data_5NNK # _model_server_result.job_id Nasy4YNKRBe2EomGvmmb4Q _model_server_result.datetime_utc '2025-01-25 13:51:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nnk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":102}' # _entry.id 5NNK # _exptl.entry_id 5NNK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NNK _cell.length_a 43.309 _cell.length_b 43.309 _cell.length_c 109.819 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NNK _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 43.309 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 127 n n N1 CM1 LDA sing 128 n n N1 CM2 LDA sing 129 n n N1 C1 LDA sing 130 n n CM1 HM11 LDA sing 131 n n CM1 HM12 LDA sing 132 n n CM1 HM13 LDA sing 133 n n CM2 HM21 LDA sing 134 n n CM2 HM22 LDA sing 135 n n CM2 HM23 LDA sing 136 n n C1 C2 LDA sing 137 n n C1 H11 LDA sing 138 n n C1 H12 LDA sing 139 n n C2 C3 LDA sing 140 n n C2 H21 LDA sing 141 n n C2 H22 LDA sing 142 n n C3 C4 LDA sing 143 n n C3 H31 LDA sing 144 n n C3 H32 LDA sing 145 n n C4 C5 LDA sing 146 n n C4 H41 LDA sing 147 n n C4 H42 LDA sing 148 n n C5 C6 LDA sing 149 n n C5 H51 LDA sing 150 n n C5 H52 LDA sing 151 n n C6 C7 LDA sing 152 n n C6 H61 LDA sing 153 n n C6 H62 LDA sing 154 n n C7 C8 LDA sing 155 n n C7 H71 LDA sing 156 n n C7 H72 LDA sing 157 n n C8 C9 LDA sing 158 n n C8 H81 LDA sing 159 n n C8 H82 LDA sing 160 n n C9 C10 LDA sing 161 n n C9 H91 LDA sing 162 n n C9 H92 LDA sing 163 n n C10 C11 LDA sing 164 n n C10 H101 LDA sing 165 n n C10 H102 LDA sing 166 n n C11 C12 LDA sing 167 n n C11 H111 LDA sing 168 n n C11 H112 LDA sing 169 n n C12 H121 LDA sing 170 n n C12 H122 LDA sing 171 n n C12 H123 LDA sing 172 n n # _atom_sites.entry_id 5NNK _atom_sites.fract_transf_matrix[1][1] 0.02309 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02309 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LDA A 1 101 4827 LDA LDA . C 2 LDA A 1 102 4828 LDA LDA . D 2 LDA A 1 103 4829 LDA LDA . E 3 HOH A 1 201 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . C 2 34.069 -4.266 8.054 1 132.67 ? N1 LDA 102 A 1 HETATM 2 O O1 LDA . . . C 2 34.009 -5.045 9.026 1 125.62 ? O1 LDA 102 A 1 HETATM 3 C CM1 LDA . . . C 2 34.74 -4.989 6.956 1 135 ? CM1 LDA 102 A 1 HETATM 4 C CM2 LDA . . . C 2 34.832 -3.095 8.547 1 124.8 ? CM2 LDA 102 A 1 HETATM 5 C C1 LDA . . . C 2 32.695 -3.968 7.671 1 138.19 ? C1 LDA 102 A 1 HETATM 6 C C2 LDA . . . C 2 32.657 -2.788 6.698 1 125.82 ? C2 LDA 102 A 1 HETATM 7 C C3 LDA . . . C 2 31.589 -2.947 5.616 1 112.18 ? C3 LDA 102 A 1 HETATM 8 C C4 LDA . . . C 2 30.277 -2.313 6.054 1 100.76 ? C4 LDA 102 A 1 HETATM 9 C C5 LDA . . . C 2 29.687 -3.007 7.277 1 91.36 ? C5 LDA 102 A 1 HETATM 10 C C6 LDA . . . C 2 28.231 -2.6 7.437 1 80.59 ? C6 LDA 102 A 1 HETATM 11 C C7 LDA . . . C 2 27.539 -3.354 8.562 1 71.99 ? C7 LDA 102 A 1 HETATM 12 C C8 LDA . . . C 2 26.039 -3.267 8.334 1 66.15 ? C8 LDA 102 A 1 HETATM 13 C C9 LDA . . . C 2 25.253 -3.903 9.47 1 60.63 ? C9 LDA 102 A 1 HETATM 14 C C10 LDA . . . C 2 23.911 -4.397 8.95 1 57.42 ? C10 LDA 102 A 1 HETATM 15 C C11 LDA . . . C 2 22.931 -4.59 10.098 1 58.7 ? C11 LDA 102 A 1 HETATM 16 C C12 LDA . . . C 2 21.778 -5.488 9.678 1 66.08 ? C12 LDA 102 A 1 HETATM 17 H HM11 LDA . . . C 2 34.998 -5.995 7.288 1 161.99 ? HM11 LDA 102 A 1 HETATM 18 H HM12 LDA . . . C 2 34.071 -5.049 6.098 1 161.99 ? HM12 LDA 102 A 1 HETATM 19 H HM13 LDA . . . C 2 35.648 -4.456 6.672 1 161.99 ? HM13 LDA 102 A 1 HETATM 20 H HM21 LDA . . . C 2 35.109 -3.254 9.588 1 149.76 ? HM21 LDA 102 A 1 HETATM 21 H HM22 LDA . . . C 2 35.733 -2.969 7.946 1 149.76 ? HM22 LDA 102 A 1 HETATM 22 H HM23 LDA . . . C 2 34.214 -2.2 8.468 1 149.76 ? HM23 LDA 102 A 1 HETATM 23 H H11 LDA . . . C 2 32.248 -4.844 7.201 1 165.83 ? H11 LDA 102 A 1 HETATM 24 H H12 LDA . . . C 2 32.111 -3.728 8.56 1 165.83 ? H12 LDA 102 A 1 HETATM 25 H H21 LDA . . . C 2 33.633 -2.686 6.224 1 150.98 ? H21 LDA 102 A 1 HETATM 26 H H22 LDA . . . C 2 32.465 -1.872 7.256 1 150.98 ? H22 LDA 102 A 1 HETATM 27 H H31 LDA . . . C 2 31.432 -4.007 5.414 1 134.61 ? H31 LDA 102 A 1 HETATM 28 H H32 LDA . . . C 2 31.932 -2.477 4.695 1 134.61 ? H32 LDA 102 A 1 HETATM 29 H H41 LDA . . . C 2 30.445 -1.261 6.284 1 120.91 ? H41 LDA 102 A 1 HETATM 30 H H42 LDA . . . C 2 29.562 -2.362 5.233 1 120.91 ? H42 LDA 102 A 1 HETATM 31 H H51 LDA . . . C 2 30.249 -2.727 8.168 1 109.63 ? H51 LDA 102 A 1 HETATM 32 H H52 LDA . . . C 2 29.756 -4.088 7.157 1 109.63 ? H52 LDA 102 A 1 HETATM 33 H H61 LDA . . . C 2 27.702 -2.787 6.502 1 96.71 ? H61 LDA 102 A 1 HETATM 34 H H62 LDA . . . C 2 28.178 -1.53 7.637 1 96.71 ? H62 LDA 102 A 1 HETATM 35 H H71 LDA . . . C 2 27.857 -4.397 8.564 1 86.39 ? H71 LDA 102 A 1 HETATM 36 H H72 LDA . . . C 2 27.798 -2.911 9.523 1 86.39 ? H72 LDA 102 A 1 HETATM 37 H H81 LDA . . . C 2 25.787 -3.766 7.398 1 79.38 ? H81 LDA 102 A 1 HETATM 38 H H82 LDA . . . C 2 25.75 -2.22 8.239 1 79.38 ? H82 LDA 102 A 1 HETATM 39 H H91 LDA . . . C 2 25.817 -4.738 9.885 1 72.76 ? H91 LDA 102 A 1 HETATM 40 H H92 LDA . . . C 2 25.094 -3.172 10.262 1 72.76 ? H92 LDA 102 A 1 HETATM 41 H H101 LDA . . . C 2 23.506 -3.675 8.242 1 68.91 ? H101 LDA 102 A 1 HETATM 42 H H102 LDA . . . C 2 24.049 -5.342 8.425 1 68.91 ? H102 LDA 102 A 1 HETATM 43 H H111 LDA . . . C 2 22.543 -3.621 10.412 1 70.44 ? H111 LDA 102 A 1 HETATM 44 H H112 LDA . . . C 2 23.449 -5.036 10.947 1 70.44 ? H112 LDA 102 A 1 HETATM 45 H H121 LDA . . . C 2 21.915 -5.793 8.64 1 79.29 ? H121 LDA 102 A 1 HETATM 46 H H122 LDA . . . C 2 21.754 -6.371 10.316 1 79.29 ? H122 LDA 102 A 1 HETATM 47 H H123 LDA . . . C 2 20.839 -4.943 9.775 1 79.29 ? H123 LDA 102 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 47 #