data_5NOV # _model_server_result.job_id ZUwXG3Vnq859M982yL-GRA _model_server_result.datetime_utc '2025-01-26 00:49:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nov # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5NOV # _exptl.entry_id 5NOV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 116.185 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3-diazinane-2-thione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NOV _cell.length_a 40.98 _cell.length_b 52.16 _cell.length_c 88.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NOV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H8 N2 S' _chem_comp.formula_weight 116.185 _chem_comp.id 93B _chem_comp.mon_nstd_flag . _chem_comp.name 1,3-diazinane-2-thione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C3 93B sing 1 n n N1 C 93B sing 2 n n C3 C2 93B sing 3 n n S C 93B doub 4 n n C N 93B sing 5 n n C2 C1 93B sing 6 n n N C1 93B sing 7 n n C2 H1 93B sing 8 n n C2 H2 93B sing 9 n n C3 H3 93B sing 10 n n C3 H4 93B sing 11 n n N1 H5 93B sing 12 n n C1 H6 93B sing 13 n n C1 H7 93B sing 14 n n N H8 93B sing 15 n n # _atom_sites.entry_id 5NOV _atom_sites.fract_transf_matrix[1][1] 0.024402 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 93B A 1 201 1 93B L61 . C 3 HOH A 1 301 23 HOH HOH . C 3 HOH A 2 302 66 HOH HOH . C 3 HOH A 3 303 32 HOH HOH . C 3 HOH A 4 304 19 HOH HOH . C 3 HOH A 5 305 48 HOH HOH . C 3 HOH A 6 306 63 HOH HOH . C 3 HOH A 7 307 58 HOH HOH . C 3 HOH A 8 308 15 HOH HOH . C 3 HOH A 9 309 20 HOH HOH . C 3 HOH A 10 310 36 HOH HOH . C 3 HOH A 11 311 25 HOH HOH . C 3 HOH A 12 312 7 HOH HOH . C 3 HOH A 13 313 27 HOH HOH . C 3 HOH A 14 314 9 HOH HOH . C 3 HOH A 15 315 31 HOH HOH . C 3 HOH A 16 316 33 HOH HOH . C 3 HOH A 17 317 54 HOH HOH . C 3 HOH A 18 318 50 HOH HOH . C 3 HOH A 19 319 11 HOH HOH . C 3 HOH A 20 320 42 HOH HOH . C 3 HOH A 21 321 4 HOH HOH . C 3 HOH A 22 322 57 HOH HOH . C 3 HOH A 23 323 5 HOH HOH . C 3 HOH A 24 324 35 HOH HOH . C 3 HOH A 25 325 8 HOH HOH . C 3 HOH A 26 326 47 HOH HOH . C 3 HOH A 27 327 34 HOH HOH . C 3 HOH A 28 328 39 HOH HOH . C 3 HOH A 29 329 2 HOH HOH . C 3 HOH A 30 330 40 HOH HOH . C 3 HOH A 31 331 6 HOH HOH . C 3 HOH A 32 332 10 HOH HOH . C 3 HOH A 33 333 14 HOH HOH . C 3 HOH A 34 334 3 HOH HOH . C 3 HOH A 35 335 22 HOH HOH . C 3 HOH A 36 336 44 HOH HOH . C 3 HOH A 37 337 28 HOH HOH . C 3 HOH A 38 338 13 HOH HOH . C 3 HOH A 39 339 64 HOH HOH . C 3 HOH A 40 340 12 HOH HOH . C 3 HOH A 41 341 29 HOH HOH . C 3 HOH A 42 342 18 HOH HOH . C 3 HOH A 43 343 17 HOH HOH . C 3 HOH A 44 344 38 HOH HOH . C 3 HOH A 45 345 1 HOH HOH . C 3 HOH A 46 346 45 HOH HOH . C 3 HOH A 47 347 41 HOH HOH . C 3 HOH A 48 348 43 HOH HOH . C 3 HOH A 49 349 30 HOH HOH . C 3 HOH A 50 350 49 HOH HOH . C 3 HOH A 51 351 16 HOH HOH . C 3 HOH A 52 352 21 HOH HOH . C 3 HOH A 53 353 24 HOH HOH . C 3 HOH A 54 354 61 HOH HOH . C 3 HOH A 55 355 62 HOH HOH . C 3 HOH A 56 356 51 HOH HOH . C 3 HOH A 57 357 59 HOH HOH . C 3 HOH A 58 358 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 93B . . . B 2 -0.527 11.524 -4.31 1 30.77 ? C2 93B 201 A 1 HETATM 2 C C3 93B . . . B 2 -0.209 12.336 -5.498 1 32.75 ? C3 93B 201 A 1 HETATM 3 N N1 93B . . . B 2 -1.014 13.54 -5.556 1 33.6 ? N1 93B 201 A 1 HETATM 4 S S 93B . . . B 2 -2.382 15.505 -4.588 1 33.72 ? S 93B 201 A 1 HETATM 5 C C 93B . . . B 2 -1.467 14.131 -4.462 1 32.94 ? C 93B 201 A 1 HETATM 6 C C1 93B . . . B 2 -0.493 12.354 -3.085 1 31.44 ? C1 93B 201 A 1 HETATM 7 N N 93B . . . B 2 -1.184 13.633 -3.26 1 32.4 ? N 93B 201 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #