data_5NQR
#
_model_server_result.job_id            H5IoM4hQiI_sMSYaO4Potw 
_model_server_result.datetime_utc      '2024-11-21 17:12:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nqr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":303}' 
#
_entry.id    5NQR 
#
_exptl.entry_id    5NQR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              395.415 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            8-(dimethylamino)-1,3-dimethyl-7-[[5-(3-methylphenyl)-1,3,4-oxadiazol-2-yl]methyl]purine-2,6-dione 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          122.22 
_cell.angle_gamma         90 
_cell.entry_id            5NQR 
_cell.length_a            111.599 
_cell.length_b            39.303 
_cell.length_c            98.723 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NQR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C19 H21 N7 O3' 
_chem_comp.formula_weight    395.415 
_chem_comp.id                958 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              8-(dimethylamino)-1,3-dimethyl-7-[[5-(3-methylphenyl)-1,3,4-oxadiazol-2-yl]methyl]purine-2,6-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     TH5427 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAS CAR 958 doub 1 n y 
CAS CAT 958 sing 2 n y 
CAR CAQ 958 sing 3 n y 
CAV CAT 958 sing 4 n n 
CAT CAU 958 doub 5 n y 
CAQ CAP 958 doub 6 n y 
CAU CAP 958 sing 7 n y 
CAP CAN 958 sing 8 n n 
CAN NAM 958 doub 9 n y 
CAN OAO 958 sing 10 n y 
NAM NAL 958 sing 11 n y 
OAO CAK 958 sing 12 n y 
CBB NBA 958 sing 13 n n 
NAL CAK 958 doub 14 n y 
CAK CAJ 958 sing 15 n n 
CAJ N7 958 sing 16 n n 
NBA CBC 958 sing 17 n n 
NBA C8 958 sing 18 n n 
N7 C8 958 sing 19 n y 
N7 C5 958 sing 20 n y 
C8 N9 958 doub 21 n y 
O6 C6 958 doub 22 n n 
C5 C6 958 sing 23 n n 
C5 C4 958 doub 24 n y 
N9 C4 958 sing 25 n y 
C6 N1 958 sing 26 n n 
C4 N3 958 sing 27 n n 
N1 CAY 958 sing 28 n n 
N1 C2 958 sing 29 n n 
N3 C2 958 sing 30 n n 
N3 CAW 958 sing 31 n n 
C2 O2 958 doub 32 n n 
CAV H1 958 sing 33 n n 
CAV H2 958 sing 34 n n 
CAV H3 958 sing 35 n n 
CAU H4 958 sing 36 n n 
CAS H5 958 sing 37 n n 
CAR H6 958 sing 38 n n 
CAQ H7 958 sing 39 n n 
CAJ H8 958 sing 40 n n 
CAJ H9 958 sing 41 n n 
CAY H10 958 sing 42 n n 
CAY H11 958 sing 43 n n 
CAY H12 958 sing 44 n n 
CAW H13 958 sing 45 n n 
CAW H14 958 sing 46 n n 
CAW H15 958 sing 47 n n 
CBC H16 958 sing 48 n n 
CBC H17 958 sing 49 n n 
CBC H18 958 sing 50 n n 
CBB H19 958 sing 51 n n 
CBB H20 958 sing 52 n n 
CBB H21 958 sing 53 n n 
#
_atom_sites.entry_id                     5NQR 
_atom_sites.fract_transf_matrix[1][1]    0.008961 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005646 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025443 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011972 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 958 A 1 301 209 958 DRG . 
D 2 958 A 1 302 210 958 DRG . 
E 2 958 A 1 303 209 958 DRG . 
F 3 HOH A 1 401 290 HOH HOH . 
F 3 HOH A 2 402 259 HOH HOH . 
F 3 HOH A 3 403 241 HOH HOH . 
F 3 HOH A 4 404 271 HOH HOH . 
F 3 HOH A 5 405 272 HOH HOH . 
F 3 HOH A 6 406 232 HOH HOH . 
F 3 HOH A 7 407 283 HOH HOH . 
F 3 HOH A 8 408 264 HOH HOH . 
F 3 HOH A 9 409 242 HOH HOH . 
F 3 HOH A 10 410 240 HOH HOH . 
F 3 HOH A 11 411 277 HOH HOH . 
F 3 HOH A 12 412 254 HOH HOH . 
F 3 HOH A 13 413 224 HOH HOH . 
F 3 HOH A 14 414 262 HOH HOH . 
F 3 HOH A 15 415 214 HOH HOH . 
F 3 HOH A 16 416 235 HOH HOH . 
F 3 HOH A 17 417 276 HOH HOH . 
F 3 HOH A 18 418 288 HOH HOH . 
F 3 HOH A 19 419 230 HOH HOH . 
F 3 HOH A 20 420 252 HOH HOH . 
F 3 HOH A 21 421 289 HOH HOH . 
F 3 HOH A 22 422 225 HOH HOH . 
F 3 HOH A 23 423 244 HOH HOH . 
F 3 HOH A 24 424 213 HOH HOH . 
F 3 HOH A 25 425 248 HOH HOH . 
F 3 HOH A 26 426 211 HOH HOH . 
F 3 HOH A 27 427 233 HOH HOH . 
F 3 HOH A 28 428 286 HOH HOH . 
F 3 HOH A 29 429 220 HOH HOH . 
F 3 HOH A 30 430 221 HOH HOH . 
F 3 HOH A 31 431 246 HOH HOH . 
F 3 HOH A 32 432 216 HOH HOH . 
F 3 HOH A 33 433 238 HOH HOH . 
F 3 HOH A 34 434 229 HOH HOH . 
F 3 HOH A 35 435 219 HOH HOH . 
F 3 HOH A 36 436 232 HOH HOH . 
F 3 HOH A 37 437 228 HOH HOH . 
F 3 HOH A 38 438 239 HOH HOH . 
F 3 HOH A 39 439 212 HOH HOH . 
F 3 HOH A 40 440 245 HOH HOH . 
F 3 HOH A 41 441 223 HOH HOH . 
F 3 HOH A 42 442 217 HOH HOH . 
F 3 HOH A 43 443 226 HOH HOH . 
F 3 HOH A 44 444 256 HOH HOH . 
F 3 HOH A 45 445 270 HOH HOH . 
F 3 HOH A 46 446 251 HOH HOH . 
F 3 HOH A 47 447 285 HOH HOH . 
F 3 HOH A 48 448 287 HOH HOH . 
F 3 HOH A 49 449 250 HOH HOH . 
F 3 HOH A 50 450 215 HOH HOH . 
F 3 HOH A 51 451 260 HOH HOH . 
F 3 HOH A 52 452 249 HOH HOH . 
F 3 HOH A 53 453 234 HOH HOH . 
F 3 HOH A 54 454 247 HOH HOH . 
F 3 HOH A 55 455 267 HOH HOH . 
F 3 HOH A 56 456 278 HOH HOH . 
F 3 HOH A 57 457 218 HOH HOH . 
F 3 HOH A 58 458 222 HOH HOH . 
F 3 HOH A 59 459 231 HOH HOH . 
F 3 HOH A 60 460 266 HOH HOH . 
F 3 HOH A 61 461 236 HOH HOH . 
F 3 HOH A 62 462 268 HOH HOH . 
F 3 HOH A 63 463 253 HOH HOH . 
F 3 HOH A 64 464 275 HOH HOH . 
F 3 HOH A 65 465 284 HOH HOH . 
F 3 HOH A 66 466 269 HOH HOH . 
F 3 HOH A 67 467 265 HOH HOH . 
F 3 HOH A 68 468 255 HOH HOH . 
F 3 HOH A 69 469 282 HOH HOH . 
F 3 HOH A 70 470 263 HOH HOH . 
F 3 HOH A 71 471 280 HOH HOH . 
F 3 HOH A 72 472 257 HOH HOH . 
F 3 HOH A 73 473 237 HOH HOH . 
F 3 HOH A 74 474 261 HOH HOH . 
F 3 HOH A 75 475 274 HOH HOH . 
F 3 HOH A 76 476 273 HOH HOH . 
F 3 HOH A 77 477 279 HOH HOH . 
F 3 HOH A 78 478 243 HOH HOH . 
F 3 HOH A 79 479 227 HOH HOH . 
F 3 HOH A 80 480 281 HOH HOH . 
G 3 HOH B 1 301 301 HOH HOH . 
G 3 HOH B 2 302 292 HOH HOH . 
G 3 HOH B 3 303 261 HOH HOH . 
G 3 HOH B 4 304 228 HOH HOH . 
G 3 HOH B 5 305 303 HOH HOH . 
G 3 HOH B 6 306 262 HOH HOH . 
G 3 HOH B 7 307 275 HOH HOH . 
G 3 HOH B 8 308 243 HOH HOH . 
G 3 HOH B 9 309 257 HOH HOH . 
G 3 HOH B 10 310 226 HOH HOH . 
G 3 HOH B 11 311 302 HOH HOH . 
G 3 HOH B 12 312 251 HOH HOH . 
G 3 HOH B 13 313 222 HOH HOH . 
G 3 HOH B 14 314 252 HOH HOH . 
G 3 HOH B 15 315 240 HOH HOH . 
G 3 HOH B 16 316 216 HOH HOH . 
G 3 HOH B 17 317 265 HOH HOH . 
G 3 HOH B 18 318 300 HOH HOH . 
G 3 HOH B 19 319 263 HOH HOH . 
G 3 HOH B 20 320 217 HOH HOH . 
G 3 HOH B 21 321 244 HOH HOH . 
G 3 HOH B 22 322 229 HOH HOH . 
G 3 HOH B 23 323 238 HOH HOH . 
G 3 HOH B 24 324 277 HOH HOH . 
G 3 HOH B 25 325 218 HOH HOH . 
G 3 HOH B 26 326 248 HOH HOH . 
G 3 HOH B 27 327 213 HOH HOH . 
G 3 HOH B 28 328 231 HOH HOH . 
G 3 HOH B 29 329 268 HOH HOH . 
G 3 HOH B 30 330 225 HOH HOH . 
G 3 HOH B 31 331 245 HOH HOH . 
G 3 HOH B 32 332 294 HOH HOH . 
G 3 HOH B 33 333 235 HOH HOH . 
G 3 HOH B 34 334 215 HOH HOH . 
G 3 HOH B 35 335 224 HOH HOH . 
G 3 HOH B 36 336 242 HOH HOH . 
G 3 HOH B 37 337 211 HOH HOH . 
G 3 HOH B 38 338 221 HOH HOH . 
G 3 HOH B 39 339 254 HOH HOH . 
G 3 HOH B 40 340 272 HOH HOH . 
G 3 HOH B 41 341 278 HOH HOH . 
G 3 HOH B 42 342 249 HOH HOH . 
G 3 HOH B 43 343 212 HOH HOH . 
G 3 HOH B 44 344 214 HOH HOH . 
G 3 HOH B 45 345 270 HOH HOH . 
G 3 HOH B 46 346 290 HOH HOH . 
G 3 HOH B 47 347 233 HOH HOH . 
G 3 HOH B 48 348 227 HOH HOH . 
G 3 HOH B 49 349 210 HOH HOH . 
G 3 HOH B 50 350 253 HOH HOH . 
G 3 HOH B 51 351 220 HOH HOH . 
G 3 HOH B 52 352 237 HOH HOH . 
G 3 HOH B 53 353 223 HOH HOH . 
G 3 HOH B 54 354 279 HOH HOH . 
G 3 HOH B 55 355 289 HOH HOH . 
G 3 HOH B 56 356 293 HOH HOH . 
G 3 HOH B 57 357 230 HOH HOH . 
G 3 HOH B 58 358 286 HOH HOH . 
G 3 HOH B 59 359 219 HOH HOH . 
G 3 HOH B 60 360 287 HOH HOH . 
G 3 HOH B 61 361 267 HOH HOH . 
G 3 HOH B 62 362 239 HOH HOH . 
G 3 HOH B 63 363 250 HOH HOH . 
G 3 HOH B 64 364 260 HOH HOH . 
G 3 HOH B 65 365 266 HOH HOH . 
G 3 HOH B 66 366 255 HOH HOH . 
G 3 HOH B 67 367 269 HOH HOH . 
G 3 HOH B 68 368 283 HOH HOH . 
G 3 HOH B 69 369 298 HOH HOH . 
G 3 HOH B 70 370 284 HOH HOH . 
G 3 HOH B 71 371 241 HOH HOH . 
G 3 HOH B 72 372 291 HOH HOH . 
G 3 HOH B 73 373 258 HOH HOH . 
G 3 HOH B 74 374 288 HOH HOH . 
G 3 HOH B 75 375 234 HOH HOH . 
G 3 HOH B 76 376 264 HOH HOH . 
G 3 HOH B 77 377 297 HOH HOH . 
G 3 HOH B 78 378 273 HOH HOH . 
G 3 HOH B 79 379 246 HOH HOH . 
G 3 HOH B 80 380 299 HOH HOH . 
G 3 HOH B 81 381 281 HOH HOH . 
G 3 HOH B 82 382 236 HOH HOH . 
G 3 HOH B 83 383 296 HOH HOH . 
G 3 HOH B 84 384 258 HOH HOH . 
G 3 HOH B 85 385 280 HOH HOH . 
G 3 HOH B 86 386 271 HOH HOH . 
G 3 HOH B 87 387 282 HOH HOH . 
G 3 HOH B 88 388 276 HOH HOH . 
G 3 HOH B 89 389 259 HOH HOH . 
G 3 HOH B 90 390 256 HOH HOH . 
G 3 HOH B 91 391 285 HOH HOH . 
G 3 HOH B 92 392 247 HOH HOH . 
G 3 HOH B 93 393 274 HOH HOH . 
G 3 HOH B 94 394 295 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 958 . . . E 2 62.408 20.785 118.231 1 46.41 ? C4 958 303 A 1 
HETATM 2 C C5 958 . . . E 2 62.736 19.63 117.644 1 48.16 ? C5 958 303 A 1 
HETATM 3 C C6 958 . . . E 2 64.04 19.375 117.434 1 47.89 ? C6 958 303 A 1 
HETATM 4 C C8 958 . . . E 2 60.583 19.723 117.851 1 46.98 ? C8 958 303 A 1 
HETATM 5 N N1 958 . . . E 2 64.979 20.263 117.807 1 41.9 ? N1 958 303 A 1 
HETATM 6 N N3 958 . . . E 2 63.339 21.672 118.603 1 38.42 ? N3 958 303 A 1 
HETATM 7 C CAV 958 . . . E 2 64.88 12.196 113.201 1 43.63 ? CAV 958 303 A 1 
HETATM 8 C CAT 958 . . . E 2 64.291 13.314 112.642 1 50.32 ? CAT 958 303 A 1 
HETATM 9 C CAU 958 . . . E 2 63.716 14.28 113.459 1 50.14 ? CAU 958 303 A 1 
HETATM 10 C CAS 958 . . . E 2 64.275 13.458 111.262 1 51.82 ? CAS 958 303 A 1 
HETATM 11 C CAR 958 . . . E 2 63.687 14.578 110.69 1 56.06 ? CAR 958 303 A 1 
HETATM 12 C CAQ 958 . . . E 2 63.116 15.548 111.504 1 56.59 ? CAQ 958 303 A 1 
HETATM 13 C CAP 958 . . . E 2 63.139 15.407 112.885 1 53.54 ? CAP 958 303 A 1 
HETATM 14 C CAN 958 . . . E 2 62.579 16.333 113.657 1 54.9 ? CAN 958 303 A 1 
HETATM 15 O OAO 958 . . . E 2 62.476 16.226 114.917 1 51.2 ? OAO 958 303 A 1 
HETATM 16 N NAM 958 . . . E 2 62.015 17.468 113.24 1 57.17 ? NAM 958 303 A 1 
HETATM 17 N NAL 958 . . . E 2 61.586 18.073 114.233 1 46.52 ? NAL 958 303 A 1 
HETATM 18 C CAK 958 . . . E 2 61.876 17.324 115.292 1 38.16 ? CAK 958 303 A 1 
HETATM 19 C CAJ 958 . . . E 2 61.543 17.577 116.756 1 42.86 ? CAJ 958 303 A 1 
HETATM 20 N N7 958 . . . E 2 61.592 18.967 117.36 1 50.49 ? N7 958 303 A 1 
HETATM 21 O O6 958 . . . E 2 64.425 18.334 116.9 1 44.44 ? O6 958 303 A 1 
HETATM 22 C CAY 958 . . . E 2 66.411 19.972 117.567 1 40.54 ? CAY 958 303 A 1 
HETATM 23 C C2 958 . . . E 2 64.631 21.414 118.393 1 44.68 ? C2 958 303 A 1 
HETATM 24 O O2 958 . . . E 2 65.489 22.228 118.734 1 39.4 ? O2 958 303 A 1 
HETATM 25 C CAW 958 . . . E 2 62.93 22.937 119.256 1 42.2 ? CAW 958 303 A 1 
HETATM 26 N N9 958 . . . E 2 61.092 20.84 118.343 1 45.45 ? N9 958 303 A 1 
HETATM 27 N NBA 958 . . . E 2 59.236 19.598 117.845 1 50 ? NBA 958 303 A 1 
HETATM 28 C CBC 958 . . . E 2 58.484 20.637 118.56 1 49.83 ? CBC 958 303 A 1 
HETATM 29 C CBB 958 . . . E 2 58.511 18.471 117.23 1 53.95 ? CBB 958 303 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           29 
#