data_5NPU # _model_server_result.job_id 9aO2ahJDPnQBFRt5OMv5hQ _model_server_result.datetime_utc '2024-10-19 10:26:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5npu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":603}' # _entry.id 5NPU # _exptl.entry_id 5NPU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5NPU _cell.length_a 108.33 _cell.length_b 108.33 _cell.length_c 322.651 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NPU _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 PISA monomeric 1 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,N 1 1 B,G,H 2 1 C,I,J,K 3 1 D,L,M 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 441 A ASP 441 1_555 E MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc2 A OD1 ASN 468 A ASN 468 1_555 E MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc3 E MG MG . A MG 601 1_555 F O1A TPP . A TPP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc4 E MG MG . A MG 601 1_555 F O1B TPP . A TPP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc5 E MG MG . A MG 601 1_555 F O2B TPP . A TPP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc6 B OD1 ASP 441 B ASP 441 1_555 G MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc7 B OD1 ASN 468 B ASN 468 1_555 G MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc8 B O GLY 470 B GLY 470 1_555 G MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc9 G MG MG . B MG 601 1_555 H O2A TPP . B TPP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc10 C OD1 ASP 441 C ASP 441 1_555 I MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc11 C OD1 ASN 468 C ASN 468 1_555 I MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc12 C O GLY 470 C GLY 470 1_555 I MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc13 I MG MG . C MG 601 1_555 J O1B TPP . C TPP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc14 I MG MG . C MG 601 1_555 J O1A TPP . C TPP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc15 D OD1 ASP 441 D ASP 441 1_555 L MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc16 D OD1 ASN 468 D ASN 468 1_555 L MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc17 D O GLY 470 D GLY 470 1_555 L MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc18 L MG MG . D MG 601 1_555 M O2B TPP . D TPP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc19 L MG MG . D MG 601 1_555 M O2A TPP . D TPP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 237 n n C1 C2 PEG sing 238 n n C1 H11 PEG sing 239 n n C1 H12 PEG sing 240 n n O1 HO1 PEG sing 241 n n C2 O2 PEG sing 242 n n C2 H21 PEG sing 243 n n C2 H22 PEG sing 244 n n O2 C3 PEG sing 245 n n C3 C4 PEG sing 246 n n C3 H31 PEG sing 247 n n C3 H32 PEG sing 248 n n C4 O4 PEG sing 249 n n C4 H41 PEG sing 250 n n C4 H42 PEG sing 251 n n O4 HO4 PEG sing 252 n n # _atom_sites.entry_id 5NPU _atom_sites.fract_transf_matrix[1][1] 0.009231 _atom_sites.fract_transf_matrix[1][2] 0.00533 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010659 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 601 601 MG MG . F 3 TPP A 1 602 602 TPP TPP . G 2 MG B 1 601 601 MG MG . H 3 TPP B 1 602 602 TPP TPP . I 2 MG C 1 601 601 MG MG . J 3 TPP C 1 602 602 TPP TPP . K 4 PEG C 1 603 1 PEG PEG . L 2 MG D 1 601 601 MG MG . M 3 TPP D 1 602 602 TPP TPP . N 5 HOH A 1 701 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . K 4 27.176 -59.676 -32.516 1 59.98 ? C1 PEG 603 C 1 HETATM 2 O O1 PEG . . . K 4 28.11 -60.718 -32.468 1 61.02 ? O1 PEG 603 C 1 HETATM 3 C C2 PEG . . . K 4 27.903 -58.337 -32.601 1 59.03 ? C2 PEG 603 C 1 HETATM 4 O O2 PEG . . . K 4 28.738 -58.197 -31.481 1 59.16 ? O2 PEG 603 C 1 HETATM 5 C C3 PEG . . . K 4 29.814 -57.31 -31.656 1 58.74 ? C3 PEG 603 C 1 HETATM 6 C C4 PEG . . . K 4 30.601 -57.127 -30.346 1 58.95 ? C4 PEG 603 C 1 HETATM 7 O O4 PEG . . . K 4 31.581 -58.12 -30.153 1 59.99 ? O4 PEG 603 C 1 HETATM 8 H H11 PEG . . . K 4 26.61 -59.786 -33.296 1 71.97 ? H11 PEG 603 C 1 HETATM 9 H H12 PEG . . . K 4 26.629 -59.696 -31.715 1 71.97 ? H12 PEG 603 C 1 HETATM 10 H HO1 PEG . . . K 4 27.753 -61.432 -32.759 1 73.22 ? HO1 PEG 603 C 1 HETATM 11 H H21 PEG . . . K 4 28.437 -58.308 -33.41 1 70.84 ? H21 PEG 603 C 1 HETATM 12 H H22 PEG . . . K 4 27.254 -57.615 -32.614 1 70.84 ? H22 PEG 603 C 1 HETATM 13 H H31 PEG . . . K 4 30.409 -57.662 -32.337 1 70.49 ? H31 PEG 603 C 1 HETATM 14 H H32 PEG . . . K 4 29.473 -56.449 -31.945 1 70.49 ? H32 PEG 603 C 1 HETATM 15 H H41 PEG . . . K 4 31.034 -56.259 -30.361 1 70.74 ? H41 PEG 603 C 1 HETATM 16 H H42 PEG . . . K 4 29.979 -57.153 -29.602 1 70.74 ? H42 PEG 603 C 1 HETATM 17 H HO4 PEG . . . K 4 32.333 -57.831 -30.424 1 71.99 ? HO4 PEG 603 C 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #