data_5NRF # _model_server_result.job_id U6yKvt0aogpWx72aCqZLQg _model_server_result.datetime_utc '2024-11-22 07:23:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nrf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5NRF # _exptl.entry_id 5NRF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NRF _cell.length_a 85.644 _cell.length_b 105.997 _cell.length_c 42.236 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 26 1_555 A SG CYS 30 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 286 A CYS 307 1_555 A SG CYS 349 A CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 188 n n C1 C2 GOL sing 189 n n C1 H11 GOL sing 190 n n C1 H12 GOL sing 191 n n O1 HO1 GOL sing 192 n n C2 O2 GOL sing 193 n n C2 C3 GOL sing 194 n n C2 H2 GOL sing 195 n n O2 HO2 GOL sing 196 n n C3 O3 GOL sing 197 n n C3 H31 GOL sing 198 n n C3 H32 GOL sing 199 n n O3 HO3 GOL sing 200 n n # _atom_sites.entry_id 5NRF _atom_sites.fract_transf_matrix[1][1] 0.011676 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009434 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023676 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 95Q A 1 401 900 95Q 7I0 . C 3 GOL A 1 402 1 GOL GOL . D 4 HOH A 1 501 98 HOH HOH . D 4 HOH A 2 502 167 HOH HOH . D 4 HOH A 3 503 79 HOH HOH . D 4 HOH A 4 504 126 HOH HOH . D 4 HOH A 5 505 17 HOH HOH . D 4 HOH A 6 506 42 HOH HOH . D 4 HOH A 7 507 124 HOH HOH . D 4 HOH A 8 508 198 HOH HOH . D 4 HOH A 9 509 51 HOH HOH . D 4 HOH A 10 510 22 HOH HOH . D 4 HOH A 11 511 96 HOH HOH . D 4 HOH A 12 512 72 HOH HOH . D 4 HOH A 13 513 172 HOH HOH . D 4 HOH A 14 514 156 HOH HOH . D 4 HOH A 15 515 24 HOH HOH . D 4 HOH A 16 516 135 HOH HOH . D 4 HOH A 17 517 11 HOH HOH . D 4 HOH A 18 518 45 HOH HOH . D 4 HOH A 19 519 111 HOH HOH . D 4 HOH A 20 520 149 HOH HOH . D 4 HOH A 21 521 157 HOH HOH . D 4 HOH A 22 522 148 HOH HOH . D 4 HOH A 23 523 23 HOH HOH . D 4 HOH A 24 524 40 HOH HOH . D 4 HOH A 25 525 140 HOH HOH . D 4 HOH A 26 526 39 HOH HOH . D 4 HOH A 27 527 28 HOH HOH . D 4 HOH A 28 528 188 HOH HOH . D 4 HOH A 29 529 6 HOH HOH . D 4 HOH A 30 530 194 HOH HOH . D 4 HOH A 31 531 76 HOH HOH . D 4 HOH A 32 532 63 HOH HOH . D 4 HOH A 33 533 132 HOH HOH . D 4 HOH A 34 534 183 HOH HOH . D 4 HOH A 35 535 105 HOH HOH . D 4 HOH A 36 536 29 HOH HOH . D 4 HOH A 37 537 8 HOH HOH . D 4 HOH A 38 538 33 HOH HOH . D 4 HOH A 39 539 131 HOH HOH . D 4 HOH A 40 540 53 HOH HOH . D 4 HOH A 41 541 203 HOH HOH . D 4 HOH A 42 542 41 HOH HOH . D 4 HOH A 43 543 25 HOH HOH . D 4 HOH A 44 544 19 HOH HOH . D 4 HOH A 45 545 107 HOH HOH . D 4 HOH A 46 546 147 HOH HOH . D 4 HOH A 47 547 161 HOH HOH . D 4 HOH A 48 548 38 HOH HOH . D 4 HOH A 49 549 153 HOH HOH . D 4 HOH A 50 550 82 HOH HOH . D 4 HOH A 51 551 77 HOH HOH . D 4 HOH A 52 552 118 HOH HOH . D 4 HOH A 53 553 69 HOH HOH . D 4 HOH A 54 554 177 HOH HOH . D 4 HOH A 55 555 134 HOH HOH . D 4 HOH A 56 556 90 HOH HOH . D 4 HOH A 57 557 145 HOH HOH . D 4 HOH A 58 558 26 HOH HOH . D 4 HOH A 59 559 142 HOH HOH . D 4 HOH A 60 560 37 HOH HOH . D 4 HOH A 61 561 64 HOH HOH . D 4 HOH A 62 562 184 HOH HOH . D 4 HOH A 63 563 54 HOH HOH . D 4 HOH A 64 564 95 HOH HOH . D 4 HOH A 65 565 137 HOH HOH . D 4 HOH A 66 566 127 HOH HOH . D 4 HOH A 67 567 160 HOH HOH . D 4 HOH A 68 568 176 HOH HOH . D 4 HOH A 69 569 174 HOH HOH . D 4 HOH A 70 570 35 HOH HOH . D 4 HOH A 71 571 81 HOH HOH . D 4 HOH A 72 572 34 HOH HOH . D 4 HOH A 73 573 58 HOH HOH . D 4 HOH A 74 574 27 HOH HOH . D 4 HOH A 75 575 10 HOH HOH . D 4 HOH A 76 576 130 HOH HOH . D 4 HOH A 77 577 89 HOH HOH . D 4 HOH A 78 578 102 HOH HOH . D 4 HOH A 79 579 125 HOH HOH . D 4 HOH A 80 580 83 HOH HOH . D 4 HOH A 81 581 70 HOH HOH . D 4 HOH A 82 582 13 HOH HOH . D 4 HOH A 83 583 9 HOH HOH . D 4 HOH A 84 584 62 HOH HOH . D 4 HOH A 85 585 171 HOH HOH . D 4 HOH A 86 586 104 HOH HOH . D 4 HOH A 87 587 97 HOH HOH . D 4 HOH A 88 588 56 HOH HOH . D 4 HOH A 89 589 146 HOH HOH . D 4 HOH A 90 590 187 HOH HOH . D 4 HOH A 91 591 179 HOH HOH . D 4 HOH A 92 592 173 HOH HOH . D 4 HOH A 93 593 86 HOH HOH . D 4 HOH A 94 594 2 HOH HOH . D 4 HOH A 95 595 100 HOH HOH . D 4 HOH A 96 596 108 HOH HOH . D 4 HOH A 97 597 152 HOH HOH . D 4 HOH A 98 598 65 HOH HOH . D 4 HOH A 99 599 141 HOH HOH . D 4 HOH A 100 600 75 HOH HOH . D 4 HOH A 101 601 7 HOH HOH . D 4 HOH A 102 602 52 HOH HOH . D 4 HOH A 103 603 3 HOH HOH . D 4 HOH A 104 604 46 HOH HOH . D 4 HOH A 105 605 109 HOH HOH . D 4 HOH A 106 606 101 HOH HOH . D 4 HOH A 107 607 122 HOH HOH . D 4 HOH A 108 608 185 HOH HOH . D 4 HOH A 109 609 74 HOH HOH . D 4 HOH A 110 610 154 HOH HOH . D 4 HOH A 111 611 48 HOH HOH . D 4 HOH A 112 612 139 HOH HOH . D 4 HOH A 113 613 121 HOH HOH . D 4 HOH A 114 614 114 HOH HOH . D 4 HOH A 115 615 128 HOH HOH . D 4 HOH A 116 616 4 HOH HOH . D 4 HOH A 117 617 30 HOH HOH . D 4 HOH A 118 618 16 HOH HOH . D 4 HOH A 119 619 182 HOH HOH . D 4 HOH A 120 620 159 HOH HOH . D 4 HOH A 121 621 170 HOH HOH . D 4 HOH A 122 622 192 HOH HOH . D 4 HOH A 123 623 123 HOH HOH . D 4 HOH A 124 624 144 HOH HOH . D 4 HOH A 125 625 21 HOH HOH . D 4 HOH A 126 626 20 HOH HOH . D 4 HOH A 127 627 112 HOH HOH . D 4 HOH A 128 628 15 HOH HOH . D 4 HOH A 129 629 66 HOH HOH . D 4 HOH A 130 630 178 HOH HOH . D 4 HOH A 131 631 113 HOH HOH . D 4 HOH A 132 632 193 HOH HOH . D 4 HOH A 133 633 59 HOH HOH . D 4 HOH A 134 634 43 HOH HOH . D 4 HOH A 135 635 116 HOH HOH . D 4 HOH A 136 636 85 HOH HOH . D 4 HOH A 137 637 169 HOH HOH . D 4 HOH A 138 638 31 HOH HOH . D 4 HOH A 139 639 61 HOH HOH . D 4 HOH A 140 640 12 HOH HOH . D 4 HOH A 141 641 201 HOH HOH . D 4 HOH A 142 642 36 HOH HOH . D 4 HOH A 143 643 78 HOH HOH . D 4 HOH A 144 644 67 HOH HOH . D 4 HOH A 145 645 87 HOH HOH . D 4 HOH A 146 646 162 HOH HOH . D 4 HOH A 147 647 5 HOH HOH . D 4 HOH A 148 648 202 HOH HOH . D 4 HOH A 149 649 94 HOH HOH . D 4 HOH A 150 650 196 HOH HOH . D 4 HOH A 151 651 57 HOH HOH . D 4 HOH A 152 652 151 HOH HOH . D 4 HOH A 153 653 158 HOH HOH . D 4 HOH A 154 654 117 HOH HOH . D 4 HOH A 155 655 92 HOH HOH . D 4 HOH A 156 656 186 HOH HOH . D 4 HOH A 157 657 133 HOH HOH . D 4 HOH A 158 658 73 HOH HOH . D 4 HOH A 159 659 14 HOH HOH . D 4 HOH A 160 660 150 HOH HOH . D 4 HOH A 161 661 115 HOH HOH . D 4 HOH A 162 662 93 HOH HOH . D 4 HOH A 163 663 99 HOH HOH . D 4 HOH A 164 664 68 HOH HOH . D 4 HOH A 165 665 32 HOH HOH . D 4 HOH A 166 666 49 HOH HOH . D 4 HOH A 167 667 18 HOH HOH . D 4 HOH A 168 668 166 HOH HOH . D 4 HOH A 169 669 50 HOH HOH . D 4 HOH A 170 670 55 HOH HOH . D 4 HOH A 171 671 44 HOH HOH . D 4 HOH A 172 672 103 HOH HOH . D 4 HOH A 173 673 80 HOH HOH . D 4 HOH A 174 674 47 HOH HOH . D 4 HOH A 175 675 155 HOH HOH . D 4 HOH A 176 676 110 HOH HOH . D 4 HOH A 177 677 71 HOH HOH . D 4 HOH A 178 678 199 HOH HOH . D 4 HOH A 179 679 195 HOH HOH . D 4 HOH A 180 680 200 HOH HOH . D 4 HOH A 181 681 106 HOH HOH . D 4 HOH A 182 682 136 HOH HOH . D 4 HOH A 183 683 129 HOH HOH . D 4 HOH A 184 684 181 HOH HOH . D 4 HOH A 185 685 119 HOH HOH . D 4 HOH A 186 686 138 HOH HOH . D 4 HOH A 187 687 165 HOH HOH . D 4 HOH A 188 688 189 HOH HOH . D 4 HOH A 189 689 180 HOH HOH . D 4 HOH A 190 690 164 HOH HOH . D 4 HOH A 191 691 163 HOH HOH . D 4 HOH A 192 692 143 HOH HOH . D 4 HOH A 193 693 168 HOH HOH . D 4 HOH A 194 694 191 HOH HOH . D 4 HOH A 195 695 175 HOH HOH . D 4 HOH A 196 696 88 HOH HOH . D 4 HOH A 197 697 60 HOH HOH . D 4 HOH A 198 698 84 HOH HOH . D 4 HOH A 199 699 120 HOH HOH . D 4 HOH A 200 700 197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . A . C 3 102.092 30.138 26.432 0.4 29.69 ? C1 GOL 402 A 1 HETATM 2 C C1 GOL . B . C 3 102.663 30.717 27.066 0.56 26.82 ? C1 GOL 402 A 1 HETATM 3 O O1 GOL . A . C 3 100.976 29.33 26.134 0.4 31.89 ? O1 GOL 402 A 1 HETATM 4 O O1 GOL . B . C 3 101.406 30.112 26.866 0.56 29.25 ? O1 GOL 402 A 1 HETATM 5 C C2 GOL . A . C 3 102.748 30.566 25.122 0.4 27.45 ? C2 GOL 402 A 1 HETATM 6 C C2 GOL . B . C 3 103.519 30.496 25.825 0.56 21.91 ? C2 GOL 402 A 1 HETATM 7 O O2 GOL . A . C 3 104.094 30.944 25.341 0.4 26.5 ? O2 GOL 402 A 1 HETATM 8 O O2 GOL . B . C 3 104.43 29.45 26.09 0.56 19.56 ? O2 GOL 402 A 1 HETATM 9 C C3 GOL . A . C 3 102.655 29.381 24.168 0.4 26.6 ? C3 GOL 402 A 1 HETATM 10 C C3 GOL . B . C 3 102.572 30.117 24.694 0.56 14.98 ? C3 GOL 402 A 1 HETATM 11 O O3 GOL . A . C 3 103.71 29.397 23.248 0.4 27.81 ? O3 GOL 402 A 1 HETATM 12 O O3 GOL . B . C 3 103.218 29.309 23.747 0.56 8 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 451 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 428 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #