data_5NR2 # _model_server_result.job_id VrwJ1_Yd6pQcyYXyd5zbfw _model_server_result.datetime_utc '2024-10-28 02:41:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nr2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 5NR2 # _exptl.entry_id 5NR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.397 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Azotochelin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NR2 _cell.length_a 86.64 _cell.length_b 158.08 _cell.length_c 78.99 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 487 A CYS 484 1_555 A SG CYS 494 A CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 B FE FE . A FE 801 1_555 C OAF 95B . A 95B 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc2 B FE FE . A FE 801 1_555 C OAE 95B . A 95B 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc3 B FE FE . A FE 801 1_555 C OAH 95B . A 95B 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc4 B FE FE . A FE 801 1_555 C OAG 95B . A 95B 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc5 B FE FE . A FE 801 1_555 D O1 EDO . A EDO 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc6 B FE FE . A FE 801 1_555 D O2 EDO . A EDO 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? # _chem_comp.formula 'C20 H22 N2 O8' _chem_comp.formula_weight 418.397 _chem_comp.id 95B _chem_comp.mon_nstd_flag . _chem_comp.name Azotochelin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OXT C 95B doub 1 n n O C 95B sing 2 n n C CA 95B sing 3 n n CAJ CAL 95B doub 4 n y CAJ CAN 95B sing 5 n y CAL CAY 95B sing 6 n y CAN CBC 95B doub 7 n y CAY OAF 95B sing 8 n n CAY CBA 95B doub 9 n y OAC CAW 95B doub 10 n n CBC CBA 95B sing 11 n y CBC CAW 95B sing 12 n n CBA OAH 95B sing 13 n n CAW N 95B sing 14 n n N CA 95B sing 15 n n CA CB 95B sing 16 n n CAP CB 95B sing 17 n n CAP CAO 95B sing 18 n n OAG CAZ 95B sing 19 n n OAE CAX 95B sing 20 n n CAQ NAS 95B sing 21 n n CAQ CAO 95B sing 22 n n NAS CAV 95B sing 23 n n CAZ CAX 95B doub 24 n y CAZ CBB 95B sing 25 n y CAX CAK 95B sing 26 n y CAV CBB 95B sing 27 n n CAV OAB 95B doub 28 n n CBB CAM 95B doub 29 n y CAK CAI 95B doub 30 n y CAM CAI 95B sing 31 n y OAH H1 95B sing 32 n n OAF H2 95B sing 33 n n CAL H3 95B sing 34 n n CAJ H4 95B sing 35 n n CAN H5 95B sing 36 n n N H6 95B sing 37 n n CA H7 95B sing 38 n n O H8 95B sing 39 n n CB H9 95B sing 40 n n CB H10 95B sing 41 n n CAP H11 95B sing 42 n n CAP H12 95B sing 43 n n CAO H13 95B sing 44 n n CAO H14 95B sing 45 n n CAQ H15 95B sing 46 n n CAQ H16 95B sing 47 n n NAS H17 95B sing 48 n n CAM H18 95B sing 49 n n CAI H19 95B sing 50 n n CAK H20 95B sing 51 n n OAE H21 95B sing 52 n n OAG H22 95B sing 53 n n # _atom_sites.entry_id 5NR2 _atom_sites.fract_transf_matrix[1][1] 0.011542 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006326 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 801 1 FE FE . C 3 95B A 1 802 1 95B BC9 . D 4 EDO A 1 803 1 EDO EDO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAH 95B . . . C 3 0.504 32.864 -47.47 1 76.88 ? OAH 95B 802 A 1 HETATM 2 C CBA 95B . . . C 3 -0.188 34.016 -47.705 1 80.47 ? CBA 95B 802 A 1 HETATM 3 C CAY 95B . . . C 3 -1.578 33.957 -47.86 1 79.01 ? CAY 95B 802 A 1 HETATM 4 O OAF 95B . . . C 3 -2.198 32.747 -47.79 1 67.34 ? OAF 95B 802 A 1 HETATM 5 C CAL 95B . . . C 3 -2.3 35.124 -48.074 1 95.55 ? CAL 95B 802 A 1 HETATM 6 C CAJ 95B . . . C 3 -1.626 36.342 -48.135 1 94.86 ? CAJ 95B 802 A 1 HETATM 7 C CAN 95B . . . C 3 -0.236 36.397 -47.991 1 92.91 ? CAN 95B 802 A 1 HETATM 8 C CBC 95B . . . C 3 0.508 35.236 -47.77 1 87.91 ? CBC 95B 802 A 1 HETATM 9 C CAW 95B . . . C 3 1.896 35.354 -47.61 1 91.93 ? CAW 95B 802 A 1 HETATM 10 O OAC 95B . . . C 3 2.478 36.411 -47.851 1 97.56 ? OAC 95B 802 A 1 HETATM 11 N N 95B . . . C 3 2.541 34.29 -47.124 1 96.47 ? N 95B 802 A 1 HETATM 12 C CA 95B . . . C 3 3.999 34.335 -46.967 1 97.84 ? CA 95B 802 A 1 HETATM 13 C C 95B . . . C 3 4.591 34.174 -48.372 1 110.28 ? C 95B 802 A 1 HETATM 14 O OXT 95B . . . C 3 3.802 34.379 -49.325 1 99.48 ? OXT 95B 802 A 1 HETATM 15 O O 95B . . . C 3 5.789 33.817 -48.462 1 106.46 ? O 95B 802 A 1 HETATM 16 C CB 95B . . . C 3 4.482 33.22 -46.021 1 89.14 ? CB 95B 802 A 1 HETATM 17 C CAP 95B . . . C 3 4.166 31.819 -46.587 1 77.53 ? CAP 95B 802 A 1 HETATM 18 C CAO 95B . . . C 3 4.524 30.784 -45.511 1 85.96 ? CAO 95B 802 A 1 HETATM 19 C CAQ 95B . . . C 3 4.083 29.379 -45.922 1 89.62 ? CAQ 95B 802 A 1 HETATM 20 N NAS 95B . . . C 3 2.655 29.253 -45.636 1 95.06 ? NAS 95B 802 A 1 HETATM 21 C CAV 95B . . . C 3 2.197 29.137 -44.392 1 89.51 ? CAV 95B 802 A 1 HETATM 22 O OAB 95B . . . C 3 2.949 29.059 -43.418 1 84.13 ? OAB 95B 802 A 1 HETATM 23 C CBB 95B . . . C 3 0.796 29.117 -44.268 1 108.36 ? CBB 95B 802 A 1 HETATM 24 C CAM 95B . . . C 3 0.197 28.543 -43.141 1 101.78 ? CAM 95B 802 A 1 HETATM 25 C CAI 95B . . . C 3 -1.198 28.523 -43.009 1 94.59 ? CAI 95B 802 A 1 HETATM 26 C CAK 95B . . . C 3 -2.023 29.085 -43.985 1 91.27 ? CAK 95B 802 A 1 HETATM 27 C CAX 95B . . . C 3 -1.447 29.671 -45.109 1 105.19 ? CAX 95B 802 A 1 HETATM 28 O OAE 95B . . . C 3 -2.184 30.245 -46.119 1 92.27 ? OAE 95B 802 A 1 HETATM 29 C CAZ 95B . . . C 3 -0.054 29.69 -45.236 1 110.59 ? CAZ 95B 802 A 1 HETATM 30 O OAG 95B . . . C 3 0.48 30.279 -46.356 1 102.04 ? OAG 95B 802 A 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #