data_5NNG
#
_model_server_result.job_id            tiQpuFFr42JHl0zSdLow7A 
_model_server_result.datetime_utc      '2024-11-24 01:35:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nng 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    5NNG 
#
_exptl.entry_id    5NNG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NNG 
_cell.length_a            37.051 
_cell.length_b            44.141 
_cell.length_c            81.746 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NNG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C GLY 3 B GLY 584 1_555 B N ALY 4 B ALY 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 B C ALY 4 B ALY 585 1_555 B N TYR 5 B TYR 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale3 B C SER 6 B SER 587 1_555 B N ALY 7 B ALY 588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 B C ALY 7 B ALY 588 1_555 B N GLU 8 B GLU 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 111 n n 
C1 C2 EDO sing 112 n n 
C1 H11 EDO sing 113 n n 
C1 H12 EDO sing 114 n n 
O1 HO1 EDO sing 115 n n 
C2 O2 EDO sing 116 n n 
C2 H21 EDO sing 117 n n 
C2 H22 EDO sing 118 n n 
O2 HO2 EDO sing 119 n n 
#
_atom_sites.entry_id                     5NNG 
_atom_sites.fract_transf_matrix[1][1]    0.02699 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022655 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012233 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO A 1 201 1 EDO EDO . 
D 3 EDO A 1 202 2 EDO EDO . 
E 4 HOH A 1 301 187 HOH HOH . 
E 4 HOH A 2 302 217 HOH HOH . 
E 4 HOH A 3 303 218 HOH HOH . 
E 4 HOH A 4 304 219 HOH HOH . 
E 4 HOH A 5 305 174 HOH HOH . 
E 4 HOH A 6 306 237 HOH HOH . 
E 4 HOH A 7 307 70 HOH HOH . 
E 4 HOH A 8 308 206 HOH HOH . 
E 4 HOH A 9 309 126 HOH HOH . 
E 4 HOH A 10 310 235 HOH HOH . 
E 4 HOH A 11 311 241 HOH HOH . 
E 4 HOH A 12 312 1 HOH HOH . 
E 4 HOH A 13 313 34 HOH HOH . 
E 4 HOH A 14 314 150 HOH HOH . 
E 4 HOH A 15 315 44 HOH HOH . 
E 4 HOH A 16 316 196 HOH HOH . 
E 4 HOH A 17 317 245 HOH HOH . 
E 4 HOH A 18 318 68 HOH HOH . 
E 4 HOH A 19 319 179 HOH HOH . 
E 4 HOH A 20 320 8 HOH HOH . 
E 4 HOH A 21 321 254 HOH HOH . 
E 4 HOH A 22 322 36 HOH HOH . 
E 4 HOH A 23 323 181 HOH HOH . 
E 4 HOH A 24 324 157 HOH HOH . 
E 4 HOH A 25 325 191 HOH HOH . 
E 4 HOH A 26 326 89 HOH HOH . 
E 4 HOH A 27 327 26 HOH HOH . 
E 4 HOH A 28 328 221 HOH HOH . 
E 4 HOH A 29 329 49 HOH HOH . 
E 4 HOH A 30 330 123 HOH HOH . 
E 4 HOH A 31 331 29 HOH HOH . 
E 4 HOH A 32 332 155 HOH HOH . 
E 4 HOH A 33 333 54 HOH HOH . 
E 4 HOH A 34 334 30 HOH HOH . 
E 4 HOH A 35 335 61 HOH HOH . 
E 4 HOH A 36 336 180 HOH HOH . 
E 4 HOH A 37 337 129 HOH HOH . 
E 4 HOH A 38 338 23 HOH HOH . 
E 4 HOH A 39 339 146 HOH HOH . 
E 4 HOH A 40 340 88 HOH HOH . 
E 4 HOH A 41 341 72 HOH HOH . 
E 4 HOH A 42 342 15 HOH HOH . 
E 4 HOH A 43 343 20 HOH HOH . 
E 4 HOH A 44 344 57 HOH HOH . 
E 4 HOH A 45 345 92 HOH HOH . 
E 4 HOH A 46 346 98 HOH HOH . 
E 4 HOH A 47 347 18 HOH HOH . 
E 4 HOH A 48 348 2 HOH HOH . 
E 4 HOH A 49 349 16 HOH HOH . 
E 4 HOH A 50 350 67 HOH HOH . 
E 4 HOH A 51 351 59 HOH HOH . 
E 4 HOH A 52 352 7 HOH HOH . 
E 4 HOH A 53 353 121 HOH HOH . 
E 4 HOH A 54 354 258 HOH HOH . 
E 4 HOH A 55 355 3 HOH HOH . 
E 4 HOH A 56 356 171 HOH HOH . 
E 4 HOH A 57 357 161 HOH HOH . 
E 4 HOH A 58 358 50 HOH HOH . 
E 4 HOH A 59 359 6 HOH HOH . 
E 4 HOH A 60 360 41 HOH HOH . 
E 4 HOH A 61 361 248 HOH HOH . 
E 4 HOH A 62 362 73 HOH HOH . 
E 4 HOH A 63 363 45 HOH HOH . 
E 4 HOH A 64 364 132 HOH HOH . 
E 4 HOH A 65 365 53 HOH HOH . 
E 4 HOH A 66 366 133 HOH HOH . 
E 4 HOH A 67 367 42 HOH HOH . 
E 4 HOH A 68 368 80 HOH HOH . 
E 4 HOH A 69 369 232 HOH HOH . 
E 4 HOH A 70 370 35 HOH HOH . 
E 4 HOH A 71 371 93 HOH HOH . 
E 4 HOH A 72 372 37 HOH HOH . 
E 4 HOH A 73 373 27 HOH HOH . 
E 4 HOH A 74 374 130 HOH HOH . 
E 4 HOH A 75 375 227 HOH HOH . 
E 4 HOH A 76 376 48 HOH HOH . 
E 4 HOH A 77 377 166 HOH HOH . 
E 4 HOH A 78 378 100 HOH HOH . 
E 4 HOH A 79 379 12 HOH HOH . 
E 4 HOH A 80 380 33 HOH HOH . 
E 4 HOH A 81 381 31 HOH HOH . 
E 4 HOH A 82 382 17 HOH HOH . 
E 4 HOH A 83 383 28 HOH HOH . 
E 4 HOH A 84 384 253 HOH HOH . 
E 4 HOH A 85 385 9 HOH HOH . 
E 4 HOH A 86 386 52 HOH HOH . 
E 4 HOH A 87 387 64 HOH HOH . 
E 4 HOH A 88 388 91 HOH HOH . 
E 4 HOH A 89 389 43 HOH HOH . 
E 4 HOH A 90 390 144 HOH HOH . 
E 4 HOH A 91 391 40 HOH HOH . 
E 4 HOH A 92 392 69 HOH HOH . 
E 4 HOH A 93 393 124 HOH HOH . 
E 4 HOH A 94 394 169 HOH HOH . 
E 4 HOH A 95 395 87 HOH HOH . 
E 4 HOH A 96 396 242 HOH HOH . 
E 4 HOH A 97 397 60 HOH HOH . 
E 4 HOH A 98 398 51 HOH HOH . 
E 4 HOH A 99 399 226 HOH HOH . 
E 4 HOH A 100 400 222 HOH HOH . 
E 4 HOH A 101 401 76 HOH HOH . 
E 4 HOH A 102 402 176 HOH HOH . 
E 4 HOH A 103 403 55 HOH HOH . 
E 4 HOH A 104 404 95 HOH HOH . 
E 4 HOH A 105 405 255 HOH HOH . 
E 4 HOH A 106 406 118 HOH HOH . 
E 4 HOH A 107 407 58 HOH HOH . 
E 4 HOH A 108 408 247 HOH HOH . 
E 4 HOH A 109 409 94 HOH HOH . 
E 4 HOH A 110 410 163 HOH HOH . 
E 4 HOH A 111 411 135 HOH HOH . 
E 4 HOH A 112 412 160 HOH HOH . 
E 4 HOH A 113 413 4 HOH HOH . 
E 4 HOH A 114 414 46 HOH HOH . 
E 4 HOH A 115 415 74 HOH HOH . 
E 4 HOH A 116 416 82 HOH HOH . 
E 4 HOH A 117 417 19 HOH HOH . 
E 4 HOH A 118 418 119 HOH HOH . 
E 4 HOH A 119 419 21 HOH HOH . 
E 4 HOH A 120 420 32 HOH HOH . 
E 4 HOH A 121 421 210 HOH HOH . 
E 4 HOH A 122 422 11 HOH HOH . 
E 4 HOH A 123 423 25 HOH HOH . 
E 4 HOH A 124 424 192 HOH HOH . 
E 4 HOH A 125 425 14 HOH HOH . 
E 4 HOH A 126 426 246 HOH HOH . 
E 4 HOH A 127 427 13 HOH HOH . 
E 4 HOH A 128 428 83 HOH HOH . 
E 4 HOH A 129 429 63 HOH HOH . 
E 4 HOH A 130 430 142 HOH HOH . 
E 4 HOH A 131 431 39 HOH HOH . 
E 4 HOH A 132 432 198 HOH HOH . 
E 4 HOH A 133 433 134 HOH HOH . 
E 4 HOH A 134 434 79 HOH HOH . 
E 4 HOH A 135 435 172 HOH HOH . 
E 4 HOH A 136 436 229 HOH HOH . 
E 4 HOH A 137 437 153 HOH HOH . 
E 4 HOH A 138 438 236 HOH HOH . 
E 4 HOH A 139 439 256 HOH HOH . 
E 4 HOH A 140 440 224 HOH HOH . 
E 4 HOH A 141 441 225 HOH HOH . 
E 4 HOH A 142 442 154 HOH HOH . 
E 4 HOH A 143 443 199 HOH HOH . 
E 4 HOH A 144 444 239 HOH HOH . 
E 4 HOH A 145 445 230 HOH HOH . 
E 4 HOH A 146 446 183 HOH HOH . 
E 4 HOH A 147 447 214 HOH HOH . 
E 4 HOH A 148 448 228 HOH HOH . 
E 4 HOH A 149 449 201 HOH HOH . 
E 4 HOH A 150 450 114 HOH HOH . 
E 4 HOH A 151 451 220 HOH HOH . 
E 4 HOH A 152 452 151 HOH HOH . 
E 4 HOH A 153 453 138 HOH HOH . 
E 4 HOH A 154 454 170 HOH HOH . 
E 4 HOH A 155 455 107 HOH HOH . 
E 4 HOH A 156 456 152 HOH HOH . 
E 4 HOH A 157 457 203 HOH HOH . 
E 4 HOH A 158 458 238 HOH HOH . 
E 4 HOH A 159 459 165 HOH HOH . 
E 4 HOH A 160 460 197 HOH HOH . 
E 4 HOH A 161 461 190 HOH HOH . 
E 4 HOH A 162 462 113 HOH HOH . 
E 4 HOH A 163 463 184 HOH HOH . 
E 4 HOH A 164 464 231 HOH HOH . 
E 4 HOH A 165 465 147 HOH HOH . 
E 4 HOH A 166 466 175 HOH HOH . 
E 4 HOH A 167 467 208 HOH HOH . 
E 4 HOH A 168 468 240 HOH HOH . 
E 4 HOH A 169 469 120 HOH HOH . 
E 4 HOH A 170 470 234 HOH HOH . 
E 4 HOH A 171 471 137 HOH HOH . 
E 4 HOH A 172 472 128 HOH HOH . 
E 4 HOH A 173 473 202 HOH HOH . 
E 4 HOH A 174 474 105 HOH HOH . 
E 4 HOH A 175 475 233 HOH HOH . 
E 4 HOH A 176 476 173 HOH HOH . 
E 4 HOH A 177 477 207 HOH HOH . 
E 4 HOH A 178 478 249 HOH HOH . 
E 4 HOH A 179 479 205 HOH HOH . 
E 4 HOH A 180 480 200 HOH HOH . 
E 4 HOH A 181 481 209 HOH HOH . 
E 4 HOH A 182 482 211 HOH HOH . 
E 4 HOH A 183 483 168 HOH HOH . 
E 4 HOH A 184 484 223 HOH HOH . 
E 4 HOH A 185 485 257 HOH HOH . 
E 4 HOH A 186 486 212 HOH HOH . 
E 4 HOH A 187 487 204 HOH HOH . 
E 4 HOH A 188 488 71 HOH HOH . 
F 4 HOH B 1 601 252 HOH HOH . 
F 4 HOH B 2 602 250 HOH HOH . 
F 4 HOH B 3 603 243 HOH HOH . 
F 4 HOH B 4 604 195 HOH HOH . 
F 4 HOH B 5 605 244 HOH HOH . 
F 4 HOH B 6 606 194 HOH HOH . 
F 4 HOH B 7 607 186 HOH HOH . 
F 4 HOH B 8 608 185 HOH HOH . 
F 4 HOH B 9 609 259 HOH HOH . 
F 4 HOH B 10 610 251 HOH HOH . 
F 4 HOH B 11 611 193 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 25.256 40.151 -0.652 1 28.43 ? C1 EDO 202 A 1 
HETATM 2 O O1 EDO . . . D 3 23.942 39.578 -0.501 1 25.44 ? O1 EDO 202 A 1 
HETATM 3 C C2 EDO . . . D 3 25.374 41.433 0.16 1 24.01 ? C2 EDO 202 A 1 
HETATM 4 O O2 EDO . . . D 3 25.03 41.096 1.494 1 21.5 ? O2 EDO 202 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           4 
#