data_5NP8 # _model_server_result.job_id rGuQtCRYVSTYYlM9JCwQhw _model_server_result.datetime_utc '2024-12-26 13:46:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5np8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 5NP8 # _exptl.entry_id 5NP8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.057 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-PHOSPHOGLYCERIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.1 _cell.angle_gamma 90 _cell.entry_id 5NP8 _cell.length_a 35.87 _cell.length_b 103.9 _cell.length_c 50.65 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H7 O7 P' _chem_comp.formula_weight 186.057 _chem_comp.id 3PG _chem_comp.mon_nstd_flag . _chem_comp.name '3-PHOSPHOGLYCERIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 3PG doub 1 n n C1 O2 3PG sing 2 n n C1 C2 3PG sing 3 n n O2 HO2 3PG sing 4 n n C2 O3 3PG sing 5 n n C2 C3 3PG sing 6 n n C2 H2 3PG sing 7 n n O3 HO3 3PG sing 8 n n C3 O1P 3PG sing 9 n n C3 H31 3PG sing 10 n n C3 H32 3PG sing 11 n n O1P P 3PG sing 12 n n P O2P 3PG doub 13 n n P O3P 3PG sing 14 n n P O4P 3PG sing 15 n n O3P HOP3 3PG sing 16 n n O4P HOP4 3PG sing 17 n n # _atom_sites.entry_id 5NP8 _atom_sites.fract_transf_matrix[1][1] 0.027878 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004465 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019995 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 93T A 1 501 1 93T DRG . C 3 EDO A 1 502 1 EDO EDO . D 3 EDO A 1 503 2 EDO EDO . E 3 EDO A 1 504 3 EDO EDO . F 4 3PG A 1 505 1 3PG 3PG . G 5 HOH A 1 601 278 HOH HOH . G 5 HOH A 2 602 111 HOH HOH . G 5 HOH A 3 603 156 HOH HOH . G 5 HOH A 4 604 310 HOH HOH . G 5 HOH A 5 605 100 HOH HOH . G 5 HOH A 6 606 62 HOH HOH . G 5 HOH A 7 607 78 HOH HOH . G 5 HOH A 8 608 113 HOH HOH . G 5 HOH A 9 609 244 HOH HOH . G 5 HOH A 10 610 340 HOH HOH . G 5 HOH A 11 611 39 HOH HOH . G 5 HOH A 12 612 333 HOH HOH . G 5 HOH A 13 613 253 HOH HOH . G 5 HOH A 14 614 125 HOH HOH . G 5 HOH A 15 615 326 HOH HOH . G 5 HOH A 16 616 252 HOH HOH . G 5 HOH A 17 617 257 HOH HOH . G 5 HOH A 18 618 279 HOH HOH . G 5 HOH A 19 619 95 HOH HOH . G 5 HOH A 20 620 88 HOH HOH . G 5 HOH A 21 621 68 HOH HOH . G 5 HOH A 22 622 109 HOH HOH . G 5 HOH A 23 623 261 HOH HOH . G 5 HOH A 24 624 259 HOH HOH . G 5 HOH A 25 625 238 HOH HOH . G 5 HOH A 26 626 82 HOH HOH . G 5 HOH A 27 627 189 HOH HOH . G 5 HOH A 28 628 153 HOH HOH . G 5 HOH A 29 629 15 HOH HOH . G 5 HOH A 30 630 239 HOH HOH . G 5 HOH A 31 631 313 HOH HOH . G 5 HOH A 32 632 298 HOH HOH . G 5 HOH A 33 633 170 HOH HOH . G 5 HOH A 34 634 254 HOH HOH . G 5 HOH A 35 635 135 HOH HOH . G 5 HOH A 36 636 232 HOH HOH . G 5 HOH A 37 637 274 HOH HOH . G 5 HOH A 38 638 20 HOH HOH . G 5 HOH A 39 639 211 HOH HOH . G 5 HOH A 40 640 165 HOH HOH . G 5 HOH A 41 641 198 HOH HOH . G 5 HOH A 42 642 121 HOH HOH . G 5 HOH A 43 643 192 HOH HOH . G 5 HOH A 44 644 26 HOH HOH . G 5 HOH A 45 645 240 HOH HOH . G 5 HOH A 46 646 307 HOH HOH . G 5 HOH A 47 647 36 HOH HOH . G 5 HOH A 48 648 346 HOH HOH . G 5 HOH A 49 649 56 HOH HOH . G 5 HOH A 50 650 342 HOH HOH . G 5 HOH A 51 651 217 HOH HOH . G 5 HOH A 52 652 345 HOH HOH . G 5 HOH A 53 653 151 HOH HOH . G 5 HOH A 54 654 186 HOH HOH . G 5 HOH A 55 655 119 HOH HOH . G 5 HOH A 56 656 73 HOH HOH . G 5 HOH A 57 657 320 HOH HOH . G 5 HOH A 58 658 48 HOH HOH . G 5 HOH A 59 659 157 HOH HOH . G 5 HOH A 60 660 164 HOH HOH . G 5 HOH A 61 661 133 HOH HOH . G 5 HOH A 62 662 60 HOH HOH . G 5 HOH A 63 663 101 HOH HOH . G 5 HOH A 64 664 102 HOH HOH . G 5 HOH A 65 665 145 HOH HOH . G 5 HOH A 66 666 99 HOH HOH . G 5 HOH A 67 667 2 HOH HOH . G 5 HOH A 68 668 344 HOH HOH . G 5 HOH A 69 669 57 HOH HOH . G 5 HOH A 70 670 161 HOH HOH . G 5 HOH A 71 671 297 HOH HOH . G 5 HOH A 72 672 61 HOH HOH . G 5 HOH A 73 673 190 HOH HOH . G 5 HOH A 74 674 338 HOH HOH . G 5 HOH A 75 675 277 HOH HOH . G 5 HOH A 76 676 90 HOH HOH . G 5 HOH A 77 677 21 HOH HOH . G 5 HOH A 78 678 163 HOH HOH . G 5 HOH A 79 679 24 HOH HOH . G 5 HOH A 80 680 84 HOH HOH . G 5 HOH A 81 681 118 HOH HOH . G 5 HOH A 82 682 180 HOH HOH . G 5 HOH A 83 683 7 HOH HOH . G 5 HOH A 84 684 168 HOH HOH . G 5 HOH A 85 685 302 HOH HOH . G 5 HOH A 86 686 329 HOH HOH . G 5 HOH A 87 687 49 HOH HOH . G 5 HOH A 88 688 75 HOH HOH . G 5 HOH A 89 689 266 HOH HOH . G 5 HOH A 90 690 13 HOH HOH . G 5 HOH A 91 691 44 HOH HOH . G 5 HOH A 92 692 248 HOH HOH . G 5 HOH A 93 693 74 HOH HOH . G 5 HOH A 94 694 1 HOH HOH . G 5 HOH A 95 695 41 HOH HOH . G 5 HOH A 96 696 18 HOH HOH . G 5 HOH A 97 697 311 HOH HOH . G 5 HOH A 98 698 323 HOH HOH . G 5 HOH A 99 699 184 HOH HOH . G 5 HOH A 100 700 5 HOH HOH . G 5 HOH A 101 701 22 HOH HOH . G 5 HOH A 102 702 67 HOH HOH . G 5 HOH A 103 703 43 HOH HOH . G 5 HOH A 104 704 11 HOH HOH . G 5 HOH A 105 705 193 HOH HOH . G 5 HOH A 106 706 128 HOH HOH . G 5 HOH A 107 707 29 HOH HOH . G 5 HOH A 108 708 247 HOH HOH . G 5 HOH A 109 709 66 HOH HOH . G 5 HOH A 110 710 316 HOH HOH . G 5 HOH A 111 711 300 HOH HOH . G 5 HOH A 112 712 268 HOH HOH . G 5 HOH A 113 713 96 HOH HOH . G 5 HOH A 114 714 30 HOH HOH . G 5 HOH A 115 715 285 HOH HOH . G 5 HOH A 116 716 58 HOH HOH . G 5 HOH A 117 717 120 HOH HOH . G 5 HOH A 118 718 233 HOH HOH . G 5 HOH A 119 719 40 HOH HOH . G 5 HOH A 120 720 50 HOH HOH . G 5 HOH A 121 721 166 HOH HOH . G 5 HOH A 122 722 343 HOH HOH . G 5 HOH A 123 723 105 HOH HOH . G 5 HOH A 124 724 115 HOH HOH . G 5 HOH A 125 725 124 HOH HOH . G 5 HOH A 126 726 267 HOH HOH . G 5 HOH A 127 727 16 HOH HOH . G 5 HOH A 128 728 71 HOH HOH . G 5 HOH A 129 729 25 HOH HOH . G 5 HOH A 130 730 53 HOH HOH . G 5 HOH A 131 731 37 HOH HOH . G 5 HOH A 132 732 270 HOH HOH . G 5 HOH A 133 733 337 HOH HOH . G 5 HOH A 134 734 106 HOH HOH . G 5 HOH A 135 735 27 HOH HOH . G 5 HOH A 136 736 46 HOH HOH . G 5 HOH A 137 737 122 HOH HOH . G 5 HOH A 138 738 199 HOH HOH . G 5 HOH A 139 739 64 HOH HOH . G 5 HOH A 140 740 146 HOH HOH . G 5 HOH A 141 741 301 HOH HOH . G 5 HOH A 142 742 144 HOH HOH . G 5 HOH A 143 743 260 HOH HOH . G 5 HOH A 144 744 9 HOH HOH . G 5 HOH A 145 745 42 HOH HOH . G 5 HOH A 146 746 103 HOH HOH . G 5 HOH A 147 747 292 HOH HOH . G 5 HOH A 148 748 136 HOH HOH . G 5 HOH A 149 749 280 HOH HOH . G 5 HOH A 150 750 295 HOH HOH . G 5 HOH A 151 751 10 HOH HOH . G 5 HOH A 152 752 219 HOH HOH . G 5 HOH A 153 753 296 HOH HOH . G 5 HOH A 154 754 289 HOH HOH . G 5 HOH A 155 755 4 HOH HOH . G 5 HOH A 156 756 12 HOH HOH . G 5 HOH A 157 757 241 HOH HOH . G 5 HOH A 158 758 52 HOH HOH . G 5 HOH A 159 759 235 HOH HOH . G 5 HOH A 160 760 70 HOH HOH . G 5 HOH A 161 761 79 HOH HOH . G 5 HOH A 162 762 245 HOH HOH . G 5 HOH A 163 763 138 HOH HOH . G 5 HOH A 164 764 17 HOH HOH . G 5 HOH A 165 765 32 HOH HOH . G 5 HOH A 166 766 14 HOH HOH . G 5 HOH A 167 767 341 HOH HOH . G 5 HOH A 168 768 110 HOH HOH . G 5 HOH A 169 769 28 HOH HOH . G 5 HOH A 170 770 305 HOH HOH . G 5 HOH A 171 771 149 HOH HOH . G 5 HOH A 172 772 127 HOH HOH . G 5 HOH A 173 773 251 HOH HOH . G 5 HOH A 174 774 287 HOH HOH . G 5 HOH A 175 775 229 HOH HOH . G 5 HOH A 176 776 83 HOH HOH . G 5 HOH A 177 777 290 HOH HOH . G 5 HOH A 178 778 281 HOH HOH . G 5 HOH A 179 779 312 HOH HOH . G 5 HOH A 180 780 308 HOH HOH . G 5 HOH A 181 781 177 HOH HOH . G 5 HOH A 182 782 283 HOH HOH . G 5 HOH A 183 783 86 HOH HOH . G 5 HOH A 184 784 134 HOH HOH . G 5 HOH A 185 785 258 HOH HOH . G 5 HOH A 186 786 45 HOH HOH . G 5 HOH A 187 787 51 HOH HOH . G 5 HOH A 188 788 210 HOH HOH . G 5 HOH A 189 789 108 HOH HOH . G 5 HOH A 190 790 242 HOH HOH . G 5 HOH A 191 791 23 HOH HOH . G 5 HOH A 192 792 286 HOH HOH . G 5 HOH A 193 793 167 HOH HOH . G 5 HOH A 194 794 112 HOH HOH . G 5 HOH A 195 795 162 HOH HOH . G 5 HOH A 196 796 331 HOH HOH . G 5 HOH A 197 797 93 HOH HOH . G 5 HOH A 198 798 336 HOH HOH . G 5 HOH A 199 799 6 HOH HOH . G 5 HOH A 200 800 282 HOH HOH . G 5 HOH A 201 801 306 HOH HOH . G 5 HOH A 202 802 77 HOH HOH . G 5 HOH A 203 803 237 HOH HOH . G 5 HOH A 204 804 273 HOH HOH . G 5 HOH A 205 805 116 HOH HOH . G 5 HOH A 206 806 65 HOH HOH . G 5 HOH A 207 807 226 HOH HOH . G 5 HOH A 208 808 330 HOH HOH . G 5 HOH A 209 809 218 HOH HOH . G 5 HOH A 210 810 236 HOH HOH . G 5 HOH A 211 811 203 HOH HOH . G 5 HOH A 212 812 187 HOH HOH . G 5 HOH A 213 813 47 HOH HOH . G 5 HOH A 214 814 276 HOH HOH . G 5 HOH A 215 815 332 HOH HOH . G 5 HOH A 216 816 98 HOH HOH . G 5 HOH A 217 817 225 HOH HOH . G 5 HOH A 218 818 334 HOH HOH . G 5 HOH A 219 819 54 HOH HOH . G 5 HOH A 220 820 264 HOH HOH . G 5 HOH A 221 821 288 HOH HOH . G 5 HOH A 222 822 224 HOH HOH . G 5 HOH A 223 823 160 HOH HOH . G 5 HOH A 224 824 227 HOH HOH . G 5 HOH A 225 825 221 HOH HOH . G 5 HOH A 226 826 8 HOH HOH . G 5 HOH A 227 827 204 HOH HOH . G 5 HOH A 228 828 97 HOH HOH . G 5 HOH A 229 829 181 HOH HOH . G 5 HOH A 230 830 222 HOH HOH . G 5 HOH A 231 831 216 HOH HOH . G 5 HOH A 232 832 234 HOH HOH . G 5 HOH A 233 833 200 HOH HOH . G 5 HOH A 234 834 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3PG . . . F 4 8.451 -5.4 12.453 1 42.82 ? C1 3PG 505 A 1 HETATM 2 O O1 3PG . . . F 4 8.551 -4.114 12.877 1 32.67 ? O1 3PG 505 A 1 HETATM 3 O O2 3PG . . . F 4 7.549 -6.119 12.887 1 51.81 ? O2 3PG 505 A 1 HETATM 4 C C2 3PG . . . F 4 9.321 -6.255 11.45 1 45.48 ? C2 3PG 505 A 1 HETATM 5 O O3 3PG . . . F 4 8.669 -7.335 10.641 1 39.69 ? O3 3PG 505 A 1 HETATM 6 C C3 3PG . . . F 4 10.555 -6.884 12.158 1 44.7 ? C3 3PG 505 A 1 HETATM 7 O O1P 3PG . . . F 4 10.71 -8.336 12.485 1 36.33 ? O1P 3PG 505 A 1 HETATM 8 P P 3PG . . . F 4 12.029 -8.682 13.412 1 34.13 ? P 3PG 505 A 1 HETATM 9 O O2P 3PG . . . F 4 13.298 -8.797 12.647 1 33.58 ? O2P 3PG 505 A 1 HETATM 10 O O3P 3PG . . . F 4 12.144 -7.416 14.226 1 33.67 ? O3P 3PG 505 A 1 HETATM 11 O O4P 3PG . . . F 4 11.655 -9.922 14.177 1 37.85 ? O4P 3PG 505 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #