data_5NNT
#
_model_server_result.job_id            0YC9Lb_gGrtw1iNYFUCXMw 
_model_server_result.datetime_utc      '2025-01-25 11:11:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nnt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":101}' 
#
_entry.id    5NNT 
#
_exptl.entry_id    5NNT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              351.462 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'dodecyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NNT 
_cell.length_a            35.209 
_cell.length_b            43.703 
_cell.length_c            54.398 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NNT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C17 H38 N O4 P' 
_chem_comp.formula_weight    351.462 
_chem_comp.id                DPV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'dodecyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     dodecylphosphocholine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C5 DPV sing 58 n n 
N C6 DPV sing 59 n n 
N C7 DPV sing 60 n n 
N C8 DPV sing 61 n n 
P O1P DPV sing 62 n n 
P O2P DPV doub 63 n n 
P O3P DPV sing 64 n n 
P O4P DPV sing 65 n n 
C1 C2 DPV sing 66 n n 
C1 O3P DPV sing 67 n n 
C2 C3 DPV sing 68 n n 
C3 C15 DPV sing 69 n n 
C4 C5 DPV sing 70 n n 
C4 O4P DPV sing 71 n n 
C15 C16 DPV sing 72 n n 
C16 C17 DPV sing 73 n n 
C17 C18 DPV sing 74 n n 
C18 C19 DPV sing 75 n n 
C19 C20 DPV sing 76 n n 
C20 C21 DPV sing 77 n n 
C21 C22 DPV sing 78 n n 
C22 C23 DPV sing 79 n n 
C1 H1 DPV sing 80 n n 
C1 H1A DPV sing 81 n n 
C2 H2 DPV sing 82 n n 
C2 H2A DPV sing 83 n n 
C3 H3 DPV sing 84 n n 
C3 H3A DPV sing 85 n n 
C4 H4 DPV sing 86 n n 
C4 H4A DPV sing 87 n n 
C5 H5 DPV sing 88 n n 
C5 H5A DPV sing 89 n n 
C6 H6 DPV sing 90 n n 
C6 H6A DPV sing 91 n n 
C6 H6B DPV sing 92 n n 
C7 H7 DPV sing 93 n n 
C7 H7A DPV sing 94 n n 
C7 H7B DPV sing 95 n n 
C8 H8 DPV sing 96 n n 
C8 H8A DPV sing 97 n n 
C8 H8B DPV sing 98 n n 
C15 H15 DPV sing 99 n n 
C15 H15A DPV sing 100 n n 
C16 H16 DPV sing 101 n n 
C16 H16A DPV sing 102 n n 
C17 H17 DPV sing 103 n n 
C17 H17A DPV sing 104 n n 
C18 H18 DPV sing 105 n n 
C18 H18A DPV sing 106 n n 
C19 H19 DPV sing 107 n n 
C19 H19A DPV sing 108 n n 
C20 H20 DPV sing 109 n n 
C20 H20A DPV sing 110 n n 
C21 H21 DPV sing 111 n n 
C21 H21A DPV sing 112 n n 
C22 H22 DPV sing 113 n n 
C22 H22A DPV sing 114 n n 
C23 H23 DPV sing 115 n n 
C23 H23A DPV sing 116 n n 
C23 H23B DPV sing 117 n n 
#
_atom_sites.entry_id                     5NNT 
_atom_sites.fract_transf_matrix[1][1]    0.028402 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022882 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018383 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DPV A 1 101 1 DPV DPV . 
D 2 DPV B 1 101 2 DPV DPV . 
E 3 HOH A 1 201 8 HOH HOH . 
E 3 HOH A 2 202 4 HOH HOH . 
E 3 HOH A 3 203 9 HOH HOH . 
F 3 HOH B 1 201 6 HOH HOH . 
F 3 HOH B 2 202 10 HOH HOH . 
F 3 HOH B 3 203 3 HOH HOH . 
F 3 HOH B 4 204 5 HOH HOH . 
F 3 HOH B 5 205 2 HOH HOH . 
F 3 HOH B 6 206 11 HOH HOH . 
F 3 HOH B 7 207 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N DPV . . . D 2 10.181 -15.185 3.194 1 88.02 ? N DPV 101 B 1 
HETATM 2 P P DPV . . . D 2 6.118 -13.74 1.616 1 121.73 ? P DPV 101 B 1 
HETATM 3 C C1 DPV . . . D 2 4.191 -12.104 2.303 1 79.45 ? C1 DPV 101 B 1 
HETATM 4 C C2 DPV . . . D 2 2.871 -12.449 2.98 1 69.19 ? C2 DPV 101 B 1 
HETATM 5 C C3 DPV . . . D 2 2.479 -13.894 2.691 1 75.81 ? C3 DPV 101 B 1 
HETATM 6 C C4 DPV . . . D 2 8.711 -14.027 1.464 1 100.53 ? C4 DPV 101 B 1 
HETATM 7 C C5 DPV . . . D 2 10.024 -14.059 2.251 1 96.15 ? C5 DPV 101 B 1 
HETATM 8 C C6 DPV . . . D 2 11.607 -15.322 3.512 1 93.76 ? C6 DPV 101 B 1 
HETATM 9 C C7 DPV . . . D 2 9.448 -14.89 4.427 1 92.94 ? C7 DPV 101 B 1 
HETATM 10 C C8 DPV . . . D 2 9.755 -16.492 2.66 1 68.86 ? C8 DPV 101 B 1 
HETATM 11 C C15 DPV . . . D 2 2.674 -14.761 3.929 1 70.83 ? C15 DPV 101 B 1 
HETATM 12 C C16 DPV . . . D 2 1.545 -14.545 4.93 1 51.47 ? C16 DPV 101 B 1 
HETATM 13 C C17 DPV . . . D 2 2.019 -14.755 6.363 1 26.41 ? C17 DPV 101 B 1 
HETATM 14 C C18 DPV . . . D 2 0.819 -14.857 7.297 1 18.48 ? C18 DPV 101 B 1 
HETATM 15 C C19 DPV . . . D 2 1.232 -14.767 8.762 1 62.18 ? C19 DPV 101 B 1 
HETATM 16 O O1P DPV . . . D 2 5.55 -15.123 1.392 1 130.94 ? O1P DPV 101 B 1 
HETATM 17 C C20 DPV . . . D 2 0.038 -14.367 9.62 1 39.03 ? C20 DPV 101 B 1 
HETATM 18 C C21 DPV . . . D 2 0.014 -15.109 10.95 1 46.67 ? C21 DPV 101 B 1 
HETATM 19 C C22 DPV . . . D 2 -1.199 -14.685 11.772 1 50.42 ? C22 DPV 101 B 1 
HETATM 20 C C23 DPV . . . D 2 -1.489 -15.679 12.875 1 60.36 ? C23 DPV 101 B 1 
HETATM 21 O O2P DPV . . . D 2 6.276 -12.782 0.459 1 125.08 ? O2P DPV 101 B 1 
HETATM 22 O O3P DPV . . . D 2 5.214 -13.005 2.727 1 93.14 ? O3P DPV 101 B 1 
HETATM 23 O O4P DPV . . . D 2 7.567 -13.892 2.307 1 107.92 ? O4P DPV 101 B 1 
HETATM 24 H H1 DPV . . . D 2 4.075 -12.164 1.219 1 95.34 ? H1 DPV 101 B 1 
HETATM 25 H H1A DPV . . . D 2 4.476 -11.08 2.556 1 95.34 ? H1A DPV 101 B 1 
HETATM 26 H H2 DPV . . . D 2 2.964 -12.304 4.058 1 83.02 ? H2 DPV 101 B 1 
HETATM 27 H H2A DPV . . . D 2 2.088 -11.779 2.616 1 83.02 ? H2A DPV 101 B 1 
HETATM 28 H H3 DPV . . . D 2 1.434 -13.934 2.379 1 90.97 ? H3 DPV 101 B 1 
HETATM 29 H H3A DPV . . . D 2 3.091 -14.282 1.874 1 90.97 ? H3A DPV 101 B 1 
HETATM 30 H H4 DPV . . . D 2 8.736 -13.193 0.76 1 120.64 ? H4 DPV 101 B 1 
HETATM 31 H H4A DPV . . . D 2 8.62 -14.946 0.883 1 120.64 ? H4A DPV 101 B 1 
HETATM 32 H H5 DPV . . . D 2 10.852 -14.086 1.539 1 115.38 ? H5 DPV 101 B 1 
HETATM 33 H H5A DPV . . . D 2 10.114 -13.125 2.81 1 115.38 ? H5A DPV 101 B 1 
HETATM 34 H H6 DPV . . . D 2 11.957 -14.426 3.955 1 112.51 ? H6 DPV 101 B 1 
HETATM 35 H H6A DPV . . . D 2 11.742 -16.126 4.188 1 112.51 ? H6A DPV 101 B 1 
HETATM 36 H H6B DPV . . . D 2 12.15 -15.511 2.623 1 112.51 ? H6B DPV 101 B 1 
HETATM 37 H H7 DPV . . . D 2 8.421 -14.756 4.204 1 111.53 ? H7 DPV 101 B 1 
HETATM 38 H H7A DPV . . . D 2 9.833 -14.005 4.863 1 111.53 ? H7A DPV 101 B 1 
HETATM 39 H H7B DPV . . . D 2 9.559 -15.695 5.106 1 111.53 ? H7B DPV 101 B 1 
HETATM 40 H H8 DPV . . . D 2 10.43 -16.801 1.905 1 82.63 ? H8 DPV 101 B 1 
HETATM 41 H H8A DPV . . . D 2 8.782 -16.406 2.25 1 82.63 ? H8A DPV 101 B 1 
HETATM 42 H H8B DPV . . . D 2 9.747 -17.207 3.441 1 82.63 ? H8B DPV 101 B 1 
HETATM 43 H H15 DPV . . . D 2 2.704 -15.812 3.635 1 84.99 ? H15 DPV 101 B 1 
HETATM 44 H H15A DPV . . . D 2 3.629 -14.516 4.398 1 84.99 ? H15A DPV 101 B 1 
HETATM 45 H H16 DPV . . . D 2 0.731 -15.239 4.712 1 61.76 ? H16 DPV 101 B 1 
HETATM 46 H H16A DPV . . . D 2 1.156 -13.53 4.822 1 61.76 ? H16A DPV 101 B 1 
HETATM 47 H H17 DPV . . . D 2 2.652 -13.919 6.668 1 31.69 ? H17 DPV 101 B 1 
HETATM 48 H H17A DPV . . . D 2 2.611 -15.67 6.424 1 31.69 ? H17A DPV 101 B 1 
HETATM 49 H H18 DPV . . . D 2 0.115 -14.053 7.07 1 22.17 ? H18 DPV 101 B 1 
HETATM 50 H H18A DPV . . . D 2 0.306 -15.806 7.124 1 22.17 ? H18A DPV 101 B 1 
HETATM 51 H H19 DPV . . . D 2 1.616 -15.734 9.095 1 74.61 ? H19 DPV 101 B 1 
HETATM 52 H H19A DPV . . . D 2 2.029 -14.029 8.874 1 74.61 ? H19A DPV 101 B 1 
HETATM 53 H H20 DPV . . . D 2 0.075 -13.292 9.808 1 46.83 ? H20 DPV 101 B 1 
HETATM 54 H H20A DPV . . . D 2 -0.884 -14.577 9.074 1 46.83 ? H20A DPV 101 B 1 
HETATM 55 H H21 DPV . . . D 2 -0.025 -16.185 10.768 1 56 ? H21 DPV 101 B 1 
HETATM 56 H H21A DPV . . . D 2 0.928 -14.893 11.507 1 56 ? H21A DPV 101 B 1 
HETATM 57 H H22 DPV . . . D 2 -1.015 -13.701 12.209 1 60.5 ? H22 DPV 101 B 1 
HETATM 58 H H22A DPV . . . D 2 -2.07 -14.603 11.119 1 60.5 ? H22A DPV 101 B 1 
HETATM 59 H H23 DPV . . . D 2 -0.651 -15.745 13.52 1 72.43 ? H23 DPV 101 B 1 
HETATM 60 H H23A DPV . . . D 2 -2.334 -15.358 13.426 1 72.43 ? H23A DPV 101 B 1 
HETATM 61 H H23B DPV . . . D 2 -1.684 -16.629 12.451 1 72.43 ? H23B DPV 101 B 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           61 
#