data_5NRD # _model_server_result.job_id A5tvrJh3wl1k5D3n7YUlZw _model_server_result.datetime_utc '2024-11-25 17:04:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nrd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 5NRD # _exptl.entry_id 5NRD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 566.302 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description "GALACTOSE-URIDINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.89 _cell.angle_gamma 90 _cell.entry_id 5NRD _cell.length_a 133.414 _cell.length_b 65.694 _cell.length_c 83.014 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NRD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C BGC 1 C 1 BGC A 366 LAT 2 n C GAL 2 C 2 GAL A 366 LAT # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O4 BGC . C BGC 1 1_555 C C1 GAL . C GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 sing metalc ? metalc1 A OD2 ASP 149 A ASP 225 1_555 D CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc2 A OD1 ASP 151 A ASP 227 1_555 D CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc3 A OD2 ASP 151 A ASP 227 1_555 D CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc4 D CO CO . A CO 402 1_555 E O1B GDU . A GDU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc5 D CO CO . A CO 402 1_555 E O1A GDU . A GDU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc6 D CO CO . A CO 402 1_555 I O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc7 B OD2 ASP 151 B ASP 227 1_555 G CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc8 G CO CO . B CO 401 1_555 H O1B GDU . B GDU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc9 G CO CO . B CO 401 1_555 H O1A GDU . B GDU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc10 G CO CO . B CO 401 1_555 J O HOH . B HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? # _chem_comp.formula 'C15 H24 N2 O17 P2' _chem_comp.formula_weight 566.302 _chem_comp.id GDU _chem_comp.mon_nstd_flag . _chem_comp.name "GALACTOSE-URIDINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms UDP-D-GALACTOPYRANOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 GDU sing 131 n n N1 C6 GDU sing 132 n n N1 C1D GDU sing 133 n n C2 N3 GDU sing 134 n n C2 O2 GDU doub 135 n n N3 C4 GDU sing 136 n n N3 HN3 GDU sing 137 n n C4 C5 GDU sing 138 n n C4 O4 GDU doub 139 n n C5 C6 GDU doub 140 n n C5 H5 GDU sing 141 n n C6 H6 GDU sing 142 n n C1D C2D GDU sing 143 n n C1D O4D GDU sing 144 n n C1D H1D GDU sing 145 n n C2D O2D GDU sing 146 n n C2D C3D GDU sing 147 n n C2D H2D GDU sing 148 n n O2D HO2' GDU sing 149 n n C3D C4D GDU sing 150 n n C3D O3D GDU sing 151 n n C3D H3D GDU sing 152 n n C4D O4D GDU sing 153 n n C4D C5D GDU sing 154 n n C4D H4D GDU sing 155 n n O3D HO3' GDU sing 156 n n C5D O5D GDU sing 157 n n C5D "H5'1" GDU sing 158 n n C5D "H5'2" GDU sing 159 n n O5D PA GDU sing 160 n n PA O1A GDU doub 161 n n PA O2A GDU sing 162 n n PA O3A GDU sing 163 n n O2A HOA2 GDU sing 164 n n O3A PB GDU sing 165 n n PB O1B GDU doub 166 n n PB O2B GDU sing 167 n n PB O3B GDU sing 168 n n O2B HOB2 GDU sing 169 n n O3B C1' GDU sing 170 n n C1' C2' GDU sing 171 n n C1' O5' GDU sing 172 n n C1' H1' GDU sing 173 n n C2' C3' GDU sing 174 n n C2' O2' GDU sing 175 n n C2' H2' GDU sing 176 n n C3' C4' GDU sing 177 n n C3' O3' GDU sing 178 n n C3' H3' GDU sing 179 n n C4' C5' GDU sing 180 n n C4' O4' GDU sing 181 n n C4' H4' GDU sing 182 n n C5' C6' GDU sing 183 n n C5' O5' GDU sing 184 n n C5' H5' GDU sing 185 n n C6' O6' GDU sing 186 n n C6' "H6'1" GDU sing 187 n n C6' "H6'2" GDU sing 188 n n O2' HO2A GDU sing 189 n n O3' HO3A GDU sing 190 n n O4' HO4' GDU sing 191 n n O6' HO6' GDU sing 192 n n # _atom_sites.entry_id 5NRD _atom_sites.fract_transf_matrix[1][1] 0.007495 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001716 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015222 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CO A 1 402 367 CO CO . E 4 GDU A 1 403 368 GDU GDU . F 5 GOL A 1 404 370 GOL GOL . G 3 CO B 1 401 360 CO CO . H 4 GDU B 1 402 361 GDU GDU . I 6 HOH A 1 501 464 HOH HOH . I 6 HOH A 2 502 483 HOH HOH . I 6 HOH A 3 503 388 HOH HOH . I 6 HOH A 4 504 462 HOH HOH . I 6 HOH A 5 505 408 HOH HOH . I 6 HOH A 6 506 371 HOH HOH . I 6 HOH A 7 507 490 HOH HOH . I 6 HOH A 8 508 424 HOH HOH . I 6 HOH A 9 509 378 HOH HOH . I 6 HOH A 10 510 401 HOH HOH . I 6 HOH A 11 511 402 HOH HOH . I 6 HOH A 12 512 419 HOH HOH . I 6 HOH A 13 513 407 HOH HOH . I 6 HOH A 14 514 444 HOH HOH . I 6 HOH A 15 515 403 HOH HOH . I 6 HOH A 16 516 442 HOH HOH . I 6 HOH A 17 517 422 HOH HOH . I 6 HOH A 18 518 446 HOH HOH . I 6 HOH A 19 519 383 HOH HOH . I 6 HOH A 20 520 454 HOH HOH . I 6 HOH A 21 521 382 HOH HOH . I 6 HOH A 22 522 429 HOH HOH . I 6 HOH A 23 523 394 HOH HOH . I 6 HOH A 24 524 385 HOH HOH . I 6 HOH A 25 525 506 HOH HOH . I 6 HOH A 26 526 465 HOH HOH . I 6 HOH A 27 527 489 HOH HOH . I 6 HOH A 28 528 453 HOH HOH . I 6 HOH A 29 529 457 HOH HOH . I 6 HOH A 30 530 499 HOH HOH . I 6 HOH A 31 531 405 HOH HOH . I 6 HOH A 32 532 400 HOH HOH . I 6 HOH A 33 533 466 HOH HOH . I 6 HOH A 34 534 502 HOH HOH . I 6 HOH A 35 535 484 HOH HOH . I 6 HOH A 36 536 503 HOH HOH . I 6 HOH A 37 537 381 HOH HOH . I 6 HOH A 38 538 412 HOH HOH . I 6 HOH A 39 539 477 HOH HOH . I 6 HOH A 40 540 463 HOH HOH . I 6 HOH A 41 541 494 HOH HOH . I 6 HOH A 42 542 439 HOH HOH . I 6 HOH A 43 543 404 HOH HOH . I 6 HOH A 44 544 410 HOH HOH . I 6 HOH A 45 545 443 HOH HOH . I 6 HOH A 46 546 507 HOH HOH . I 6 HOH A 47 547 450 HOH HOH . I 6 HOH A 48 548 445 HOH HOH . I 6 HOH A 49 549 397 HOH HOH . I 6 HOH A 50 550 390 HOH HOH . I 6 HOH A 51 551 421 HOH HOH . I 6 HOH A 52 552 451 HOH HOH . I 6 HOH A 53 553 455 HOH HOH . I 6 HOH A 54 554 426 HOH HOH . I 6 HOH A 55 555 389 HOH HOH . I 6 HOH A 56 556 395 HOH HOH . I 6 HOH A 57 557 379 HOH HOH . I 6 HOH A 58 558 374 HOH HOH . I 6 HOH A 59 559 456 HOH HOH . I 6 HOH A 60 560 468 HOH HOH . I 6 HOH A 61 561 433 HOH HOH . I 6 HOH A 62 562 414 HOH HOH . I 6 HOH A 63 563 467 HOH HOH . I 6 HOH A 64 564 440 HOH HOH . I 6 HOH A 65 565 430 HOH HOH . I 6 HOH A 66 566 417 HOH HOH . I 6 HOH A 67 567 399 HOH HOH . I 6 HOH A 68 568 418 HOH HOH . I 6 HOH A 69 569 461 HOH HOH . I 6 HOH A 70 570 376 HOH HOH . I 6 HOH A 71 571 411 HOH HOH . I 6 HOH A 72 572 372 HOH HOH . I 6 HOH A 73 573 393 HOH HOH . I 6 HOH A 74 574 386 HOH HOH . I 6 HOH A 75 575 482 HOH HOH . I 6 HOH A 76 576 373 HOH HOH . I 6 HOH A 77 577 420 HOH HOH . I 6 HOH A 78 578 496 HOH HOH . I 6 HOH A 79 579 392 HOH HOH . I 6 HOH A 80 580 460 HOH HOH . I 6 HOH A 81 581 472 HOH HOH . I 6 HOH A 82 582 438 HOH HOH . I 6 HOH A 83 583 427 HOH HOH . I 6 HOH A 84 584 387 HOH HOH . I 6 HOH A 85 585 377 HOH HOH . I 6 HOH A 86 586 473 HOH HOH . I 6 HOH A 87 587 458 HOH HOH . I 6 HOH A 88 588 432 HOH HOH . I 6 HOH A 89 589 396 HOH HOH . I 6 HOH A 90 590 428 HOH HOH . I 6 HOH A 91 591 398 HOH HOH . I 6 HOH A 92 592 478 HOH HOH . I 6 HOH A 93 593 416 HOH HOH . I 6 HOH A 94 594 508 HOH HOH . I 6 HOH A 95 595 406 HOH HOH . I 6 HOH A 96 596 459 HOH HOH . I 6 HOH A 97 597 431 HOH HOH . I 6 HOH A 98 598 425 HOH HOH . I 6 HOH A 99 599 448 HOH HOH . I 6 HOH A 100 600 491 HOH HOH . I 6 HOH A 101 601 391 HOH HOH . I 6 HOH A 102 602 505 HOH HOH . I 6 HOH A 103 603 415 HOH HOH . I 6 HOH A 104 604 447 HOH HOH . I 6 HOH A 105 605 384 HOH HOH . I 6 HOH A 106 606 501 HOH HOH . I 6 HOH A 107 607 436 HOH HOH . I 6 HOH A 108 608 452 HOH HOH . I 6 HOH A 109 609 487 HOH HOH . I 6 HOH A 110 610 492 HOH HOH . I 6 HOH A 111 611 380 HOH HOH . I 6 HOH A 112 612 481 HOH HOH . I 6 HOH A 113 613 480 HOH HOH . I 6 HOH A 114 614 470 HOH HOH . I 6 HOH A 115 615 435 HOH HOH . I 6 HOH A 116 616 434 HOH HOH . I 6 HOH A 117 617 476 HOH HOH . I 6 HOH A 118 618 474 HOH HOH . I 6 HOH A 119 619 449 HOH HOH . I 6 HOH A 120 620 437 HOH HOH . I 6 HOH A 121 621 409 HOH HOH . I 6 HOH A 122 622 500 HOH HOH . I 6 HOH A 123 623 488 HOH HOH . I 6 HOH A 124 624 375 HOH HOH . I 6 HOH A 125 625 471 HOH HOH . I 6 HOH A 126 626 475 HOH HOH . I 6 HOH A 127 627 442 HOH HOH . I 6 HOH A 128 628 469 HOH HOH . I 6 HOH A 129 629 385 HOH HOH . I 6 HOH A 130 630 413 HOH HOH . I 6 HOH A 131 631 504 HOH HOH . I 6 HOH A 132 632 479 HOH HOH . I 6 HOH A 133 633 485 HOH HOH . I 6 HOH A 134 634 495 HOH HOH . J 6 HOH B 1 501 382 HOH HOH . J 6 HOH B 2 502 413 HOH HOH . J 6 HOH B 3 503 366 HOH HOH . J 6 HOH B 4 504 381 HOH HOH . J 6 HOH B 5 505 422 HOH HOH . J 6 HOH B 6 506 435 HOH HOH . J 6 HOH B 7 507 420 HOH HOH . J 6 HOH B 8 508 378 HOH HOH . J 6 HOH B 9 509 449 HOH HOH . J 6 HOH B 10 510 423 HOH HOH . J 6 HOH B 11 511 383 HOH HOH . J 6 HOH B 12 512 390 HOH HOH . J 6 HOH B 13 513 429 HOH HOH . J 6 HOH B 14 514 421 HOH HOH . J 6 HOH B 15 515 407 HOH HOH . J 6 HOH B 16 516 380 HOH HOH . J 6 HOH B 17 517 387 HOH HOH . J 6 HOH B 18 518 402 HOH HOH . J 6 HOH B 19 519 399 HOH HOH . J 6 HOH B 20 520 433 HOH HOH . J 6 HOH B 21 521 372 HOH HOH . J 6 HOH B 22 522 373 HOH HOH . J 6 HOH B 23 523 440 HOH HOH . J 6 HOH B 24 524 406 HOH HOH . J 6 HOH B 25 525 369 HOH HOH . J 6 HOH B 26 526 441 HOH HOH . J 6 HOH B 27 527 459 HOH HOH . J 6 HOH B 28 528 403 HOH HOH . J 6 HOH B 29 529 365 HOH HOH . J 6 HOH B 30 530 377 HOH HOH . J 6 HOH B 31 531 370 HOH HOH . J 6 HOH B 32 532 389 HOH HOH . J 6 HOH B 33 533 400 HOH HOH . J 6 HOH B 34 534 394 HOH HOH . J 6 HOH B 35 535 386 HOH HOH . J 6 HOH B 36 536 434 HOH HOH . J 6 HOH B 37 537 439 HOH HOH . J 6 HOH B 38 538 367 HOH HOH . J 6 HOH B 39 539 432 HOH HOH . J 6 HOH B 40 540 411 HOH HOH . J 6 HOH B 41 541 424 HOH HOH . J 6 HOH B 42 542 412 HOH HOH . J 6 HOH B 43 543 431 HOH HOH . J 6 HOH B 44 544 374 HOH HOH . J 6 HOH B 45 545 425 HOH HOH . J 6 HOH B 46 546 404 HOH HOH . J 6 HOH B 47 547 395 HOH HOH . J 6 HOH B 48 548 397 HOH HOH . J 6 HOH B 49 549 388 HOH HOH . J 6 HOH B 50 550 376 HOH HOH . J 6 HOH B 51 551 417 HOH HOH . J 6 HOH B 52 552 392 HOH HOH . J 6 HOH B 53 553 371 HOH HOH . J 6 HOH B 54 554 401 HOH HOH . J 6 HOH B 55 555 426 HOH HOH . J 6 HOH B 56 556 493 HOH HOH . J 6 HOH B 57 557 368 HOH HOH . J 6 HOH B 58 558 398 HOH HOH . J 6 HOH B 59 559 408 HOH HOH . J 6 HOH B 60 560 438 HOH HOH . J 6 HOH B 61 561 384 HOH HOH . J 6 HOH B 62 562 410 HOH HOH . J 6 HOH B 63 563 405 HOH HOH . J 6 HOH B 64 564 423 HOH HOH . J 6 HOH B 65 565 379 HOH HOH . J 6 HOH B 66 566 409 HOH HOH . J 6 HOH B 67 567 391 HOH HOH . J 6 HOH B 68 568 418 HOH HOH . J 6 HOH B 69 569 393 HOH HOH . J 6 HOH B 70 570 414 HOH HOH . J 6 HOH B 71 571 375 HOH HOH . J 6 HOH B 72 572 430 HOH HOH . J 6 HOH B 73 573 447 HOH HOH . J 6 HOH B 74 574 415 HOH HOH . J 6 HOH B 75 575 428 HOH HOH . J 6 HOH B 76 576 436 HOH HOH . J 6 HOH B 77 577 443 HOH HOH . J 6 HOH B 78 578 498 HOH HOH . J 6 HOH B 79 579 448 HOH HOH . J 6 HOH B 80 580 416 HOH HOH . J 6 HOH B 81 581 444 HOH HOH . J 6 HOH B 82 582 437 HOH HOH . J 6 HOH B 83 583 451 HOH HOH . J 6 HOH B 84 584 427 HOH HOH . J 6 HOH B 85 585 445 HOH HOH . J 6 HOH B 86 586 396 HOH HOH . J 6 HOH B 87 587 419 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GDU . . . H 4 -57.854 -11.385 26.578 0.74 49.23 ? N1 GDU 402 B 1 HETATM 2 C C2 GDU . . . H 4 -57.998 -10.128 26.02 0.74 50.44 ? C2 GDU 402 B 1 HETATM 3 N N3 GDU . . . H 4 -56.863 -9.362 26.007 0.74 52.51 ? N3 GDU 402 B 1 HETATM 4 C C4 GDU . . . H 4 -55.617 -9.715 26.486 0.74 53.92 ? C4 GDU 402 B 1 HETATM 5 C C5 GDU . . . H 4 -55.542 -11.03 27.049 0.74 50.23 ? C5 GDU 402 B 1 HETATM 6 C C6 GDU . . . H 4 -56.639 -11.804 27.076 0.74 50.33 ? C6 GDU 402 B 1 HETATM 7 O O2 GDU . . . H 4 -59.063 -9.726 25.568 0.74 46.14 ? O2 GDU 402 B 1 HETATM 8 O O4 GDU . . . H 4 -54.676 -8.912 26.402 0.74 50.88 ? O4 GDU 402 B 1 HETATM 9 C C1D GDU . . . H 4 -59.028 -12.263 26.612 0.74 43.99 ? C1D GDU 402 B 1 HETATM 10 C C2D GDU . . . H 4 -59.388 -12.833 25.237 0.74 44.62 ? C2D GDU 402 B 1 HETATM 11 O O2D GDU . . . H 4 -60.779 -13.127 25.157 0.74 43.42 ? O2D GDU 402 B 1 HETATM 12 C C3D GDU . . . H 4 -58.537 -14.102 25.215 0.74 49.97 ? C3D GDU 402 B 1 HETATM 13 C C4D GDU . . . H 4 -58.651 -14.579 26.658 0.74 52.83 ? C4D GDU 402 B 1 HETATM 14 O O4D GDU . . . H 4 -58.726 -13.37 27.447 0.74 52.77 ? O4D GDU 402 B 1 HETATM 15 O O3D GDU . . . H 4 -59.053 -15.072 24.312 0.74 45.39 ? O3D GDU 402 B 1 HETATM 16 C C5D GDU . . . H 4 -57.531 -15.457 27.162 0.74 44.15 ? C5D GDU 402 B 1 HETATM 17 O O5D GDU . . . H 4 -56.248 -14.927 26.761 0.74 44.37 ? O5D GDU 402 B 1 HETATM 18 P PA GDU . . . H 4 -55.397 -15.808 25.701 0.74 47.57 ? PA GDU 402 B 1 HETATM 19 O O1A GDU . . . H 4 -56.305 -16.208 24.607 0.74 47.6 ? O1A GDU 402 B 1 HETATM 20 O O2A GDU . . . H 4 -54.227 -14.945 25.242 0.74 50.05 ? O2A GDU 402 B 1 HETATM 21 O O3A GDU . . . H 4 -54.77 -17.055 26.472 0.74 42.86 ? O3A GDU 402 B 1 HETATM 22 P PB GDU . . . H 4 -54.646 -18.629 26.246 0.74 47.57 ? PB GDU 402 B 1 HETATM 23 O O1B GDU . . . H 4 -54.397 -19.015 24.84 0.74 51.19 ? O1B GDU 402 B 1 HETATM 24 O O2B GDU . . . H 4 -53.593 -19.147 27.219 0.74 55.44 ? O2B GDU 402 B 1 HETATM 25 O O3B GDU . . . H 4 -56.055 -19.168 26.759 0.74 58.09 ? O3B GDU 402 B 1 HETATM 26 C C1' GDU . . . H 4 -56.179 -20.208 27.69 0.74 50.6 ? C1' GDU 402 B 1 HETATM 27 C C2' GDU . . . H 4 -57.665 -20.486 27.841 0.74 45.07 ? C2' GDU 402 B 1 HETATM 28 C C3' GDU . . . H 4 -58.335 -19.218 28.34 0.74 46.98 ? C3' GDU 402 B 1 HETATM 29 C C4' GDU . . . H 4 -57.706 -18.778 29.653 0.74 47.61 ? C4' GDU 402 B 1 HETATM 30 C C5' GDU . . . H 4 -56.188 -18.667 29.52 0.74 47.69 ? C5' GDU 402 B 1 HETATM 31 C C6' GDU . . . H 4 -55.508 -18.476 30.855 0.74 46.56 ? C6' GDU 402 B 1 HETATM 32 O O2' GDU . . . H 4 -58.219 -20.886 26.594 0.74 44.62 ? O2' GDU 402 B 1 HETATM 33 O O3' GDU . . . H 4 -59.733 -19.431 28.504 0.74 44.32 ? O3' GDU 402 B 1 HETATM 34 O O4' GDU . . . H 4 -58.028 -19.703 30.684 0.74 45.75 ? O4' GDU 402 B 1 HETATM 35 O O5' GDU . . . H 4 -55.63 -19.865 28.949 0.74 51.13 ? O5' GDU 402 B 1 HETATM 36 O O6' GDU . . . H 4 -54.115 -18.243 30.704 0.74 51.08 ? O6' GDU 402 B 1 HETATM 37 H HN3 GDU . . . H 4 -56.964 -8.439 25.597 0.74 63.01 ? HN3 GDU 402 B 1 HETATM 38 H H5 GDU . . . H 4 -54.581 -11.358 27.44 0.74 60.28 ? H5 GDU 402 B 1 HETATM 39 H H6 GDU . . . H 4 -56.598 -12.805 27.501 0.74 60.4 ? H6 GDU 402 B 1 HETATM 40 H H1D GDU . . . H 4 -59.868 -11.73 27.055 0.74 52.79 ? H1D GDU 402 B 1 HETATM 41 H H2D GDU . . . H 4 -59.096 -12.183 24.413 0.74 53.55 ? H2D GDU 402 B 1 HETATM 42 H HO2' GDU . . . H 4 -61.252 -12.429 25.682 0.74 52.1 ? HO2' GDU 402 B 1 HETATM 43 H H3D GDU . . . H 4 -57.508 -13.895 24.922 0.74 59.96 ? H3D GDU 402 B 1 HETATM 44 H H4D GDU . . . H 4 -59.61 -15.062 26.84 0.74 63.4 ? H4D GDU 402 B 1 HETATM 45 H HO3' GDU . . . H 4 -58.464 -15.121 23.513 0.74 54.47 ? HO3' GDU 402 B 1 HETATM 46 H "H5'1" GDU . . . H 4 -57.566 -16.465 26.753 0.74 52.98 ? "H5'1" GDU 402 B 1 HETATM 47 H "H5'2" GDU . . . H 4 -57.637 -15.559 28.241 0.74 52.98 ? "H5'2" GDU 402 B 1 HETATM 48 H HOA2 GDU . . . H 4 -53.262 -15.002 25.469 0.74 60.07 ? HOA2 GDU 402 B 1 HETATM 49 H HOB2 GDU . . . H 4 -52.988 -19.934 27.213 0.74 66.53 ? HOB2 GDU 402 B 1 HETATM 50 H H1' GDU . . . H 4 -55.638 -21.101 27.379 0.74 60.72 ? H1' GDU 402 B 1 HETATM 51 H H2' GDU . . . H 4 -57.796 -21.25 28.605 0.74 54.09 ? H2' GDU 402 B 1 HETATM 52 H H3' GDU . . . H 4 -58.198 -18.428 27.603 0.74 56.38 ? H3' GDU 402 B 1 HETATM 53 H H4' GDU . . . H 4 -58.107 -17.801 29.918 0.74 57.14 ? H4' GDU 402 B 1 HETATM 54 H H5' GDU . . . H 4 -55.971 -17.804 28.892 0.74 57.23 ? H5' GDU 402 B 1 HETATM 55 H "H6'1" GDU . . . H 4 -55.966 -17.634 31.373 0.74 55.88 ? "H6'1" GDU 402 B 1 HETATM 56 H "H6'2" GDU . . . H 4 -55.669 -19.354 31.48 0.74 55.88 ? "H6'2" GDU 402 B 1 HETATM 57 H HO2A GDU . . . H 4 -58.864 -21.607 26.816 0.74 53.55 ? HO2A GDU 402 B 1 HETATM 58 H HO3A GDU . . . H 4 -59.973 -19.178 29.434 0.74 53.18 ? HO3A GDU 402 B 1 HETATM 59 H HO4' GDU . . . H 4 -58.692 -19.273 31.284 0.74 54.9 ? HO4' GDU 402 B 1 HETATM 60 H HO6' GDU . . . H 4 -53.705 -19.132 30.535 0.74 61.3 ? HO6' GDU 402 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 60 #