data_5NNE
#
_model_server_result.job_id            nLNbD03IT5NHP3tfOSx9fg 
_model_server_result.datetime_utc      '2024-11-22 00:32:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nne 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    5NNE 
#
_exptl.entry_id    5NNE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NNE 
_cell.length_a            41.347 
_cell.length_b            53.032 
_cell.length_c            58.193 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NNE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ALA 3 C ALA 1200 1_555 B N ALY 4 C ALY 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 B C ALY 4 C ALY 1201 1_555 B N GLY 5 C GLY 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale3 B C LYS 6 C LYS 1203 1_555 B N ALY 7 C ALY 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale4 B C ALY 7 C ALY 1204 1_555 B N THR 8 C THR 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 111 n n 
C1 C2 EDO sing 112 n n 
C1 H11 EDO sing 113 n n 
C1 H12 EDO sing 114 n n 
O1 HO1 EDO sing 115 n n 
C2 O2 EDO sing 116 n n 
C2 H21 EDO sing 117 n n 
C2 H22 EDO sing 118 n n 
O2 HO2 EDO sing 119 n n 
#
_atom_sites.entry_id                     5NNE 
_atom_sites.fract_transf_matrix[1][1]    0.024186 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018857 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017184 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO A 1 201 1 EDO EDO . 
D 4 HOH A 1 301 198 HOH HOH . 
D 4 HOH A 2 302 55 HOH HOH . 
D 4 HOH A 3 303 84 HOH HOH . 
D 4 HOH A 4 304 158 HOH HOH . 
D 4 HOH A 5 305 70 HOH HOH . 
D 4 HOH A 6 306 172 HOH HOH . 
D 4 HOH A 7 307 3 HOH HOH . 
D 4 HOH A 8 308 58 HOH HOH . 
D 4 HOH A 9 309 186 HOH HOH . 
D 4 HOH A 10 310 25 HOH HOH . 
D 4 HOH A 11 311 169 HOH HOH . 
D 4 HOH A 12 312 22 HOH HOH . 
D 4 HOH A 13 313 147 HOH HOH . 
D 4 HOH A 14 314 203 HOH HOH . 
D 4 HOH A 15 315 123 HOH HOH . 
D 4 HOH A 16 316 39 HOH HOH . 
D 4 HOH A 17 317 83 HOH HOH . 
D 4 HOH A 18 318 18 HOH HOH . 
D 4 HOH A 19 319 44 HOH HOH . 
D 4 HOH A 20 320 185 HOH HOH . 
D 4 HOH A 21 321 63 HOH HOH . 
D 4 HOH A 22 322 6 HOH HOH . 
D 4 HOH A 23 323 106 HOH HOH . 
D 4 HOH A 24 324 15 HOH HOH . 
D 4 HOH A 25 325 31 HOH HOH . 
D 4 HOH A 26 326 166 HOH HOH . 
D 4 HOH A 27 327 53 HOH HOH . 
D 4 HOH A 28 328 113 HOH HOH . 
D 4 HOH A 29 329 152 HOH HOH . 
D 4 HOH A 30 330 20 HOH HOH . 
D 4 HOH A 31 331 101 HOH HOH . 
D 4 HOH A 32 332 43 HOH HOH . 
D 4 HOH A 33 333 210 HOH HOH . 
D 4 HOH A 34 334 4 HOH HOH . 
D 4 HOH A 35 335 128 HOH HOH . 
D 4 HOH A 36 336 8 HOH HOH . 
D 4 HOH A 37 337 17 HOH HOH . 
D 4 HOH A 38 338 7 HOH HOH . 
D 4 HOH A 39 339 146 HOH HOH . 
D 4 HOH A 40 340 50 HOH HOH . 
D 4 HOH A 41 341 54 HOH HOH . 
D 4 HOH A 42 342 47 HOH HOH . 
D 4 HOH A 43 343 5 HOH HOH . 
D 4 HOH A 44 344 11 HOH HOH . 
D 4 HOH A 45 345 74 HOH HOH . 
D 4 HOH A 46 346 218 HOH HOH . 
D 4 HOH A 47 347 19 HOH HOH . 
D 4 HOH A 48 348 46 HOH HOH . 
D 4 HOH A 49 349 16 HOH HOH . 
D 4 HOH A 50 350 213 HOH HOH . 
D 4 HOH A 51 351 23 HOH HOH . 
D 4 HOH A 52 352 82 HOH HOH . 
D 4 HOH A 53 353 122 HOH HOH . 
D 4 HOH A 54 354 48 HOH HOH . 
D 4 HOH A 55 355 14 HOH HOH . 
D 4 HOH A 56 356 183 HOH HOH . 
D 4 HOH A 57 357 163 HOH HOH . 
D 4 HOH A 58 358 138 HOH HOH . 
D 4 HOH A 59 359 33 HOH HOH . 
D 4 HOH A 60 360 52 HOH HOH . 
D 4 HOH A 61 361 168 HOH HOH . 
D 4 HOH A 62 362 95 HOH HOH . 
D 4 HOH A 63 363 71 HOH HOH . 
D 4 HOH A 64 364 10 HOH HOH . 
D 4 HOH A 65 365 29 HOH HOH . 
D 4 HOH A 66 366 173 HOH HOH . 
D 4 HOH A 67 367 62 HOH HOH . 
D 4 HOH A 68 368 94 HOH HOH . 
D 4 HOH A 69 369 184 HOH HOH . 
D 4 HOH A 70 370 200 HOH HOH . 
D 4 HOH A 71 371 12 HOH HOH . 
D 4 HOH A 72 372 98 HOH HOH . 
D 4 HOH A 73 373 165 HOH HOH . 
D 4 HOH A 74 374 61 HOH HOH . 
D 4 HOH A 75 375 73 HOH HOH . 
D 4 HOH A 76 376 40 HOH HOH . 
D 4 HOH A 77 377 149 HOH HOH . 
D 4 HOH A 78 378 206 HOH HOH . 
D 4 HOH A 79 379 21 HOH HOH . 
D 4 HOH A 80 380 49 HOH HOH . 
D 4 HOH A 81 381 75 HOH HOH . 
D 4 HOH A 82 382 67 HOH HOH . 
D 4 HOH A 83 383 59 HOH HOH . 
D 4 HOH A 84 384 124 HOH HOH . 
D 4 HOH A 85 385 2 HOH HOH . 
D 4 HOH A 86 386 51 HOH HOH . 
D 4 HOH A 87 387 24 HOH HOH . 
D 4 HOH A 88 388 45 HOH HOH . 
D 4 HOH A 89 389 69 HOH HOH . 
D 4 HOH A 90 390 41 HOH HOH . 
D 4 HOH A 91 391 145 HOH HOH . 
D 4 HOH A 92 392 127 HOH HOH . 
D 4 HOH A 93 393 212 HOH HOH . 
D 4 HOH A 94 394 154 HOH HOH . 
D 4 HOH A 95 395 164 HOH HOH . 
D 4 HOH A 96 396 37 HOH HOH . 
D 4 HOH A 97 397 171 HOH HOH . 
D 4 HOH A 98 398 136 HOH HOH . 
D 4 HOH A 99 399 156 HOH HOH . 
D 4 HOH A 100 400 81 HOH HOH . 
D 4 HOH A 101 401 64 HOH HOH . 
D 4 HOH A 102 402 155 HOH HOH . 
D 4 HOH A 103 403 211 HOH HOH . 
D 4 HOH A 104 404 214 HOH HOH . 
D 4 HOH A 105 405 111 HOH HOH . 
D 4 HOH A 106 406 182 HOH HOH . 
D 4 HOH A 107 407 205 HOH HOH . 
D 4 HOH A 108 408 89 HOH HOH . 
D 4 HOH A 109 409 219 HOH HOH . 
D 4 HOH A 110 410 88 HOH HOH . 
D 4 HOH A 111 411 215 HOH HOH . 
D 4 HOH A 112 412 175 HOH HOH . 
D 4 HOH A 113 413 99 HOH HOH . 
D 4 HOH A 114 414 201 HOH HOH . 
D 4 HOH A 115 415 179 HOH HOH . 
D 4 HOH A 116 416 197 HOH HOH . 
D 4 HOH A 117 417 162 HOH HOH . 
D 4 HOH A 118 418 100 HOH HOH . 
D 4 HOH A 119 419 170 HOH HOH . 
D 4 HOH A 120 420 220 HOH HOH . 
D 4 HOH A 121 421 104 HOH HOH . 
D 4 HOH A 122 422 176 HOH HOH . 
D 4 HOH A 123 423 115 HOH HOH . 
D 4 HOH A 124 424 181 HOH HOH . 
D 4 HOH A 125 425 110 HOH HOH . 
D 4 HOH A 126 426 126 HOH HOH . 
D 4 HOH A 127 427 167 HOH HOH . 
D 4 HOH A 128 428 199 HOH HOH . 
D 4 HOH A 129 429 177 HOH HOH . 
E 4 HOH C 1 1301 180 HOH HOH . 
E 4 HOH C 2 1302 189 HOH HOH . 
E 4 HOH C 3 1303 28 HOH HOH . 
E 4 HOH C 4 1304 190 HOH HOH . 
E 4 HOH C 5 1305 161 HOH HOH . 
E 4 HOH C 6 1306 196 HOH HOH . 
E 4 HOH C 7 1307 202 HOH HOH . 
E 4 HOH C 8 1308 187 HOH HOH . 
E 4 HOH C 9 1309 195 HOH HOH . 
E 4 HOH C 10 1310 56 HOH HOH . 
E 4 HOH C 11 1311 216 HOH HOH . 
E 4 HOH C 12 1312 221 HOH HOH . 
E 4 HOH C 13 1313 188 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 58.038 8.863 -1.712 1 16.1 ? C1 EDO 201 A 1 
HETATM 2 O O1 EDO . . . C 3 58.059 7.605 -2.355 1 14.93 ? O1 EDO 201 A 1 
HETATM 3 C C2 EDO . . . C 3 57.543 9.909 -2.686 1 18.97 ? C2 EDO 201 A 1 
HETATM 4 O O2 EDO . . . C 3 58.458 10.076 -3.772 1 17.34 ? O2 EDO 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#