data_5NR7 # _model_server_result.job_id 876OHaaKkdTnyoLvCbjgeA _model_server_result.datetime_utc '2024-11-14 18:32:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nr7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5NR7 # _exptl.entry_id 5NR7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 476.955 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[1-[[4-(3-chloranylphenoxy)quinolin-2-yl]methyl]piperidin-4-yl]-5-methyl-pyrimidine-2,4-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5NR7 _cell.length_a 73.63 _cell.length_b 73.63 _cell.length_c 72.86 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NR7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C26 H25 Cl N4 O3' _chem_comp.formula_weight 476.955 _chem_comp.id YUI _chem_comp.mon_nstd_flag . _chem_comp.name 1-[1-[[4-(3-chloranylphenoxy)quinolin-2-yl]methyl]piperidin-4-yl]-5-methyl-pyrimidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C25 YUI doub 376 n n C25 N3 YUI sing 377 n n C25 C1 YUI sing 378 n n N3 C24 YUI sing 379 n n C C1 YUI sing 380 n n C1 C2 YUI doub 381 n n C24 O1 YUI doub 382 n n C24 N YUI sing 383 n n C2 N YUI sing 384 n n N C3 YUI sing 385 n n C4 C3 YUI sing 386 n n C4 C5 YUI sing 387 n n C3 C23 YUI sing 388 n n C5 N1 YUI sing 389 n n C23 C22 YUI sing 390 n n N1 C22 YUI sing 391 n n N1 C6 YUI sing 392 n n C6 C7 YUI sing 393 n n C7 N2 YUI doub 394 n y C7 C8 YUI sing 395 n y N2 C21 YUI sing 396 n y C8 C9 YUI doub 397 n y C21 C20 YUI doub 398 n y C21 C16 YUI sing 399 n y C20 C19 YUI sing 400 n y C9 C16 YUI sing 401 n y C9 O YUI sing 402 n n C11 C12 YUI doub 403 n y C11 C10 YUI sing 404 n y C12 C13 YUI sing 405 n y C16 C17 YUI doub 406 n y O C10 YUI sing 407 n n C10 C15 YUI doub 408 n y C19 C18 YUI doub 409 n y C13 C14 YUI doub 410 n y C17 C18 YUI sing 411 n y C15 C14 YUI sing 412 n y C14 CL YUI sing 413 n n C H2 YUI sing 414 n n C H1 YUI sing 415 n n C H3 YUI sing 416 n n N3 H YUI sing 417 n n C2 H4 YUI sing 418 n n C3 H5 YUI sing 419 n n C23 H24 YUI sing 420 n n C23 H23 YUI sing 421 n n C22 H21 YUI sing 422 n n C22 H22 YUI sing 423 n n C5 H9 YUI sing 424 n n C5 H8 YUI sing 425 n n C4 H7 YUI sing 426 n n C4 H6 YUI sing 427 n n C6 H11 YUI sing 428 n n C6 H10 YUI sing 429 n n C20 H20 YUI sing 430 n n C19 H19 YUI sing 431 n n C18 H18 YUI sing 432 n n C17 H17 YUI sing 433 n n C8 H12 YUI sing 434 n n C15 H16 YUI sing 435 n n C13 H15 YUI sing 436 n n C12 H14 YUI sing 437 n n C11 H13 YUI sing 438 n n # _atom_sites.entry_id 5NR7 _atom_sites.fract_transf_matrix[1][1] 0.013581 _atom_sites.fract_transf_matrix[1][2] 0.007841 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 YUI A 1 301 1 YUI YUI . D 3 CL A 1 302 1 CL CL . E 2 YUI B 1 301 2 YUI YUI . F 3 CL B 1 302 2 CL CL . G 4 HOH A 1 401 26 HOH HOH . G 4 HOH A 2 402 74 HOH HOH . G 4 HOH A 3 403 75 HOH HOH . G 4 HOH A 4 404 7 HOH HOH . G 4 HOH A 5 405 43 HOH HOH . G 4 HOH A 6 406 87 HOH HOH . G 4 HOH A 7 407 72 HOH HOH . G 4 HOH A 8 408 71 HOH HOH . G 4 HOH A 9 409 56 HOH HOH . G 4 HOH A 10 410 35 HOH HOH . G 4 HOH A 11 411 15 HOH HOH . G 4 HOH A 12 412 1 HOH HOH . G 4 HOH A 13 413 21 HOH HOH . G 4 HOH A 14 414 58 HOH HOH . G 4 HOH A 15 415 18 HOH HOH . G 4 HOH A 16 416 11 HOH HOH . G 4 HOH A 17 417 22 HOH HOH . G 4 HOH A 18 418 45 HOH HOH . G 4 HOH A 19 419 70 HOH HOH . G 4 HOH A 20 420 80 HOH HOH . G 4 HOH A 21 421 52 HOH HOH . G 4 HOH A 22 422 91 HOH HOH . G 4 HOH A 23 423 42 HOH HOH . G 4 HOH A 24 424 6 HOH HOH . G 4 HOH A 25 425 49 HOH HOH . G 4 HOH A 26 426 24 HOH HOH . G 4 HOH A 27 427 55 HOH HOH . G 4 HOH A 28 428 2 HOH HOH . G 4 HOH A 29 429 19 HOH HOH . G 4 HOH A 30 430 27 HOH HOH . G 4 HOH A 31 431 20 HOH HOH . G 4 HOH A 32 432 78 HOH HOH . G 4 HOH A 33 433 39 HOH HOH . G 4 HOH A 34 434 44 HOH HOH . G 4 HOH A 35 435 90 HOH HOH . G 4 HOH A 36 436 53 HOH HOH . G 4 HOH A 37 437 29 HOH HOH . G 4 HOH A 38 438 31 HOH HOH . G 4 HOH A 39 439 81 HOH HOH . G 4 HOH A 40 440 86 HOH HOH . G 4 HOH A 41 441 46 HOH HOH . G 4 HOH A 42 442 37 HOH HOH . G 4 HOH A 43 443 3 HOH HOH . G 4 HOH A 44 444 14 HOH HOH . G 4 HOH A 45 445 8 HOH HOH . G 4 HOH A 46 446 84 HOH HOH . G 4 HOH A 47 447 63 HOH HOH . G 4 HOH A 48 448 40 HOH HOH . G 4 HOH A 49 449 60 HOH HOH . G 4 HOH A 50 450 41 HOH HOH . G 4 HOH A 51 451 62 HOH HOH . G 4 HOH A 52 452 28 HOH HOH . G 4 HOH A 53 453 82 HOH HOH . G 4 HOH A 54 454 89 HOH HOH . G 4 HOH A 55 455 23 HOH HOH . G 4 HOH A 56 456 61 HOH HOH . G 4 HOH A 57 457 76 HOH HOH . G 4 HOH A 58 458 66 HOH HOH . G 4 HOH A 59 459 32 HOH HOH . G 4 HOH A 60 460 50 HOH HOH . G 4 HOH A 61 461 92 HOH HOH . G 4 HOH A 62 462 33 HOH HOH . G 4 HOH A 63 463 64 HOH HOH . H 4 HOH B 1 401 73 HOH HOH . H 4 HOH B 2 402 96 HOH HOH . H 4 HOH B 3 403 59 HOH HOH . H 4 HOH B 4 404 79 HOH HOH . H 4 HOH B 5 405 65 HOH HOH . H 4 HOH B 6 406 54 HOH HOH . H 4 HOH B 7 407 10 HOH HOH . H 4 HOH B 8 408 9 HOH HOH . H 4 HOH B 9 409 16 HOH HOH . H 4 HOH B 10 410 34 HOH HOH . H 4 HOH B 11 411 93 HOH HOH . H 4 HOH B 12 412 12 HOH HOH . H 4 HOH B 13 413 13 HOH HOH . H 4 HOH B 14 414 36 HOH HOH . H 4 HOH B 15 415 48 HOH HOH . H 4 HOH B 16 416 67 HOH HOH . H 4 HOH B 17 417 51 HOH HOH . H 4 HOH B 18 418 77 HOH HOH . H 4 HOH B 19 419 57 HOH HOH . H 4 HOH B 20 420 5 HOH HOH . H 4 HOH B 21 421 94 HOH HOH . H 4 HOH B 22 422 85 HOH HOH . H 4 HOH B 23 423 68 HOH HOH . H 4 HOH B 24 424 95 HOH HOH . H 4 HOH B 25 425 69 HOH HOH . H 4 HOH B 26 426 25 HOH HOH . H 4 HOH B 27 427 88 HOH HOH . H 4 HOH B 28 428 4 HOH HOH . H 4 HOH B 29 429 30 HOH HOH . H 4 HOH B 30 430 17 HOH HOH . H 4 HOH B 31 431 47 HOH HOH . H 4 HOH B 32 432 38 HOH HOH . H 4 HOH B 33 433 97 HOH HOH . H 4 HOH B 34 434 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 YUI . . . C 2 -0.04 23.44 -8.855 1 47.74 ? O2 YUI 301 A 1 HETATM 2 C C25 YUI . . . C 2 -1.121 23.85 -8.44 1 46.38 ? C25 YUI 301 A 1 HETATM 3 C C1 YUI . . . C 2 -2.252 23.009 -8.1 1 45.17 ? C1 YUI 301 A 1 HETATM 4 C C YUI . . . C 2 -2.106 21.518 -8.226 1 44.93 ? C YUI 301 A 1 HETATM 5 N N3 YUI . . . C 2 -1.328 25.205 -8.276 1 45.63 ? N3 YUI 301 A 1 HETATM 6 C C24 YUI . . . C 2 -2.473 25.824 -7.843 1 46.27 ? C24 YUI 301 A 1 HETATM 7 O O1 YUI . . . C 2 -2.554 27.036 -7.713 1 46.35 ? O1 YUI 301 A 1 HETATM 8 N N YUI . . . C 2 -3.517 24.969 -7.555 1 48.49 ? N YUI 301 A 1 HETATM 9 C C2 YUI . . . C 2 -3.378 23.604 -7.681 1 46.29 ? C2 YUI 301 A 1 HETATM 10 C C3 YUI . . . C 2 -4.808 25.569 -7.16 1 52.79 ? C3 YUI 301 A 1 HETATM 11 C C23 YUI . . . C 2 -4.8 26.018 -5.711 1 54.46 ? C23 YUI 301 A 1 HETATM 12 C C22 YUI . . . C 2 -6.142 26.649 -5.355 1 56.99 ? C22 YUI 301 A 1 HETATM 13 N N1 YUI . . . C 2 -7.257 25.711 -5.58 1 59.79 ? N1 YUI 301 A 1 HETATM 14 C C5 YUI . . . C 2 -7.273 25.29 -6.989 1 57.07 ? C5 YUI 301 A 1 HETATM 15 C C4 YUI . . . C 2 -5.967 24.614 -7.385 1 54.67 ? C4 YUI 301 A 1 HETATM 16 C C6 YUI . . . C 2 -8.542 26.325 -5.215 1 64.34 ? C6 YUI 301 A 1 HETATM 17 C C7 YUI . . . C 2 -8.686 26.592 -3.733 1 68.94 ? C7 YUI 301 A 1 HETATM 18 N N2 YUI . . . C 2 -9.063 27.821 -3.379 1 70.55 ? N2 YUI 301 A 1 HETATM 19 C C21 YUI . . . C 2 -9.203 28.089 -2.042 1 71.78 ? C21 YUI 301 A 1 HETATM 20 C C20 YUI . . . C 2 -9.593 29.391 -1.646 1 71.75 ? C20 YUI 301 A 1 HETATM 21 C C19 YUI . . . C 2 -9.745 29.693 -0.321 1 72.28 ? C19 YUI 301 A 1 HETATM 22 C C18 YUI . . . C 2 -9.523 28.735 0.654 1 72.54 ? C18 YUI 301 A 1 HETATM 23 C C17 YUI . . . C 2 -9.142 27.473 0.309 1 72.69 ? C17 YUI 301 A 1 HETATM 24 C C16 YUI . . . C 2 -8.965 27.116 -1.049 1 73.42 ? C16 YUI 301 A 1 HETATM 25 C C9 YUI . . . C 2 -8.548 25.831 -1.483 1 76.27 ? C9 YUI 301 A 1 HETATM 26 C C8 YUI . . . C 2 -8.421 25.571 -2.831 1 72.65 ? C8 YUI 301 A 1 HETATM 27 O O YUI . . . C 2 -8.193 24.952 -0.458 1 82.55 ? O YUI 301 A 1 HETATM 28 C C10 YUI . . . C 2 -8.725 23.66 -0.453 1 88.56 ? C10 YUI 301 A 1 HETATM 29 C C15 YUI . . . C 2 -8.19 22.815 0.506 1 91.83 ? C15 YUI 301 A 1 HETATM 30 C C14 YUI . . . C 2 -8.679 21.529 0.591 1 95.09 ? C14 YUI 301 A 1 HETATM 31 CL CL YUI . . . C 2 -8.023 20.46 1.8 1 98.52 ? CL YUI 301 A 1 HETATM 32 C C13 YUI . . . C 2 -9.669 21.068 -0.248 1 93.98 ? C13 YUI 301 A 1 HETATM 33 C C12 YUI . . . C 2 -10.187 21.925 -1.203 1 92.52 ? C12 YUI 301 A 1 HETATM 34 C C11 YUI . . . C 2 -9.721 23.224 -1.313 1 90.9 ? C11 YUI 301 A 1 HETATM 35 H H2 YUI . . . C 2 -1.688 21.252 -9.197 0 53.91 ? H2 YUI 301 A 1 HETATM 36 H H1 YUI . . . C 2 -3.067 21.012 -8.138 0 53.91 ? H1 YUI 301 A 1 HETATM 37 H H3 YUI . . . C 2 -1.442 21.097 -7.472 0 53.91 ? H3 YUI 301 A 1 HETATM 38 H H YUI . . . C 2 -0.556 25.826 -8.498 0 54.76 ? H YUI 301 A 1 HETATM 39 H H4 YUI . . . C 2 -4.254 23.015 -7.414 0 55.55 ? H4 YUI 301 A 1 HETATM 40 H H5 YUI . . . C 2 -4.976 26.438 -7.795 0 63.35 ? H5 YUI 301 A 1 HETATM 41 H H24 YUI . . . C 2 -4.006 26.746 -5.556 0 65.35 ? H24 YUI 301 A 1 HETATM 42 H H23 YUI . . . C 2 -4.567 25.228 -4.998 0 65.35 ? H23 YUI 301 A 1 HETATM 43 H H21 YUI . . . C 2 -6.315 27.547 -5.946 0 68.39 ? H21 YUI 301 A 1 HETATM 44 H H22 YUI . . . C 2 -6.178 26.995 -4.323 0 68.39 ? H22 YUI 301 A 1 HETATM 45 H H9 YUI . . . C 2 -8.131 24.644 -7.171 0 68.49 ? H9 YUI 301 A 1 HETATM 46 H H8 YUI . . . C 2 -7.463 26.167 -7.607 0 68.49 ? H8 YUI 301 A 1 HETATM 47 H H7 YUI . . . C 2 -5.864 23.666 -6.86 0 65.6 ? H7 YUI 301 A 1 HETATM 48 H H6 YUI . . . C 2 -6.011 24.304 -8.428 0 65.6 ? H6 YUI 301 A 1 HETATM 49 H H11 YUI . . . C 2 -9.416 25.754 -5.524 0 77.2 ? H11 YUI 301 A 1 HETATM 50 H H10 YUI . . . C 2 -8.696 27.275 -5.724 0 77.2 ? H10 YUI 301 A 1 HETATM 51 H H20 YUI . . . C 2 -9.771 30.146 -2.412 0 86.11 ? H20 YUI 301 A 1 HETATM 52 H H19 YUI . . . C 2 -10.043 30.698 -0.024 0 86.73 ? H19 YUI 301 A 1 HETATM 53 H H18 YUI . . . C 2 -9.655 28.995 1.703 0 87.04 ? H18 YUI 301 A 1 HETATM 54 H H17 YUI . . . C 2 -8.969 26.727 1.084 0 87.23 ? H17 YUI 301 A 1 HETATM 55 H H12 YUI . . . C 2 -8.118 24.58 -3.165 0 87.19 ? H12 YUI 301 A 1 HETATM 56 H H16 YUI . . . C 2 -7.403 23.087 1.208 0 110.2 ? H16 YUI 301 A 1 HETATM 57 H H15 YUI . . . C 2 -10.025 20.043 -0.146 0 112.78 ? H15 YUI 301 A 1 HETATM 58 H H14 YUI . . . C 2 -10.969 21.565 -1.869 0 111.02 ? H14 YUI 301 A 1 HETATM 59 H H13 YUI . . . C 2 -10.127 23.901 -2.063 0 109.08 ? H13 YUI 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 59 #