH A 47 747 39 HOH HOH . C 3 HOH A 48 748 34 HOH HOH . C 3 HOH A 49 749 16 HOH HOH . C 3 HOH A 50 750 45 HOH HOH . C 3 HOH A 51 751 47 HOH HOH . C 3 HOH A 52 752 17 HOH HOH . C 3 HOH A 53 753 42 HOH HOH . C 3 HOH A 54 754 81 HOH HOH . C 3 HOH A 55 755 38 HOH HOH . C 3 HOH A 56 756 21 HOH HOH . C 3 HOH A 57 757 37 HOH HOH . C 3 HOH A 58 758 35 HOH HOH . C 3 HOH A 59 759 49 HOH HOH . C 3 HOH A 60 760 76 HOH HOH . C 3 HOH A 61 761 55 HOH HOH . C 3 HOH A 62 762 51 HOH HOH . C 3 HOH A 63 763 59 HOH HOH . C 3 HOH A 64 764 72 HOH HOH . C 3 HOH A 65 765 78 HOH HOH . C 3 HOH A 66 766 43 HOH HOH . C 3 HOH A 67 767 53 HOH HOH . C 3 HOH A 68 768 29 HOH HOH . C 3 HOH A 69 769 41 HOH HOH . C 3 HOH A 70 770 71 HOH HOH . C 3 HOH A 71 771 26 HOH HOH . C 3 HOH A 72 772 74 HOH HOH . C 3 HOH A 73 773 19 HOH HOH . C 3 HOH A 74 774 65 HOH HOH . C 3 HOH A 75 775 25 HOH HOH . C 3 HOH A 76 776 77 HOH HOH . C 3 HOH A 77 777 27 HOH HOH . C 3 HOH A 78 778 63 HOH HOH . C 3 HOH A 79 779 44 HOH HOH . C 3 HOH A 80 780 58 HOH HOH . C 3 HOH A 81 781 57 HOH HOH . C 3 HOH A 82 782 50 HOH HOH . C 3 HOH A 83 783 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAB Z24 . . . B 2 59.041 28.468 79.253 1 82.61 ? OAB Z24 601 A 1 HETATM 2 C CAL Z24 . . . B 2 58.983 28.832 77.935 1 81.38 ? CAL Z24 601 A 1 HETATM 3 C CAI Z24 . . . B 2 57.939 29.846 77.725 1 80.85 ? CAI Z24 601 A 1 HETATM 4 C CAP Z24 . . . B 2 57.386 29.55 76.382 1 82.81 ? CAP Z24 601 A 1 HETATM 5 C CAK Z24 . . . B 2 57.486 30.719 75.481 1 90.58 ? CAK Z24 601 A 1 HETATM 6 O OAC Z24 . . . B 2 57.699 30.546 74.251 1 85.21 ? OAC Z24 601 A 1 HETATM 7 O OAA Z24 . . . B 2 57.352 31.882 75.942 1 96.95 ? OAA Z24 601 A 1 HETATM 8 C CAJ Z24 . . . B 2 58.234 28.436 75.881 1 76.14 ? CAJ Z24 601 A 1 HETATM 9 N NAQ Z24 . . . B 2 58.61 27.732 77.082 1 77.61 ? NAQ Z24 601 A 1 HETATM 10 C CAO Z24 . . . B 2 59.006 26.334 77.147 1 74.31 ? CAO Z24 601 A 1 HETATM 11 C CAN Z24 . . . B 2 59.878 25.813 76.196 1 71.46 ? CAN Z24 601 A 1 HETATM 12 F FAE Z24 . . . B 2 60.348 26.584 75.224 1 77.88 ? FAE Z24 601 A 1 HETATM 13 C CAH Z24 . . . B 2 60.266 24.475 76.248 1 62.37 ? CAH Z24 601 A 1 HETATM 14 C CAM Z24 . . . B 2 59.781 23.646 77.252 1 66.24 ? CAM Z24 601 A 1 HETATM 15 F FAD Z24 . . . B 2 60.145 22.362 77.312 1 63.53 ? FAD Z24 601 A 1 HETATM 16 C CAF Z24 . . . B 2 58.907 24.157 78.201 1 64.27 ? CAF Z24 601 A 1 HETATM 17 C CAG Z24 . . . B 2 58.518 25.495 78.15 1 75.42 ? CAG Z24 601 A 1 HETATM 18 H HAB1 Z24 . . . B 2 59.424 29.115 79.722 1 99.13 ? HAB1 Z24 601 A 1 HETATM 19 H HAL1 Z24 . . . B 2 59.844 29.185 77.655 1 97.66 ? HAL1 Z24 601 A 1 HETATM 20 H HAI1 Z24 . . . B 2 57.243 29.763 78.404 1 97.02 ? HAI1 Z24 601 A 1 HETATM 21 H HAI2 Z24 . . . B 2 58.327 30.741 77.742 1 97.02 ? HAI2 Z24 601 A 1 HETATM 22 H HAP1 Z24 . . . B 2 56.465 29.261 76.456 1 99.37 ? HAP1 Z24 601 A 1 HETATM 23 H HAJ2 Z24 . . . B 2 59.023 28.777 75.417 1 91.37 ? HAJ2 Z24 601 A 1 HETATM 24 H HAJ1 Z24 . . . B 2 57.716 27.856 75.296 1 91.37 ? HAJ1 Z24 601 A 1 HETATM 25 H HAH1 Z24 . . . B 2 60.876 24.12 75.577 1 74.84 ? HAH1 Z24 601 A 1 HETATM 26 H HAF1 Z24 . . . B 2 58.569 23.58 78.907 1 77.13 ? HAF1 Z24 601 A 1 HETATM 27 H HAG1 Z24 . . . B 2 57.909 25.848 78.824 1 90.5 ? HAG1 Z24 601 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #