data_5NR7 # _model_server_result.job_id Ad6Y3-ODZSmvZWG3OlOCeA _model_server_result.datetime_utc '2024-11-14 18:24:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nr7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 5NR7 # _exptl.entry_id 5NR7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 476.955 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[1-[[4-(3-chloranylphenoxy)quinolin-2-yl]methyl]piperidin-4-yl]-5-methyl-pyrimidine-2,4-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5NR7 _cell.length_a 73.63 _cell.length_b 73.63 _cell.length_c 72.86 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NR7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C26 H25 Cl N4 O3' _chem_comp.formula_weight 476.955 _chem_comp.id YUI _chem_comp.mon_nstd_flag . _chem_comp.name 1-[1-[[4-(3-chloranylphenoxy)quinolin-2-yl]methyl]piperidin-4-yl]-5-methyl-pyrimidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C25 YUI doub 376 n n C25 N3 YUI sing 377 n n C25 C1 YUI sing 378 n n N3 C24 YUI sing 379 n n C C1 YUI sing 380 n n C1 C2 YUI doub 381 n n C24 O1 YUI doub 382 n n C24 N YUI sing 383 n n C2 N YUI sing 384 n n N C3 YUI sing 385 n n C4 C3 YUI sing 386 n n C4 C5 YUI sing 387 n n C3 C23 YUI sing 388 n n C5 N1 YUI sing 389 n n C23 C22 YUI sing 390 n n N1 C22 YUI sing 391 n n N1 C6 YUI sing 392 n n C6 C7 YUI sing 393 n n C7 N2 YUI doub 394 n y C7 C8 YUI sing 395 n y N2 C21 YUI sing 396 n y C8 C9 YUI doub 397 n y C21 C20 YUI doub 398 n y C21 C16 YUI sing 399 n y C20 C19 YUI sing 400 n y C9 C16 YUI sing 401 n y C9 O YUI sing 402 n n C11 C12 YUI doub 403 n y C11 C10 YUI sing 404 n y C12 C13 YUI sing 405 n y C16 C17 YUI doub 406 n y O C10 YUI sing 407 n n C10 C15 YUI doub 408 n y C19 C18 YUI doub 409 n y C13 C14 YUI doub 410 n y C17 C18 YUI sing 411 n y C15 C14 YUI sing 412 n y C14 CL YUI sing 413 n n C H2 YUI sing 414 n n C H1 YUI sing 415 n n C H3 YUI sing 416 n n N3 H YUI sing 417 n n C2 H4 YUI sing 418 n n C3 H5 YUI sing 419 n n C23 H24 YUI sing 420 n n C23 H23 YUI sing 421 n n C22 H21 YUI sing 422 n n C22 H22 YUI sing 423 n n C5 H9 YUI sing 424 n n C5 H8 YUI sing 425 n n C4 H7 YUI sing 426 n n C4 H6 YUI sing 427 n n C6 H11 YUI sing 428 n n C6 H10 YUI sing 429 n n C20 H20 YUI sing 430 n n C19 H19 YUI sing 431 n n C18 H18 YUI sing 432 n n C17 H17 YUI sing 433 n n C8 H12 YUI sing 434 n n C15 H16 YUI sing 435 n n C13 H15 YUI sing 436 n n C12 H14 YUI sing 437 n n C11 H13 YUI sing 438 n n # _atom_sites.entry_id 5NR7 _atom_sites.fract_transf_matrix[1][1] 0.013581 _atom_sites.fract_transf_matrix[1][2] 0.007841 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 YUI A 1 301 1 YUI YUI . D 3 CL A 1 302 1 CL CL . E 2 YUI B 1 301 2 YUI YUI . F 3 CL B 1 302 2 CL CL . G 4 HOH A 1 401 26 HOH HOH . G 4 HOH A 2 402 74 HOH HOH . G 4 HOH A 3 403 75 HOH HOH . G 4 HOH A 4 404 7 HOH HOH . G 4 HOH A 5 405 43 HOH HOH . G 4 HOH A 6 406 87 HOH HOH . G 4 HOH A 7 407 72 HOH HOH . G 4 HOH A 8 408 71 HOH HOH . G 4 HOH A 9 409 56 HOH HOH . G 4 HOH A 10 410 35 HOH HOH . G 4 HOH A 11 411 15 HOH HOH . G 4 HOH A 12 412 1 HOH HOH . G 4 HOH A 13 413 21 HOH HOH . G 4 HOH A 14 414 58 HOH HOH . G 4 HOH A 15 415 18 HOH HOH . G 4 HOH A 16 416 11 HOH HOH . G 4 HOH A 17 417 22 HOH HOH . G 4 HOH A 18 418 45 HOH HOH . G 4 HOH A 19 419 70 HOH HOH . G 4 HOH A 20 420 80 HOH HOH . G 4 HOH A 21 421 52 HOH HOH . G 4 HOH A 22 422 91 HOH HOH . G 4 HOH A 23 423 42 HOH HOH . G 4 HOH A 24 424 6 HOH HOH . G 4 HOH A 25 425 49 HOH HOH . G 4 HOH A 26 426 24 HOH HOH . G 4 HOH A 27 427 55 HOH HOH . G 4 HOH A 28 428 2 HOH HOH . G 4 HOH A 29 429 19 HOH HOH . G 4 HOH A 30 430 27 HOH HOH . G 4 HOH A 31 431 20 HOH HOH . G 4 HOH A 32 432 78 HOH HOH . G 4 HOH A 33 433 39 HOH HOH . G 4 HOH A 34 434 44 HOH HOH . G 4 HOH A 35 435 90 HOH HOH . G 4 HOH A 36 436 53 HOH HOH . G 4 HOH A 37 437 29 HOH HOH . G 4 HOH A 38 438 31 HOH HOH . G 4 HOH A 39 439 81 HOH HOH . G 4 HOH A 40 440 86 HOH HOH . G 4 HOH A 41 441 46 HOH HOH . G 4 HOH A 42 442 37 HOH HOH . G 4 HOH A 43 443 3 HOH HOH . G 4 HOH A 44 444 14 HOH HOH . G 4 HOH A 45 445 8 HOH HOH . G 4 HOH A 46 446 84 HOH HOH . G 4 HOH A 47 447 63 HOH HOH . G 4 HOH A 48 448 40 HOH HOH . G 4 HOH A 49 449 60 HOH HOH . G 4 HOH A 50 450 41 HOH HOH . G 4 HOH A 51 451 62 HOH HOH . G 4 HOH A 52 452 28 HOH HOH . G 4 HOH A 53 453 82 HOH HOH . G 4 HOH A 54 454 89 HOH HOH . G 4 HOH A 55 455 23 HOH HOH . G 4 HOH A 56 456 61 HOH HOH . G 4 HOH A 57 457 76 HOH HOH . G 4 HOH A 58 458 66 HOH HOH . G 4 HOH A 59 459 32 HOH HOH . G 4 HOH A 60 460 50 HOH HOH . G 4 HOH A 61 461 92 HOH HOH . G 4 HOH A 62 462 33 HOH HOH . G 4 HOH A 63 463 64 HOH HOH . H 4 HOH B 1 401 73 HOH HOH . H 4 HOH B 2 402 96 HOH HOH . H 4 HOH B 3 403 59 HOH HOH . H 4 HOH B 4 404 79 HOH HOH . H 4 HOH B 5 405 65 HOH HOH . H 4 HOH B 6 406 54 HOH HOH . H 4 HOH B 7 407 10 HOH HOH . H 4 HOH B 8 408 9 HOH HOH . H 4 HOH B 9 409 16 HOH HOH . H 4 HOH B 10 410 34 HOH HOH . H 4 HOH B 11 411 93 HOH HOH . H 4 HOH B 12 412 12 HOH HOH . H 4 HOH B 13 413 13 HOH HOH . H 4 HOH B 14 414 36 HOH HOH . H 4 HOH B 15 415 48 HOH HOH . H 4 HOH B 16 416 67 HOH HOH . H 4 HOH B 17 417 51 HOH HOH . H 4 HOH B 18 418 77 HOH HOH . H 4 HOH B 19 419 57 HOH HOH . H 4 HOH B 20 420 5 HOH HOH . H 4 HOH B 21 421 94 HOH HOH . H 4 HOH B 22 422 85 HOH HOH . H 4 HOH B 23 423 68 HOH HOH . H 4 HOH B 24 424 95 HOH HOH . H 4 HOH B 25 425 69 HOH HOH . H 4 HOH B 26 426 25 HOH HOH . H 4 HOH B 27 427 88 HOH HOH . H 4 HOH B 28 428 4 HOH HOH . H 4 HOH B 29 429 30 HOH HOH . H 4 HOH B 30 430 17 HOH HOH . H 4 HOH B 31 431 47 HOH HOH . H 4 HOH B 32 432 38 HOH HOH . H 4 HOH B 33 433 97 HOH HOH . H 4 HOH B 34 434 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 YUI . . . E 2 15.979 30.24 9.217 1 61.56 ? O2 YUI 301 B 1 HETATM 2 C C25 YUI . . . E 2 16.527 31.247 8.773 1 60.3 ? C25 YUI 301 B 1 HETATM 3 C C1 YUI . . . E 2 17.894 31.305 8.295 1 59.09 ? C1 YUI 301 B 1 HETATM 4 C C YUI . . . E 2 18.728 30.055 8.341 1 57.48 ? C YUI 301 B 1 HETATM 5 N N3 YUI . . . E 2 15.832 32.438 8.704 1 61.41 ? N3 YUI 301 B 1 HETATM 6 C C24 YUI . . . E 2 16.295 33.645 8.244 1 62.95 ? C24 YUI 301 B 1 HETATM 7 O O1 YUI . . . E 2 15.597 34.649 8.221 1 61.88 ? O1 YUI 301 B 1 HETATM 8 N N YUI . . . E 2 17.604 33.632 7.812 1 65.79 ? N YUI 301 B 1 HETATM 9 C C2 YUI . . . E 2 18.356 32.479 7.841 1 61.4 ? C2 YUI 301 B 1 HETATM 10 C C3 YUI . . . E 2 18.197 34.909 7.364 1 73.76 ? C3 YUI 301 B 1 HETATM 11 C C23 YUI . . . E 2 17.85 35.213 5.919 1 76.88 ? C23 YUI 301 B 1 HETATM 12 C C22 YUI . . . E 2 18.468 36.545 5.502 1 80.15 ? C22 YUI 301 B 1 HETATM 13 N N1 YUI . . . E 2 19.933 36.539 5.672 1 84.15 ? N1 YUI 301 B 1 HETATM 14 C C5 YUI . . . E 2 20.269 36.253 7.077 1 81.01 ? C5 YUI 301 B 1 HETATM 15 C C4 YUI . . . E 2 19.705 34.916 7.528 1 77.66 ? C4 YUI 301 B 1 HETATM 16 C C6 YUI . . . E 2 20.518 37.825 5.264 1 91.04 ? C6 YUI 301 B 1 HETATM 17 C C7 YUI . . . E 2 20.429 38.121 3.787 1 97.77 ? C7 YUI 301 B 1 HETATM 18 N N2 YUI . . . E 2 19.986 39.336 3.458 1 99.83 ? N2 YUI 301 B 1 HETATM 19 C C21 YUI . . . E 2 19.95 39.673 2.132 1 102.61 ? C21 YUI 301 B 1 HETATM 20 C C20 YUI . . . E 2 19.493 40.962 1.768 1 102.86 ? C20 YUI 301 B 1 HETATM 21 C C19 YUI . . . E 2 19.454 41.336 0.453 1 103.12 ? C19 YUI 301 B 1 HETATM 22 C C18 YUI . . . E 2 19.86 40.465 -0.543 1 103.66 ? C18 YUI 301 B 1 HETATM 23 C C17 YUI . . . E 2 20.302 39.215 -0.231 1 104.39 ? C17 YUI 301 B 1 HETATM 24 C C16 YUI . . . E 2 20.354 38.781 1.116 1 105.02 ? C16 YUI 301 B 1 HETATM 25 C C9 YUI . . . E 2 20.791 37.492 1.518 1 107.75 ? C9 YUI 301 B 1 HETATM 26 C C8 YUI . . . E 2 20.835 37.17 2.857 1 102.73 ? C8 YUI 301 B 1 HETATM 27 O O YUI . . . E 2 21.069 36.608 0.474 1 114.73 ? O YUI 301 B 1 HETATM 28 C C10 YUI . . . E 2 22.293 35.938 0.462 1 120.77 ? C10 YUI 301 B 1 HETATM 29 C C15 YUI . . . E 2 22.369 34.829 -0.366 1 123.78 ? C15 YUI 301 B 1 HETATM 30 C C14 YUI . . . E 2 23.562 34.141 -0.43 1 126.43 ? C14 YUI 301 B 1 HETATM 31 CL CL YUI . . . E 2 23.675 32.749 -1.471 1 128.03 ? CL YUI 301 B 1 HETATM 32 C C13 YUI . . . E 2 24.665 34.523 0.302 1 126.38 ? C13 YUI 301 B 1 HETATM 33 C C12 YUI . . . E 2 24.568 35.633 1.124 1 125.35 ? C12 YUI 301 B 1 HETATM 34 C C11 YUI . . . E 2 23.385 36.347 1.209 1 123.51 ? C11 YUI 301 B 1 HETATM 35 H H2 YUI . . . E 2 18.617 29.553 9.301 0 68.97 ? H2 YUI 301 B 1 HETATM 36 H H1 YUI . . . E 2 19.787 30.275 8.211 0 68.97 ? H1 YUI 301 B 1 HETATM 37 H H3 YUI . . . E 2 18.446 29.335 7.575 0 68.97 ? H3 YUI 301 B 1 HETATM 38 H H YUI . . . E 2 14.869 32.437 9.026 0 73.69 ? H YUI 301 B 1 HETATM 39 H H4 YUI . . . E 2 19.374 32.569 7.467 0 73.68 ? H4 YUI 301 B 1 HETATM 40 H H5 YUI . . . E 2 17.797 35.7 7.996 0 88.52 ? H5 YUI 301 B 1 HETATM 41 H H24 YUI . . . E 2 16.768 35.265 5.805 0 92.25 ? H24 YUI 301 B 1 HETATM 42 H H23 YUI . . . E 2 18.145 34.437 5.214 0 92.25 ? H23 YUI 301 B 1 HETATM 43 H H21 YUI . . . E 2 18.051 37.364 6.086 0 96.18 ? H21 YUI 301 B 1 HETATM 44 H H22 YUI . . . E 2 18.236 36.806 4.47 0 96.18 ? H22 YUI 301 B 1 HETATM 45 H H9 YUI . . . E 2 21.348 36.301 7.213 0 97.22 ? H9 YUI 301 B 1 HETATM 46 H H8 YUI . . . E 2 19.885 37.066 7.692 0 97.22 ? H8 YUI 301 B 1 HETATM 47 H H7 YUI . . . E 2 20.207 34.104 7.003 0 93.19 ? H7 YUI 301 B 1 HETATM 48 H H6 YUI . . . E 2 19.977 34.729 8.566 0 93.19 ? H6 YUI 301 B 1 HETATM 49 H H11 YUI . . . E 2 21.561 37.948 5.549 0 109.24 ? H11 YUI 301 B 1 HETATM 50 H H10 YUI . . . E 2 20.044 38.66 5.778 0 109.24 ? H10 YUI 301 B 1 HETATM 51 H H20 YUI . . . E 2 19.175 41.65 2.55 0 123.44 ? H20 YUI 301 B 1 HETATM 52 H H19 YUI . . . E 2 19.1 42.33 0.182 0 123.74 ? H19 YUI 301 B 1 HETATM 53 H H18 YUI . . . E 2 19.824 40.784 -1.584 0 124.39 ? H18 YUI 301 B 1 HETATM 54 H H17 YUI . . . E 2 20.619 38.537 -1.022 0 125.27 ? H17 YUI 301 B 1 HETATM 55 H H12 YUI . . . E 2 21.184 36.185 3.166 0 123.28 ? H12 YUI 301 B 1 HETATM 56 H H16 YUI . . . E 2 21.552 34.451 -0.979 0 148.53 ? H16 YUI 301 B 1 HETATM 57 H H15 YUI . . . E 2 25.588 33.951 0.221 0 151.66 ? H15 YUI 301 B 1 HETATM 58 H H14 YUI . . . E 2 25.436 35.938 1.705 0 150.42 ? H14 YUI 301 B 1 HETATM 59 H H13 YUI . . . E 2 23.307 37.222 1.854 0 148.21 ? H13 YUI 301 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 59 #