data_5NQM # _model_server_result.job_id AgoBbMfwK5ASojerkBNf1A _model_server_result.datetime_utc '2024-11-05 00:53:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nqm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":215}' # _entry.id 5NQM # _exptl.entry_id 5NQM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NQM _cell.length_a 44.65 _cell.length_b 106.68 _cell.length_c 45.62 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NQM _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 44.65 0 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 44.65 0 45.62 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 45.62 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 58 A ASN 58 1_555 D CU CU1 . A CU1 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc2 A O ARG 74 A ARG 74 1_555 F NA NA . A NA 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc3 A OE2 GLU 79 A GLU 79 1_555 F NA NA . A NA 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 A SG CYS 97 A CYS 97 1_555 B CU CU1 . A CU1 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc5 A O CYS 97 A CYS 97 1_555 E CU CU1 . A CU1 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc6 A SG CYS 97 A CYS 97 1_555 E CU CU1 . A CU1 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc7 A SG CYS 101 A CYS 101 1_555 D CU CU1 . A CU1 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc8 A SG CYS 101 A CYS 101 1_555 E CU CU1 . A CU1 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc9 A O CYS 114 A CYS 114 1_555 C CU CU1 . A CU1 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc10 A SG CYS 114 A CYS 114 1_555 C CU CU1 . A CU1 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc11 A SG CYS 114 A CYS 114 1_555 D CU CU1 . A CU1 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc12 A SG CYS 118 A CYS 118 1_555 B CU CU1 . A CU1 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc13 A SG CYS 118 A CYS 118 1_555 C CU CU1 . A CU1 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc14 B CU CU1 . A CU1 211 1_555 C CU CU1 . A CU1 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc15 B CU CU1 . A CU1 211 1_555 E CU CU1 . A CU1 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc16 C CU CU1 . A CU1 212 1_555 D CU CU1 . A CU1 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc17 D CU CU1 . A CU1 213 1_555 E CU CU1 . A CU1 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc18 F NA NA . A NA 215 1_555 G O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc19 F NA NA . A NA 215 1_555 G O HOH . A HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc20 F NA NA . A NA 215 1_555 G O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc21 F NA NA . A NA 215 1_555 G O HOH . A HOH 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NQM _atom_sites.fract_transf_matrix[1][1] 0.022396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009374 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU1 A 1 211 11 CU1 CU1 . C 2 CU1 A 1 212 12 CU1 CU1 . D 2 CU1 A 1 213 13 CU1 CU1 . E 2 CU1 A 1 214 14 CU1 CU1 . F 3 NA A 1 215 1 NA NA . G 4 HOH A 1 301 2 HOH HOH . G 4 HOH A 2 302 29 HOH HOH . G 4 HOH A 3 303 19 HOH HOH . G 4 HOH A 4 304 28 HOH HOH . G 4 HOH A 5 305 11 HOH HOH . G 4 HOH A 6 306 14 HOH HOH . G 4 HOH A 7 307 1 HOH HOH . G 4 HOH A 8 308 26 HOH HOH . G 4 HOH A 9 309 30 HOH HOH . G 4 HOH A 10 310 5 HOH HOH . G 4 HOH A 11 311 6 HOH HOH . G 4 HOH A 12 312 20 HOH HOH . G 4 HOH A 13 313 25 HOH HOH . G 4 HOH A 14 314 13 HOH HOH . G 4 HOH A 15 315 15 HOH HOH . G 4 HOH A 16 316 21 HOH HOH . G 4 HOH A 17 317 7 HOH HOH . G 4 HOH A 18 318 40 HOH HOH . G 4 HOH A 19 319 35 HOH HOH . G 4 HOH A 20 320 10 HOH HOH . G 4 HOH A 21 321 27 HOH HOH . G 4 HOH A 22 322 8 HOH HOH . G 4 HOH A 23 323 18 HOH HOH . G 4 HOH A 24 324 31 HOH HOH . G 4 HOH A 25 325 12 HOH HOH . G 4 HOH A 26 326 22 HOH HOH . G 4 HOH A 27 327 23 HOH HOH . G 4 HOH A 28 328 3 HOH HOH . G 4 HOH A 29 329 38 HOH HOH . G 4 HOH A 30 330 32 HOH HOH . G 4 HOH A 31 331 39 HOH HOH . G 4 HOH A 32 332 33 HOH HOH . G 4 HOH A 33 333 24 HOH HOH . G 4 HOH A 34 334 16 HOH HOH . G 4 HOH A 35 335 17 HOH HOH . G 4 HOH A 36 336 9 HOH HOH . G 4 HOH A 37 337 37 HOH HOH . G 4 HOH A 38 338 34 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 12.91 _atom_site.Cartn_y -15.011 _atom_site.Cartn_z 17.427 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 215 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #