data_5NOO
#
_model_server_result.job_id            dP1DxwyJkLQm_YcBTB7yng 
_model_server_result.datetime_utc      '2024-11-18 05:41:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5noo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":402}' 
#
_entry.id    5NOO 
#
_exptl.entry_id    5NOO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              458.488 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TOMUDEX 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.36 
_cell.angle_gamma         90 
_cell.entry_id            5NOO 
_cell.length_a            70.085 
_cell.length_b            94.314 
_cell.length_c            122.048 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NOO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C21 H22 N4 O6 S' 
_chem_comp.formula_weight    458.488 
_chem_comp.id                D16 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TOMUDEX 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ZD1694;Raltitrexed 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 D16 sing 83 n n 
N1 C8A D16 sing 84 n n 
N1 HN1 D16 sing 85 n n 
C2 CM2 D16 sing 86 n n 
C2 N3 D16 doub 87 n n 
CM2 HM21 D16 sing 88 n n 
CM2 HM22 D16 sing 89 n n 
CM2 HM23 D16 sing 90 n n 
N3 C4 D16 sing 91 n n 
C4 O4 D16 doub 92 n n 
C4 C4A D16 sing 93 n n 
C4A C5 D16 doub 94 n y 
C4A C8A D16 sing 95 n y 
C5 C6 D16 sing 96 n y 
C5 H5 D16 sing 97 n n 
C6 C7 D16 doub 98 n y 
C6 C9 D16 sing 99 n n 
C7 C8 D16 sing 100 n y 
C7 H7 D16 sing 101 n n 
C8 C8A D16 doub 102 n y 
C8 H8 D16 sing 103 n n 
C9 N10 D16 sing 104 n n 
C9 H91 D16 sing 105 n n 
C9 H92 D16 sing 106 n n 
N10 C14 D16 sing 107 n n 
N10 CP1 D16 sing 108 n n 
C11 S13 D16 sing 109 n y 
C11 C16 D16 doub 110 n y 
C11 C D16 sing 111 n n 
S13 C14 D16 sing 112 n y 
C14 C15 D16 doub 113 n y 
C15 C16 D16 sing 114 n y 
C15 H15 D16 sing 115 n n 
C16 H16 D16 sing 116 n n 
C O D16 doub 117 n n 
C N D16 sing 118 n n 
N CA D16 sing 119 n n 
N HN D16 sing 120 n n 
CA CB D16 sing 121 n n 
CA CT D16 sing 122 n n 
CA HA D16 sing 123 n n 
CB CG D16 sing 124 n n 
CB HB1 D16 sing 125 n n 
CB HB2 D16 sing 126 n n 
CG CD D16 sing 127 n n 
CG HG1 D16 sing 128 n n 
CG HG2 D16 sing 129 n n 
CD OE1 D16 doub 130 n n 
CD OE2 D16 sing 131 n n 
OE2 HOE2 D16 sing 132 n n 
CT O1 D16 doub 133 n n 
CT O2 D16 sing 134 n n 
O2 HO2 D16 sing 135 n n 
CP1 HP11 D16 sing 136 n n 
CP1 HP12 D16 sing 137 n n 
CP1 HP13 D16 sing 138 n n 
#
_atom_sites.entry_id                     5NOO 
_atom_sites.fract_transf_matrix[1][1]    0.014268 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003919 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010603 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008497 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 UMP A 1 401 401 UMP UMP . 
F 3 D16 A 1 402 402 D16 D16 . 
G 2 UMP B 1 401 401 UMP UMP . 
H 3 D16 B 1 402 402 D16 D16 . 
I 2 UMP C 1 401 401 UMP UMP . 
J 3 D16 C 1 402 402 D16 D16 . 
K 2 UMP D 1 401 401 UMP UMP . 
L 3 D16 D 1 402 402 D16 D16 . 
M 4 HOH A 1 501 575 HOH HOH . 
M 4 HOH A 2 502 557 HOH HOH . 
M 4 HOH A 3 503 537 HOH HOH . 
M 4 HOH A 4 504 501 HOH HOH . 
M 4 HOH A 5 505 516 HOH HOH . 
M 4 HOH A 6 506 564 HOH HOH . 
M 4 HOH A 7 507 515 HOH HOH . 
M 4 HOH A 8 508 506 HOH HOH . 
M 4 HOH A 9 509 545 HOH HOH . 
M 4 HOH A 10 510 509 HOH HOH . 
M 4 HOH A 11 511 566 HOH HOH . 
M 4 HOH A 12 512 574 HOH HOH . 
M 4 HOH A 13 513 573 HOH HOH . 
M 4 HOH A 14 514 560 HOH HOH . 
M 4 HOH A 15 515 529 HOH HOH . 
M 4 HOH A 16 516 532 HOH HOH . 
M 4 HOH A 17 517 572 HOH HOH . 
N 4 HOH B 1 501 512 HOH HOH . 
N 4 HOH B 2 502 502 HOH HOH . 
N 4 HOH B 3 503 565 HOH HOH . 
N 4 HOH B 4 504 569 HOH HOH . 
N 4 HOH B 5 505 530 HOH HOH . 
N 4 HOH B 6 506 561 HOH HOH . 
N 4 HOH B 7 507 584 HOH HOH . 
N 4 HOH B 8 508 558 HOH HOH . 
N 4 HOH B 9 509 544 HOH HOH . 
N 4 HOH B 10 510 508 HOH HOH . 
N 4 HOH B 11 511 517 HOH HOH . 
N 4 HOH B 12 512 560 HOH HOH . 
N 4 HOH B 13 513 570 HOH HOH . 
N 4 HOH B 14 514 562 HOH HOH . 
N 4 HOH B 15 515 521 HOH HOH . 
N 4 HOH B 16 516 575 HOH HOH . 
N 4 HOH B 17 517 503 HOH HOH . 
N 4 HOH B 18 518 576 HOH HOH . 
N 4 HOH B 19 519 533 HOH HOH . 
N 4 HOH B 20 520 523 HOH HOH . 
N 4 HOH B 21 521 583 HOH HOH . 
N 4 HOH B 22 522 571 HOH HOH . 
N 4 HOH B 23 523 585 HOH HOH . 
N 4 HOH B 24 524 546 HOH HOH . 
O 4 HOH C 1 501 529 HOH HOH . 
O 4 HOH C 2 502 578 HOH HOH . 
O 4 HOH C 3 503 588 HOH HOH . 
O 4 HOH C 4 504 511 HOH HOH . 
O 4 HOH C 5 505 584 HOH HOH . 
O 4 HOH C 6 506 602 HOH HOH . 
O 4 HOH C 7 507 547 HOH HOH . 
O 4 HOH C 8 508 574 HOH HOH . 
O 4 HOH C 9 509 507 HOH HOH . 
O 4 HOH C 10 510 545 HOH HOH . 
O 4 HOH C 11 511 544 HOH HOH . 
O 4 HOH C 12 512 506 HOH HOH . 
O 4 HOH C 13 513 518 HOH HOH . 
O 4 HOH C 14 514 552 HOH HOH . 
O 4 HOH C 15 515 595 HOH HOH . 
O 4 HOH C 16 516 537 HOH HOH . 
O 4 HOH C 17 517 596 HOH HOH . 
O 4 HOH C 18 518 567 HOH HOH . 
O 4 HOH C 19 519 601 HOH HOH . 
O 4 HOH C 20 520 531 HOH HOH . 
O 4 HOH C 21 521 508 HOH HOH . 
O 4 HOH C 22 522 568 HOH HOH . 
O 4 HOH C 23 523 538 HOH HOH . 
O 4 HOH C 24 524 516 HOH HOH . 
O 4 HOH C 25 525 524 HOH HOH . 
O 4 HOH C 26 526 603 HOH HOH . 
O 4 HOH C 27 527 576 HOH HOH . 
O 4 HOH C 28 528 569 HOH HOH . 
O 4 HOH C 29 529 586 HOH HOH . 
O 4 HOH C 30 530 522 HOH HOH . 
O 4 HOH C 31 531 579 HOH HOH . 
O 4 HOH C 32 532 583 HOH HOH . 
O 4 HOH C 33 533 587 HOH HOH . 
O 4 HOH C 34 534 540 HOH HOH . 
O 4 HOH C 35 535 575 HOH HOH . 
P 4 HOH D 1 501 532 HOH HOH . 
P 4 HOH D 2 502 512 HOH HOH . 
P 4 HOH D 3 503 574 HOH HOH . 
P 4 HOH D 4 504 516 HOH HOH . 
P 4 HOH D 5 505 525 HOH HOH . 
P 4 HOH D 6 506 519 HOH HOH . 
P 4 HOH D 7 507 534 HOH HOH . 
P 4 HOH D 8 508 521 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 D16 . . . H 3 -31.167 -20.338 9.423 1 44.09 ? N1 D16 402 B 1 
HETATM 2 C C2 D16 . . . H 3 -31.848 -21.062 8.519 1 43.44 ? C2 D16 402 B 1 
HETATM 3 C CM2 D16 . . . H 3 -32.241 -22.47 8.877 1 44.04 ? CM2 D16 402 B 1 
HETATM 4 N N3 D16 . . . H 3 -32.195 -20.582 7.297 1 43.75 ? N3 D16 402 B 1 
HETATM 5 C C4 D16 . . . H 3 -31.879 -19.328 6.907 1 45.04 ? C4 D16 402 B 1 
HETATM 6 O O4 D16 . . . H 3 -32.204 -18.9 5.776 1 45.66 ? O4 D16 402 B 1 
HETATM 7 C C4A D16 . . . H 3 -31.124 -18.484 7.861 1 44.42 ? C4A D16 402 B 1 
HETATM 8 C C5 D16 . . . H 3 -30.739 -17.182 7.581 1 45.84 ? C5 D16 402 B 1 
HETATM 9 C C6 D16 . . . H 3 -30.031 -16.458 8.545 1 46.63 ? C6 D16 402 B 1 
HETATM 10 C C7 D16 . . . H 3 -29.714 -17.029 9.778 1 45.22 ? C7 D16 402 B 1 
HETATM 11 C C8 D16 . . . H 3 -30.085 -18.331 10.093 1 44.67 ? C8 D16 402 B 1 
HETATM 12 C C8A D16 . . . H 3 -30.787 -19.083 9.166 1 43.96 ? C8A D16 402 B 1 
HETATM 13 C C9 D16 . . . H 3 -29.587 -15.029 8.308 1 47.38 ? C9 D16 402 B 1 
HETATM 14 N N10 D16 . . . H 3 -30.049 -14.511 7.025 1 49.09 ? N10 D16 402 B 1 
HETATM 15 C C11 D16 . . . H 3 -33.692 -13.345 7.119 1 52.05 ? C11 D16 402 B 1 
HETATM 16 S S13 D16 . . . H 3 -32.524 -14.136 8.128 1 51.68 ? S13 D16 402 B 1 
HETATM 17 C C14 D16 . . . H 3 -31.328 -14.032 6.891 1 49.5 ? C14 D16 402 B 1 
HETATM 18 C C15 D16 . . . H 3 -31.801 -13.419 5.734 1 48.79 ? C15 D16 402 B 1 
HETATM 19 C C16 D16 . . . H 3 -33.147 -13.03 5.867 1 49.85 ? C16 D16 402 B 1 
HETATM 20 C C D16 . . . H 3 -35.043 -13.152 7.723 1 52.83 ? C D16 402 B 1 
HETATM 21 O O D16 . . . H 3 -35.27 -13.649 8.813 1 53.77 ? O D16 402 B 1 
HETATM 22 N N D16 . . . H 3 -35.979 -12.478 7.052 1 54.02 ? N D16 402 B 1 
HETATM 23 C CA D16 . . . H 3 -37.343 -12.381 7.548 1 55.83 ? CA D16 402 B 1 
HETATM 24 C CB D16 . . . H 3 -37.963 -11.022 7.229 1 56.12 ? CB D16 402 B 1 
HETATM 25 C CG D16 . . . H 3 -38.936 -10.568 8.315 1 54.58 ? CG D16 402 B 1 
HETATM 26 C CD D16 . . . H 3 -38.277 -9.547 9.215 1 54.16 ? CD D16 402 B 1 
HETATM 27 O OE1 D16 . . . H 3 -38.891 -8.481 9.444 1 51.4 ? OE1 D16 402 B 1 
HETATM 28 O OE2 D16 . . . H 3 -37.153 -9.809 9.7 1 53.07 -1 OE2 D16 402 B 1 
HETATM 29 C CT D16 . . . H 3 -38.178 -13.494 6.98 1 59.22 ? CT D16 402 B 1 
HETATM 30 O O1 D16 . . . H 3 -38.745 -13.324 5.877 1 61.42 ? O1 D16 402 B 1 
HETATM 31 O O2 D16 . . . H 3 -38.257 -14.561 7.63 1 62.52 -1 O2 D16 402 B 1 
HETATM 32 C CP1 D16 . . . H 3 -29.125 -14.475 5.897 1 48.83 ? CP1 D16 402 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#