data_5NOM
#
_model_server_result.job_id            AsbWoRlfuKfpaYH36OHglg 
_model_server_result.datetime_utc      '2024-11-12 20:56:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nom 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":102}' 
#
_entry.id    5NOM 
#
_exptl.entry_id    5NOM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              59.07 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GUANIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5NOM 
_cell.length_a            55.7 
_cell.length_b            55.7 
_cell.length_c            132.58 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NOM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_455 y-1/3,x+1/3,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -27.85 16.079205 44.193333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A O3' A 16 A A 16 1_555 A P CBV 17 A CBV 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? 
covale ? covale2 A O3' CBV 17 A CBV 17 1_555 A P C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.581 ? 
hydrog WATSON-CRICK hydrog1 A N1 G 1 A G 1 1_555 A N3 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N2 G 1 A G 1 1_555 A O2 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O6 G 1 A G 1 1_555 A N4 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N1 G 2 A G 2 1_555 A N3 CBV 17 A CBV 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N2 G 2 A G 2 1_555 A O2 CBV 17 A CBV 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O6 G 2 A G 2 1_555 A N4 CBV 17 A CBV 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N3 U 3 A U 3 1_555 A N1 A 16 A A 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A O4 U 3 A U 3 1_555 A N6 A 16 A A 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N1 G 4 A G 4 1_555 A N3 C 15 A C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N2 G 4 A G 4 1_555 A O2 C 15 A C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A O6 G 4 A G 4 1_555 A N4 C 15 A C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N1 G 5 A G 5 1_555 A N3 C 14 A C 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N2 G 5 A G 5 1_555 A O2 C 14 A C 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A O6 G 5 A G 5 1_555 A N4 C 14 A C 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N1 G 6 A G 6 1_555 A N3 C 13 A C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N2 G 6 A G 6 1_555 A O2 C 13 A C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A O6 G 6 A G 6 1_555 A N4 C 13 A C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A N1 G 7 A G 7 1_555 A N3 C 12 A C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N2 G 7 A G 7 1_555 A O2 C 12 A C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A O6 G 7 A G 7 1_555 A N4 C 12 A C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C H5 N3' 
_chem_comp.formula_weight    59.07 
_chem_comp.id                GAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GUANIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C N1 GAI doub 152 n n 
C N2 GAI sing 153 n n 
C N3 GAI sing 154 n n 
N1 HN1 GAI sing 155 n n 
N2 HN21 GAI sing 156 n n 
N2 HN22 GAI sing 157 n n 
N3 HN31 GAI sing 158 n n 
N3 HN32 GAI sing 159 n n 
#
_atom_sites.entry_id                     5NOM 
_atom_sites.fract_transf_matrix[1][1]    0.017953 
_atom_sites.fract_transf_matrix[1][2]    0.010365 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020731 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007543 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 101 1 SO4 SO4 . 
C 3 GAI A 1 102 1 GAI GAI . 
D 4 NA A 1 103 1 NA NA . 
E 4 NA A 1 104 2 NA NA . 
F 5 HOH A 1 201 13 HOH HOH . 
F 5 HOH A 2 202 4 HOH HOH . 
F 5 HOH A 3 203 16 HOH HOH . 
F 5 HOH A 4 204 9 HOH HOH . 
F 5 HOH A 5 205 8 HOH HOH . 
F 5 HOH A 6 206 23 HOH HOH . 
F 5 HOH A 7 207 5 HOH HOH . 
F 5 HOH A 8 208 19 HOH HOH . 
F 5 HOH A 9 209 7 HOH HOH . 
F 5 HOH A 10 210 24 HOH HOH . 
F 5 HOH A 11 211 6 HOH HOH . 
F 5 HOH A 12 212 25 HOH HOH . 
F 5 HOH A 13 213 1 HOH HOH . 
F 5 HOH A 14 214 20 HOH HOH . 
F 5 HOH A 15 215 2 HOH HOH . 
F 5 HOH A 16 216 17 HOH HOH . 
F 5 HOH A 17 217 18 HOH HOH . 
F 5 HOH A 18 218 11 HOH HOH . 
F 5 HOH A 19 219 3 HOH HOH . 
F 5 HOH A 20 220 10 HOH HOH . 
F 5 HOH A 21 221 14 HOH HOH . 
F 5 HOH A 22 222 15 HOH HOH . 
F 5 HOH A 23 223 12 HOH HOH . 
F 5 HOH A 24 224 27 HOH HOH . 
F 5 HOH A 25 225 22 HOH HOH . 
F 5 HOH A 26 226 26 HOH HOH . 
F 5 HOH A 27 227 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C GAI . . . C 3 -14.623 15.957 21.605 1 44.06 ? C GAI 102 A 1 
HETATM 2 N N1 GAI . . . C 3 -13.458 15.577 21.381 1 43.58 ? N1 GAI 102 A 1 
HETATM 3 N N2 GAI . . . C 3 -15.576 15.072 22.175 1 39.49 ? N2 GAI 102 A 1 
HETATM 4 N N3 GAI . . . C 3 -15.021 17.286 21.324 1 48.19 ? N3 GAI 102 A 1 
HETATM 5 H HN1 GAI . . . C 3 -12.867 16.14 21.026 1 52.3 ? HN1 GAI 102 A 1 
HETATM 6 H HN21 GAI . . . C 3 -15.355 14.261 22.357 1 47.38 ? HN21 GAI 102 A 1 
HETATM 7 H HN22 GAI . . . C 3 -16.377 15.345 22.331 1 47.38 ? HN22 GAI 102 A 1 
HETATM 8 H HN31 GAI . . . C 3 -14.459 17.84 20.982 1 57.83 ? HN31 GAI 102 A 1 
HETATM 9 H HN32 GAI . . . C 3 -15.827 17.537 21.488 1 57.83 ? HN32 GAI 102 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           9 
#