data_5NP7 # _model_server_result.job_id nBTLaG_oVJBIpGpQKVT0Vw _model_server_result.datetime_utc '2025-05-21 15:07:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5np7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":600}' # _entry.id 5NP7 # _exptl.entry_id 5NP7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NP7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NP7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5NP7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 ANP A 1 600 600 ANP ANP . I 2 ANP B 1 600 600 ANP ANP . J 2 ANP C 1 600 600 ANP ANP . K 2 ANP D 1 600 600 ANP ANP . L 2 ANP E 1 600 600 ANP ANP . M 2 ANP F 1 600 600 ANP ANP . N 2 ANP G 1 600 600 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . N 2 149.17 121.484 188.656 1 149.42 ? PG ANP 600 G 1 HETATM 2 O O1G ANP . . . N 2 149.94 120.769 187.559 1 129.59 ? O1G ANP 600 G 1 HETATM 3 O O2G ANP . . . N 2 149.922 122.444 189.574 1 134 ? O2G ANP 600 G 1 HETATM 4 O O3G ANP . . . N 2 147.935 122.111 188.075 1 169.92 ? O3G ANP 600 G 1 HETATM 5 P PB ANP . . . N 2 149.576 118.812 190.035 1 120.23 ? PB ANP 600 G 1 HETATM 6 O O1B ANP . . . N 2 149.217 117.688 189.099 1 100.22 ? O1B ANP 600 G 1 HETATM 7 O O2B ANP . . . N 2 150.937 119.439 189.93 1 131.54 ? O2B ANP 600 G 1 HETATM 8 N N3B ANP . . . N 2 148.587 120.218 189.739 1 133.42 ? N3B ANP 600 G 1 HETATM 9 P PA ANP . . . N 2 150.913 117.652 192.259 1 141.45 ? PA ANP 600 G 1 HETATM 10 O O1A ANP . . . N 2 151.534 116.728 191.237 1 131.16 ? O1A ANP 600 G 1 HETATM 11 O O2A ANP . . . N 2 151.747 118.807 192.781 1 153.75 ? O2A ANP 600 G 1 HETATM 12 O O3A ANP . . . N 2 149.551 118.228 191.555 1 131.56 ? O3A ANP 600 G 1 HETATM 13 O O5' ANP . . . N 2 150.42 116.846 193.565 1 134.78 ? O5' ANP 600 G 1 HETATM 14 C C5' ANP . . . N 2 151.329 116.138 194.426 1 137.15 ? C5' ANP 600 G 1 HETATM 15 C C4' ANP . . . N 2 151.439 116.481 195.925 1 142.61 ? C4' ANP 600 G 1 HETATM 16 O O4' ANP . . . N 2 152.772 116.215 196.425 1 143.65 ? O4' ANP 600 G 1 HETATM 17 C C3' ANP . . . N 2 151.08 117.926 196.273 1 147.9 ? C3' ANP 600 G 1 HETATM 18 O O3' ANP . . . N 2 149.87 117.911 197.056 1 158.16 ? O3' ANP 600 G 1 HETATM 19 C C2' ANP . . . N 2 152.346 118.535 196.89 1 145.59 ? C2' ANP 600 G 1 HETATM 20 O O2' ANP . . . N 2 152.249 119.316 198.09 1 135.02 ? O2' ANP 600 G 1 HETATM 21 C C1' ANP . . . N 2 153.27 117.349 197.156 1 147.67 ? C1' ANP 600 G 1 HETATM 22 N N9 ANP . . . N 2 154.745 117.596 196.914 1 151.97 ? N9 ANP 600 G 1 HETATM 23 C C8 ANP . . . N 2 155.408 118.581 196.205 1 140.97 ? C8 ANP 600 G 1 HETATM 24 N N7 ANP . . . N 2 156.765 118.449 196.238 1 120.9 ? N7 ANP 600 G 1 HETATM 25 C C5 ANP . . . N 2 156.99 117.35 196.994 1 131.03 ? C5 ANP 600 G 1 HETATM 26 C C6 ANP . . . N 2 158.191 116.598 197.469 1 131.74 ? C6 ANP 600 G 1 HETATM 27 N N6 ANP . . . N 2 159.416 117.056 197.104 1 140.37 ? N6 ANP 600 G 1 HETATM 28 N N1 ANP . . . N 2 158.001 115.471 198.258 1 128.31 ? N1 ANP 600 G 1 HETATM 29 C C2 ANP . . . N 2 156.767 115.002 198.635 1 117.79 ? C2 ANP 600 G 1 HETATM 30 N N3 ANP . . . N 2 155.632 115.638 198.239 1 119.12 ? N3 ANP 600 G 1 HETATM 31 C C4 ANP . . . N 2 155.673 116.782 197.441 1 137.17 ? C4 ANP 600 G 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #