data_5NO7 # _model_server_result.job_id aZcP01RxtYqIJpcNObdaiA _model_server_result.datetime_utc '2025-04-02 18:40:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5no7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":320}' # _entry.id 5NO7 # _exptl.entry_id 5NO7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NO7 _cell.length_a 203.754 _cell.length_b 203.754 _cell.length_c 110.586 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NO7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M,N,O,P,Q,R,S 1 1 B,H,I,J,K,L,T,U,V,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 M N N ? 8 N N N ? 8 O N N ? 8 P N N ? 8 Q N N ? 8 R N N ? 8 S N N ? 8 T N N ? 8 U N N ? 8 V N N ? 8 W N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing 6 ? 3 5 4 MAN MAN C1 O1 . O3 HO3 . sing 7 ? 3 6 3 MAN BMA C1 O1 . O3 HO3 . sing 8 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 9 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 10 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 11 ? 4 5 3 MAN BMA C1 O1 . O6 HO6 . sing 12 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 13 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 14 ? 5 4 3 MAN BMA C1 O1 . O3 HO3 . sing 15 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 16 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 17 ? 6 4 3 MAN BMA C1 O1 . O3 HO3 . sing 18 ? 6 5 4 MAN MAN C1 O1 . O2 HO2 . sing 19 ? 6 6 4 MAN MAN C1 O1 . O6 HO6 . sing 20 ? 6 7 3 MAN BMA C1 O1 . O6 HO6 . sing 21 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 300 NAG 2 n C NAG 2 C 2 NAG A 301 NAG 2 n C BMA 3 C 3 BMA A 302 BMA 3 n D NAG 1 D 1 NAG A 310 NAG 3 n D NAG 2 D 2 NAG A 311 NAG 3 n D BMA 3 D 3 BMA A 312 BMA 3 n D MAN 4 D 4 MAN A 313 MAN 3 n D MAN 5 D 5 MAN A 314 MAN 3 n D MAN 6 D 6 MAN A 315 MAN 4 n E NAG 1 E 1 NAG A 320 NAG 4 n E NAG 2 E 2 NAG A 321 NAG 4 n E BMA 3 E 3 BMA A 322 BMA 4 n E MAN 4 E 4 MAN A 323 MAN 4 n E MAN 5 E 5 MAN A 324 MAN 5 n F NAG 1 F 1 NAG A 330 NAG 5 n F NAG 2 F 2 NAG A 331 NAG 5 n F BMA 3 F 3 BMA A 332 BMA 5 n F MAN 4 F 4 MAN A 333 MAN 6 n G NAG 1 G 1 NAG A 340 NAG 6 n G NAG 2 G 2 NAG A 341 NAG 6 n G BMA 3 G 3 BMA A 342 BMA 6 n G MAN 4 G 4 MAN A 343 MAN 6 n G MAN 5 G 5 MAN A 345 MAN 6 n G MAN 6 G 6 MAN A 346 MAN 6 n G MAN 7 G 7 MAN A 344 MAN 2 n H NAG 1 H 1 NAG B 300 NAG 2 n H NAG 2 H 2 NAG B 301 NAG 2 n H BMA 3 H 3 BMA B 302 BMA 7 n I NAG 1 I 1 NAG B 310 NAG 7 n I NAG 2 I 2 NAG B 311 NAG 7 n J NAG 1 J 1 NAG B 320 NAG 7 n J NAG 2 J 2 NAG B 321 NAG 7 n K NAG 1 K 1 NAG B 330 NAG 7 n K NAG 2 K 2 NAG B 331 NAG 6 n L NAG 1 L 1 NAG B 340 NAG 6 n L NAG 2 L 2 NAG B 341 NAG 6 n L BMA 3 L 3 BMA B 342 BMA 6 n L MAN 4 L 4 MAN B 343 MAN 6 n L MAN 5 L 5 MAN B 345 MAN 6 n L MAN 6 L 6 MAN B 346 MAN 6 n L MAN 7 L 7 MAN B 344 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 67 A CYS 67 1_555 A SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 109 A CYS 109 1_555 A SG CYS 136 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf3 A SG CYS 153 A CYS 153 1_555 A SG CYS 158 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 160 A CYS 160 1_555 A SG CYS 182 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 202 A CYS 202 1_555 A SG CYS 218 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf6 B SG CYS 67 B CYS 67 1_555 B SG CYS 90 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf7 B SG CYS 109 B CYS 109 1_555 B SG CYS 136 B CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 B SG CYS 153 B CYS 153 1_555 B SG CYS 158 B CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf9 B SG CYS 160 B CYS 160 1_555 B SG CYS 182 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf10 B SG CYS 202 B CYS 202 1_555 B SG CYS 218 B CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 13 A ASN 13 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 A ND2 ASN 76 A ASN 76 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 A ND2 ASN 133 A ASN 133 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A ND2 ASN 183 A ASN 183 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale5 A ND2 ASN 217 A ASN 217 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 B ND2 ASN 13 B ASN 13 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 B ND2 ASN 76 B ASN 76 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 B ND2 ASN 133 B ASN 133 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale9 B ND2 ASN 183 B ASN 183 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale10 B ND2 ASN 217 B ASN 217 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale11 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale12 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale13 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale14 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale15 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale16 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale17 D O3 MAN . D MAN 4 1_555 D C1 MAN . D MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale18 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale19 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale20 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale21 E O6 BMA . E BMA 3 1_555 E C1 MAN . E MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale22 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale23 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale24 F O3 BMA . F BMA 3 1_555 F C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale25 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale26 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale27 G O3 BMA . G BMA 3 1_555 G C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale28 G O6 BMA . G BMA 3 1_555 G C1 MAN . G MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale29 G O2 MAN . G MAN 4 1_555 G C1 MAN . G MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale30 G O6 MAN . G MAN 4 1_555 G C1 MAN . G MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale31 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale32 H O4 NAG . H NAG 2 1_555 H C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale33 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale34 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale35 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale36 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale37 L O4 NAG . L NAG 2 1_555 L C1 BMA . L BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale38 L O3 BMA . L BMA 3 1_555 L C1 MAN . L MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale39 L O6 BMA . L BMA 3 1_555 L C1 MAN . L MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale40 L O2 MAN . L MAN 4 1_555 L C1 MAN . L MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale41 L O6 MAN . L MAN 4 1_555 L C1 MAN . L MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 366 n n S O2 SO4 doub 367 n n S O3 SO4 sing 368 n n S O4 SO4 sing 369 n n # _atom_sites.entry_id 5NO7 _atom_sites.fract_transf_matrix[1][1] 0.004908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009043 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 8 SO4 A 1 326 401 SO4 SO4 . N 8 SO4 A 1 327 402 SO4 SO4 . O 8 SO4 A 1 328 403 SO4 SO4 . P 8 SO4 A 1 329 404 SO4 SO4 . Q 8 SO4 A 1 330 405 SO4 SO4 . R 8 SO4 A 1 331 406 SO4 SO4 . S 8 SO4 A 1 332 407 SO4 SO4 . T 8 SO4 B 1 317 401 SO4 SO4 . U 8 SO4 B 1 318 402 SO4 SO4 . V 8 SO4 B 1 319 403 SO4 SO4 . W 8 SO4 B 1 320 404 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . W 8 72.074 14.489 -4.906 1 149.25 ? S SO4 320 B 1 HETATM 2 O O1 SO4 . . . W 8 71.535 15.685 -5.59 1 146.4 ? O1 SO4 320 B 1 HETATM 3 O O2 SO4 . . . W 8 73.464 14.248 -5.365 1 146.68 ? O2 SO4 320 B 1 HETATM 4 O O3 SO4 . . . W 8 71.229 13.311 -5.225 1 149.5 ? O3 SO4 320 B 1 HETATM 5 O O4 SO4 . . . W 8 72.061 14.726 -3.443 1 149.6 ? O4 SO4 320 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #