data_5NP8
#
_model_server_result.job_id            wUNOetQn8T2tGzs-TovWuA 
_model_server_result.datetime_utc      '2024-12-26 13:51:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5np8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    5NP8 
#
_exptl.entry_id    5NP8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.1 
_cell.angle_gamma         90 
_cell.entry_id            5NP8 
_cell.length_a            35.87 
_cell.length_b            103.9 
_cell.length_c            50.65 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NP8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 141 n n 
C1 C2 EDO sing 142 n n 
C1 H11 EDO sing 143 n n 
C1 H12 EDO sing 144 n n 
O1 HO1 EDO sing 145 n n 
C2 O2 EDO sing 146 n n 
C2 H21 EDO sing 147 n n 
C2 H22 EDO sing 148 n n 
O2 HO2 EDO sing 149 n n 
#
_atom_sites.entry_id                     5NP8 
_atom_sites.fract_transf_matrix[1][1]    0.027878 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004465 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009625 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019995 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 93T A 1 501 1 93T DRG . 
C 3 EDO A 1 502 1 EDO EDO . 
D 3 EDO A 1 503 2 EDO EDO . 
E 3 EDO A 1 504 3 EDO EDO . 
F 4 3PG A 1 505 1 3PG 3PG . 
G 5 HOH A 1 601 278 HOH HOH . 
G 5 HOH A 2 602 111 HOH HOH . 
G 5 HOH A 3 603 156 HOH HOH . 
G 5 HOH A 4 604 310 HOH HOH . 
G 5 HOH A 5 605 100 HOH HOH . 
G 5 HOH A 6 606 62 HOH HOH . 
G 5 HOH A 7 607 78 HOH HOH . 
G 5 HOH A 8 608 113 HOH HOH . 
G 5 HOH A 9 609 244 HOH HOH . 
G 5 HOH A 10 610 340 HOH HOH . 
G 5 HOH A 11 611 39 HOH HOH . 
G 5 HOH A 12 612 333 HOH HOH . 
G 5 HOH A 13 613 253 HOH HOH . 
G 5 HOH A 14 614 125 HOH HOH . 
G 5 HOH A 15 615 326 HOH HOH . 
G 5 HOH A 16 616 252 HOH HOH . 
G 5 HOH A 17 617 257 HOH HOH . 
G 5 HOH A 18 618 279 HOH HOH . 
G 5 HOH A 19 619 95 HOH HOH . 
G 5 HOH A 20 620 88 HOH HOH . 
G 5 HOH A 21 621 68 HOH HOH . 
G 5 HOH A 22 622 109 HOH HOH . 
G 5 HOH A 23 623 261 HOH HOH . 
G 5 HOH A 24 624 259 HOH HOH . 
G 5 HOH A 25 625 238 HOH HOH . 
G 5 HOH A 26 626 82 HOH HOH . 
G 5 HOH A 27 627 189 HOH HOH . 
G 5 HOH A 28 628 153 HOH HOH . 
G 5 HOH A 29 629 15 HOH HOH . 
G 5 HOH A 30 630 239 HOH HOH . 
G 5 HOH A 31 631 313 HOH HOH . 
G 5 HOH A 32 632 298 HOH HOH . 
G 5 HOH A 33 633 170 HOH HOH . 
G 5 HOH A 34 634 254 HOH HOH . 
G 5 HOH A 35 635 135 HOH HOH . 
G 5 HOH A 36 636 232 HOH HOH . 
G 5 HOH A 37 637 274 HOH HOH . 
G 5 HOH A 38 638 20 HOH HOH . 
G 5 HOH A 39 639 211 HOH HOH . 
G 5 HOH A 40 640 165 HOH HOH . 
G 5 HOH A 41 641 198 HOH HOH . 
G 5 HOH A 42 642 121 HOH HOH . 
G 5 HOH A 43 643 192 HOH HOH . 
G 5 HOH A 44 644 26 HOH HOH . 
G 5 HOH A 45 645 240 HOH HOH . 
G 5 HOH A 46 646 307 HOH HOH . 
G 5 HOH A 47 647 36 HOH HOH . 
G 5 HOH A 48 648 346 HOH HOH . 
G 5 HOH A 49 649 56 HOH HOH . 
G 5 HOH A 50 650 342 HOH HOH . 
G 5 HOH A 51 651 217 HOH HOH . 
G 5 HOH A 52 652 345 HOH HOH . 
G 5 HOH A 53 653 151 HOH HOH . 
G 5 HOH A 54 654 186 HOH HOH . 
G 5 HOH A 55 655 119 HOH HOH . 
G 5 HOH A 56 656 73 HOH HOH . 
G 5 HOH A 57 657 320 HOH HOH . 
G 5 HOH A 58 658 48 HOH HOH . 
G 5 HOH A 59 659 157 HOH HOH . 
G 5 HOH A 60 660 164 HOH HOH . 
G 5 HOH A 61 661 133 HOH HOH . 
G 5 HOH A 62 662 60 HOH HOH . 
G 5 HOH A 63 663 101 HOH HOH . 
G 5 HOH A 64 664 102 HOH HOH . 
G 5 HOH A 65 665 145 HOH HOH . 
G 5 HOH A 66 666 99 HOH HOH . 
G 5 HOH A 67 667 2 HOH HOH . 
G 5 HOH A 68 668 344 HOH HOH . 
G 5 HOH A 69 669 57 HOH HOH . 
G 5 HOH A 70 670 161 HOH HOH . 
G 5 HOH A 71 671 297 HOH HOH . 
G 5 HOH A 72 672 61 HOH HOH . 
G 5 HOH A 73 673 190 HOH HOH . 
G 5 HOH A 74 674 338 HOH HOH . 
G 5 HOH A 75 675 277 HOH HOH . 
G 5 HOH A 76 676 90 HOH HOH . 
G 5 HOH A 77 677 21 HOH HOH . 
G 5 HOH A 78 678 163 HOH HOH . 
G 5 HOH A 79 679 24 HOH HOH . 
G 5 HOH A 80 680 84 HOH HOH . 
G 5 HOH A 81 681 118 HOH HOH . 
G 5 HOH A 82 682 180 HOH HOH . 
G 5 HOH A 83 683 7 HOH HOH . 
G 5 HOH A 84 684 168 HOH HOH . 
G 5 HOH A 85 685 302 HOH HOH . 
G 5 HOH A 86 686 329 HOH HOH . 
G 5 HOH A 87 687 49 HOH HOH . 
G 5 HOH A 88 688 75 HOH HOH . 
G 5 HOH A 89 689 266 HOH HOH . 
G 5 HOH A 90 690 13 HOH HOH . 
G 5 HOH A 91 691 44 HOH HOH . 
G 5 HOH A 92 692 248 HOH HOH . 
G 5 HOH A 93 693 74 HOH HOH . 
G 5 HOH A 94 694 1 HOH HOH . 
G 5 HOH A 95 695 41 HOH HOH . 
G 5 HOH A 96 696 18 HOH HOH . 
G 5 HOH A 97 697 311 HOH HOH . 
G 5 HOH A 98 698 323 HOH HOH . 
G 5 HOH A 99 699 184 HOH HOH . 
G 5 HOH A 100 700 5 HOH HOH . 
G 5 HOH A 101 701 22 HOH HOH . 
G 5 HOH A 102 702 67 HOH HOH . 
G 5 HOH A 103 703 43 HOH HOH . 
G 5 HOH A 104 704 11 HOH HOH . 
G 5 HOH A 105 705 193 HOH HOH . 
G 5 HOH A 106 706 128 HOH HOH . 
G 5 HOH A 107 707 29 HOH HOH . 
G 5 HOH A 108 708 247 HOH HOH . 
G 5 HOH A 109 709 66 HOH HOH . 
G 5 HOH A 110 710 316 HOH HOH . 
G 5 HOH A 111 711 300 HOH HOH . 
G 5 HOH A 112 712 268 HOH HOH . 
G 5 HOH A 113 713 96 HOH HOH . 
G 5 HOH A 114 714 30 HOH HOH . 
G 5 HOH A 115 715 285 HOH HOH . 
G 5 HOH A 116 716 58 HOH HOH . 
G 5 HOH A 117 717 120 HOH HOH . 
G 5 HOH A 118 718 233 HOH HOH . 
G 5 HOH A 119 719 40 HOH HOH . 
G 5 HOH A 120 720 50 HOH HOH . 
G 5 HOH A 121 721 166 HOH HOH . 
G 5 HOH A 122 722 343 HOH HOH . 
G 5 HOH A 123 723 105 HOH HOH . 
G 5 HOH A 124 724 115 HOH HOH . 
G 5 HOH A 125 725 124 HOH HOH . 
G 5 HOH A 126 726 267 HOH HOH . 
G 5 HOH A 127 727 16 HOH HOH . 
G 5 HOH A 128 728 71 HOH HOH . 
G 5 HOH A 129 729 25 HOH HOH . 
G 5 HOH A 130 730 53 HOH HOH . 
G 5 HOH A 131 731 37 HOH HOH . 
G 5 HOH A 132 732 270 HOH HOH . 
G 5 HOH A 133 733 337 HOH HOH . 
G 5 HOH A 134 734 106 HOH HOH . 
G 5 HOH A 135 735 27 HOH HOH . 
G 5 HOH A 136 736 46 HOH HOH . 
G 5 HOH A 137 737 122 HOH HOH . 
G 5 HOH A 138 738 199 HOH HOH . 
G 5 HOH A 139 739 64 HOH HOH . 
G 5 HOH A 140 740 146 HOH HOH . 
G 5 HOH A 141 741 301 HOH HOH . 
G 5 HOH A 142 742 144 HOH HOH . 
G 5 HOH A 143 743 260 HOH HOH . 
G 5 HOH A 144 744 9 HOH HOH . 
G 5 HOH A 145 745 42 HOH HOH . 
G 5 HOH A 146 746 103 HOH HOH . 
G 5 HOH A 147 747 292 HOH HOH . 
G 5 HOH A 148 748 136 HOH HOH . 
G 5 HOH A 149 749 280 HOH HOH . 
G 5 HOH A 150 750 295 HOH HOH . 
G 5 HOH A 151 751 10 HOH HOH . 
G 5 HOH A 152 752 219 HOH HOH . 
G 5 HOH A 153 753 296 HOH HOH . 
G 5 HOH A 154 754 289 HOH HOH . 
G 5 HOH A 155 755 4 HOH HOH . 
G 5 HOH A 156 756 12 HOH HOH . 
G 5 HOH A 157 757 241 HOH HOH . 
G 5 HOH A 158 758 52 HOH HOH . 
G 5 HOH A 159 759 235 HOH HOH . 
G 5 HOH A 160 760 70 HOH HOH . 
G 5 HOH A 161 761 79 HOH HOH . 
G 5 HOH A 162 762 245 HOH HOH . 
G 5 HOH A 163 763 138 HOH HOH . 
G 5 HOH A 164 764 17 HOH HOH . 
G 5 HOH A 165 765 32 HOH HOH . 
G 5 HOH A 166 766 14 HOH HOH . 
G 5 HOH A 167 767 341 HOH HOH . 
G 5 HOH A 168 768 110 HOH HOH . 
G 5 HOH A 169 769 28 HOH HOH . 
G 5 HOH A 170 770 305 HOH HOH . 
G 5 HOH A 171 771 149 HOH HOH . 
G 5 HOH A 172 772 127 HOH HOH . 
G 5 HOH A 173 773 251 HOH HOH . 
G 5 HOH A 174 774 287 HOH HOH . 
G 5 HOH A 175 775 229 HOH HOH . 
G 5 HOH A 176 776 83 HOH HOH . 
G 5 HOH A 177 777 290 HOH HOH . 
G 5 HOH A 178 778 281 HOH HOH . 
G 5 HOH A 179 779 312 HOH HOH . 
G 5 HOH A 180 780 308 HOH HOH . 
G 5 HOH A 181 781 177 HOH HOH . 
G 5 HOH A 182 782 283 HOH HOH . 
G 5 HOH A 183 783 86 HOH HOH . 
G 5 HOH A 184 784 134 HOH HOH . 
G 5 HOH A 185 785 258 HOH HOH . 
G 5 HOH A 186 786 45 HOH HOH . 
G 5 HOH A 187 787 51 HOH HOH . 
G 5 HOH A 188 788 210 HOH HOH . 
G 5 HOH A 189 789 108 HOH HOH . 
G 5 HOH A 190 790 242 HOH HOH . 
G 5 HOH A 191 791 23 HOH HOH . 
G 5 HOH A 192 792 286 HOH HOH . 
G 5 HOH A 193 793 167 HOH HOH . 
G 5 HOH A 194 794 112 HOH HOH . 
G 5 HOH A 195 795 162 HOH HOH . 
G 5 HOH A 196 796 331 HOH HOH . 
G 5 HOH A 197 797 93 HOH HOH . 
G 5 HOH A 198 798 336 HOH HOH . 
G 5 HOH A 199 799 6 HOH HOH . 
G 5 HOH A 200 800 282 HOH HOH . 
G 5 HOH A 201 801 306 HOH HOH . 
G 5 HOH A 202 802 77 HOH HOH . 
G 5 HOH A 203 803 237 HOH HOH . 
G 5 HOH A 204 804 273 HOH HOH . 
G 5 HOH A 205 805 116 HOH HOH . 
G 5 HOH A 206 806 65 HOH HOH . 
G 5 HOH A 207 807 226 HOH HOH . 
G 5 HOH A 208 808 330 HOH HOH . 
G 5 HOH A 209 809 218 HOH HOH . 
G 5 HOH A 210 810 236 HOH HOH . 
G 5 HOH A 211 811 203 HOH HOH . 
G 5 HOH A 212 812 187 HOH HOH . 
G 5 HOH A 213 813 47 HOH HOH . 
G 5 HOH A 214 814 276 HOH HOH . 
G 5 HOH A 215 815 332 HOH HOH . 
G 5 HOH A 216 816 98 HOH HOH . 
G 5 HOH A 217 817 225 HOH HOH . 
G 5 HOH A 218 818 334 HOH HOH . 
G 5 HOH A 219 819 54 HOH HOH . 
G 5 HOH A 220 820 264 HOH HOH . 
G 5 HOH A 221 821 288 HOH HOH . 
G 5 HOH A 222 822 224 HOH HOH . 
G 5 HOH A 223 823 160 HOH HOH . 
G 5 HOH A 224 824 227 HOH HOH . 
G 5 HOH A 225 825 221 HOH HOH . 
G 5 HOH A 226 826 8 HOH HOH . 
G 5 HOH A 227 827 204 HOH HOH . 
G 5 HOH A 228 828 97 HOH HOH . 
G 5 HOH A 229 829 181 HOH HOH . 
G 5 HOH A 230 830 222 HOH HOH . 
G 5 HOH A 231 831 216 HOH HOH . 
G 5 HOH A 232 832 234 HOH HOH . 
G 5 HOH A 233 833 200 HOH HOH . 
G 5 HOH A 234 834 220 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 18.754 -25.618 4.023 1 27.13 ? C1 EDO 502 A 1 
HETATM 2 O O1 EDO . . . C 3 20.152 -25.438 4.398 1 31.68 ? O1 EDO 502 A 1 
HETATM 3 C C2 EDO . . . C 3 18.588 -25.414 2.543 1 24.3 ? C2 EDO 502 A 1 
HETATM 4 O O2 EDO . . . C 3 18.266 -26.615 1.817 1 33.65 ? O2 EDO 502 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#