data_5NOO
#
_model_server_result.job_id            sNmiApMdX-2sI9cUj4SYIg 
_model_server_result.datetime_utc      '2024-11-18 05:32:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5noo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    5NOO 
#
_exptl.entry_id    5NOO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              458.488 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TOMUDEX 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.36 
_cell.angle_gamma         90 
_cell.entry_id            5NOO 
_cell.length_a            70.085 
_cell.length_b            94.314 
_cell.length_c            122.048 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NOO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C21 H22 N4 O6 S' 
_chem_comp.formula_weight    458.488 
_chem_comp.id                D16 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TOMUDEX 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ZD1694;Raltitrexed 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 D16 sing 83 n n 
N1 C8A D16 sing 84 n n 
N1 HN1 D16 sing 85 n n 
C2 CM2 D16 sing 86 n n 
C2 N3 D16 doub 87 n n 
CM2 HM21 D16 sing 88 n n 
CM2 HM22 D16 sing 89 n n 
CM2 HM23 D16 sing 90 n n 
N3 C4 D16 sing 91 n n 
C4 O4 D16 doub 92 n n 
C4 C4A D16 sing 93 n n 
C4A C5 D16 doub 94 n y 
C4A C8A D16 sing 95 n y 
C5 C6 D16 sing 96 n y 
C5 H5 D16 sing 97 n n 
C6 C7 D16 doub 98 n y 
C6 C9 D16 sing 99 n n 
C7 C8 D16 sing 100 n y 
C7 H7 D16 sing 101 n n 
C8 C8A D16 doub 102 n y 
C8 H8 D16 sing 103 n n 
C9 N10 D16 sing 104 n n 
C9 H91 D16 sing 105 n n 
C9 H92 D16 sing 106 n n 
N10 C14 D16 sing 107 n n 
N10 CP1 D16 sing 108 n n 
C11 S13 D16 sing 109 n y 
C11 C16 D16 doub 110 n y 
C11 C D16 sing 111 n n 
S13 C14 D16 sing 112 n y 
C14 C15 D16 doub 113 n y 
C15 C16 D16 sing 114 n y 
C15 H15 D16 sing 115 n n 
C16 H16 D16 sing 116 n n 
C O D16 doub 117 n n 
C N D16 sing 118 n n 
N CA D16 sing 119 n n 
N HN D16 sing 120 n n 
CA CB D16 sing 121 n n 
CA CT D16 sing 122 n n 
CA HA D16 sing 123 n n 
CB CG D16 sing 124 n n 
CB HB1 D16 sing 125 n n 
CB HB2 D16 sing 126 n n 
CG CD D16 sing 127 n n 
CG HG1 D16 sing 128 n n 
CG HG2 D16 sing 129 n n 
CD OE1 D16 doub 130 n n 
CD OE2 D16 sing 131 n n 
OE2 HOE2 D16 sing 132 n n 
CT O1 D16 doub 133 n n 
CT O2 D16 sing 134 n n 
O2 HO2 D16 sing 135 n n 
CP1 HP11 D16 sing 136 n n 
CP1 HP12 D16 sing 137 n n 
CP1 HP13 D16 sing 138 n n 
#
_atom_sites.entry_id                     5NOO 
_atom_sites.fract_transf_matrix[1][1]    0.014268 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003919 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010603 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008497 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 UMP A 1 401 401 UMP UMP . 
F 3 D16 A 1 402 402 D16 D16 . 
G 2 UMP B 1 401 401 UMP UMP . 
H 3 D16 B 1 402 402 D16 D16 . 
I 2 UMP C 1 401 401 UMP UMP . 
J 3 D16 C 1 402 402 D16 D16 . 
K 2 UMP D 1 401 401 UMP UMP . 
L 3 D16 D 1 402 402 D16 D16 . 
M 4 HOH A 1 501 575 HOH HOH . 
M 4 HOH A 2 502 557 HOH HOH . 
M 4 HOH A 3 503 537 HOH HOH . 
M 4 HOH A 4 504 501 HOH HOH . 
M 4 HOH A 5 505 516 HOH HOH . 
M 4 HOH A 6 506 564 HOH HOH . 
M 4 HOH A 7 507 515 HOH HOH . 
M 4 HOH A 8 508 506 HOH HOH . 
M 4 HOH A 9 509 545 HOH HOH . 
M 4 HOH A 10 510 509 HOH HOH . 
M 4 HOH A 11 511 566 HOH HOH . 
M 4 HOH A 12 512 574 HOH HOH . 
M 4 HOH A 13 513 573 HOH HOH . 
M 4 HOH A 14 514 560 HOH HOH . 
M 4 HOH A 15 515 529 HOH HOH . 
M 4 HOH A 16 516 532 HOH HOH . 
M 4 HOH A 17 517 572 HOH HOH . 
N 4 HOH B 1 501 512 HOH HOH . 
N 4 HOH B 2 502 502 HOH HOH . 
N 4 HOH B 3 503 565 HOH HOH . 
N 4 HOH B 4 504 569 HOH HOH . 
N 4 HOH B 5 505 530 HOH HOH . 
N 4 HOH B 6 506 561 HOH HOH . 
N 4 HOH B 7 507 584 HOH HOH . 
N 4 HOH B 8 508 558 HOH HOH . 
N 4 HOH B 9 509 544 HOH HOH . 
N 4 HOH B 10 510 508 HOH HOH . 
N 4 HOH B 11 511 517 HOH HOH . 
N 4 HOH B 12 512 560 HOH HOH . 
N 4 HOH B 13 513 570 HOH HOH . 
N 4 HOH B 14 514 562 HOH HOH . 
N 4 HOH B 15 515 521 HOH HOH . 
N 4 HOH B 16 516 575 HOH HOH . 
N 4 HOH B 17 517 503 HOH HOH . 
N 4 HOH B 18 518 576 HOH HOH . 
N 4 HOH B 19 519 533 HOH HOH . 
N 4 HOH B 20 520 523 HOH HOH . 
N 4 HOH B 21 521 583 HOH HOH . 
N 4 HOH B 22 522 571 HOH HOH . 
N 4 HOH B 23 523 585 HOH HOH . 
N 4 HOH B 24 524 546 HOH HOH . 
O 4 HOH C 1 501 529 HOH HOH . 
O 4 HOH C 2 502 578 HOH HOH . 
O 4 HOH C 3 503 588 HOH HOH . 
O 4 HOH C 4 504 511 HOH HOH . 
O 4 HOH C 5 505 584 HOH HOH . 
O 4 HOH C 6 506 602 HOH HOH . 
O 4 HOH C 7 507 547 HOH HOH . 
O 4 HOH C 8 508 574 HOH HOH . 
O 4 HOH C 9 509 507 HOH HOH . 
O 4 HOH C 10 510 545 HOH HOH . 
O 4 HOH C 11 511 544 HOH HOH . 
O 4 HOH C 12 512 506 HOH HOH . 
O 4 HOH C 13 513 518 HOH HOH . 
O 4 HOH C 14 514 552 HOH HOH . 
O 4 HOH C 15 515 595 HOH HOH . 
O 4 HOH C 16 516 537 HOH HOH . 
O 4 HOH C 17 517 596 HOH HOH . 
O 4 HOH C 18 518 567 HOH HOH . 
O 4 HOH C 19 519 601 HOH HOH . 
O 4 HOH C 20 520 531 HOH HOH . 
O 4 HOH C 21 521 508 HOH HOH . 
O 4 HOH C 22 522 568 HOH HOH . 
O 4 HOH C 23 523 538 HOH HOH . 
O 4 HOH C 24 524 516 HOH HOH . 
O 4 HOH C 25 525 524 HOH HOH . 
O 4 HOH C 26 526 603 HOH HOH . 
O 4 HOH C 27 527 576 HOH HOH . 
O 4 HOH C 28 528 569 HOH HOH . 
O 4 HOH C 29 529 586 HOH HOH . 
O 4 HOH C 30 530 522 HOH HOH . 
O 4 HOH C 31 531 579 HOH HOH . 
O 4 HOH C 32 532 583 HOH HOH . 
O 4 HOH C 33 533 587 HOH HOH . 
O 4 HOH C 34 534 540 HOH HOH . 
O 4 HOH C 35 535 575 HOH HOH . 
P 4 HOH D 1 501 532 HOH HOH . 
P 4 HOH D 2 502 512 HOH HOH . 
P 4 HOH D 3 503 574 HOH HOH . 
P 4 HOH D 4 504 516 HOH HOH . 
P 4 HOH D 5 505 525 HOH HOH . 
P 4 HOH D 6 506 519 HOH HOH . 
P 4 HOH D 7 507 534 HOH HOH . 
P 4 HOH D 8 508 521 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 D16 . . . F 3 0.123 -20.661 -17.527 1 32.27 ? N1 D16 402 A 1 
HETATM 2 C C2 D16 . . . F 3 -0.84 -20.879 -18.438 1 32.48 ? C2 D16 402 A 1 
HETATM 3 C CM2 D16 . . . F 3 -1.078 -19.834 -19.491 1 31.53 ? CM2 D16 402 A 1 
HETATM 4 N N3 D16 . . . F 3 -1.616 -21.995 -18.451 1 32.68 ? N3 D16 402 A 1 
HETATM 5 C C4 D16 . . . F 3 -1.462 -22.976 -17.537 1 31.7 ? C4 D16 402 A 1 
HETATM 6 O O4 D16 . . . F 3 -2.18 -23.999 -17.56 1 31.01 ? O4 D16 402 A 1 
HETATM 7 C C4A D16 . . . F 3 -0.416 -22.792 -16.508 1 31.89 ? C4A D16 402 A 1 
HETATM 8 C C5 D16 . . . F 3 -0.162 -23.726 -15.518 1 33.03 ? C5 D16 402 A 1 
HETATM 9 C C6 D16 . . . F 3 0.848 -23.47 -14.585 1 33.65 ? C6 D16 402 A 1 
HETATM 10 C C7 D16 . . . F 3 1.6 -22.297 -14.643 1 33.38 ? C7 D16 402 A 1 
HETATM 11 C C8 D16 . . . F 3 1.371 -21.339 -15.625 1 32.32 ? C8 D16 402 A 1 
HETATM 12 C C8A D16 . . . F 3 0.379 -21.551 -16.566 1 31.66 ? C8A D16 402 A 1 
HETATM 13 C C9 D16 . . . F 3 1.175 -24.454 -13.483 1 33.82 ? C9 D16 402 A 1 
HETATM 14 N N10 D16 . . . F 3 0.4 -25.676 -13.63 1 34.2 ? N10 D16 402 A 1 
HETATM 15 C C11 D16 . . . F 3 1.934 -28.044 -16.201 1 34.97 ? C11 D16 402 A 1 
HETATM 16 S S13 D16 . . . F 3 2.046 -26.391 -15.699 1 35.45 ? S13 D16 402 A 1 
HETATM 17 C C14 D16 . . . F 3 0.849 -26.647 -14.486 1 35 ? C14 D16 402 A 1 
HETATM 18 C C15 D16 . . . F 3 0.368 -27.944 -14.464 1 34.53 ? C15 D16 402 A 1 
HETATM 19 C C16 D16 . . . F 3 0.991 -28.741 -15.439 1 34.64 ? C16 D16 402 A 1 
HETATM 20 C C D16 . . . F 3 2.829 -28.458 -17.319 1 35.84 ? C D16 402 A 1 
HETATM 21 O O D16 . . . F 3 3.773 -27.747 -17.63 1 34.59 ? O D16 402 A 1 
HETATM 22 N N D16 . . . F 3 2.556 -29.602 -17.946 1 38.25 ? N D16 402 A 1 
HETATM 23 C CA D16 . . . F 3 3.333 -30.086 -19.074 1 40.87 ? CA D16 402 A 1 
HETATM 24 C CB D16 . . . F 3 4.506 -30.956 -18.619 1 40.87 ? CB D16 402 A 1 
HETATM 25 C CG D16 . . . F 3 5.64 -30.133 -18.01 1 42.33 ? CG D16 402 A 1 
HETATM 26 C CD D16 . . . F 3 6.759 -31.042 -17.557 1 44.57 ? CD D16 402 A 1 
HETATM 27 O OE1 D16 . . . F 3 7.592 -30.586 -16.743 1 45.85 ? OE1 D16 402 A 1 
HETATM 28 O OE2 D16 . . . F 3 6.814 -32.205 -18.016 1 45.38 -1 OE2 D16 402 A 1 
HETATM 29 C CT D16 . . . F 3 2.449 -30.881 -19.993 1 42.51 ? CT D16 402 A 1 
HETATM 30 O O1 D16 . . . F 3 1.704 -31.759 -19.499 1 42.15 -1 O1 D16 402 A 1 
HETATM 31 O O2 D16 . . . F 3 2.487 -30.629 -21.218 1 42.98 ? O2 D16 402 A 1 
HETATM 32 C CP1 D16 . . . F 3 -0.818 -25.865 -12.846 1 34.26 ? CP1 D16 402 A 1 
#
_model_server_stats.io_time_ms              81 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#