data_5NRM # _model_server_result.job_id HF9Vt0qvXypFS_OcFfwmUw _model_server_result.datetime_utc '2025-03-22 19:02:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nrm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 5NRM # _exptl.entry_id 5NRM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.88 _cell.angle_gamma 90 _cell.entry_id 5NRM _cell.length_a 30.49 _cell.length_b 59.95 _cell.length_c 51.26 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NRM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 4 B ASP 7 1_555 C CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 B OD1 ASP 6 B ASP 9 1_555 C CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc3 B OD1 ASN 8 B ASN 11 1_555 C CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc4 B O SER 10 B SER 13 1_555 C CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc5 B OD1 ASP 15 B ASP 18 1_555 C CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc6 B OD2 ASP 15 B ASP 18 1_555 C CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc7 B OD1 ASP 29 B ASP 32 1_555 E CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc8 B O PHE 30 B PHE 33 1_555 E CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc9 B O ALA 32 B ALA 35 1_555 E CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc10 B OD1 ASP 35 B ASP 38 1_555 E CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc11 B OD1 ASP 40 B ASP 43 1_555 D CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc12 B OD1 ASN 42 B ASN 45 1_555 D CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc13 B OD1 ASP 44 B ASP 47 1_555 D CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc14 B O SER 46 B SER 49 1_555 D CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc15 B OD1 ASP 51 B ASP 54 1_555 D CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc16 B OD2 ASP 51 B ASP 54 1_555 D CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc17 C CA CA . B CA 101 1_555 G O HOH . B HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc18 D CA CA . B CA 102 1_555 G O HOH . B HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc19 E CA CA . B CA 103 1_555 G O HOH . B HOH 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc20 E CA CA . B CA 103 1_555 G O HOH . B HOH 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NRM _atom_sites.fract_transf_matrix[1][1] 0.032798 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009952 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA B 1 101 1 CA CA . D 3 CA B 1 102 2 CA CA . E 3 CA B 1 103 3 CA CA . F 4 HOH A 1 201 143 HOH HOH . F 4 HOH A 2 202 222 HOH HOH . F 4 HOH A 3 203 135 HOH HOH . F 4 HOH A 4 204 102 HOH HOH . F 4 HOH A 5 205 192 HOH HOH . F 4 HOH A 6 206 165 HOH HOH . F 4 HOH A 7 207 35 HOH HOH . F 4 HOH A 8 208 48 HOH HOH . F 4 HOH A 9 209 157 HOH HOH . F 4 HOH A 10 210 23 HOH HOH . F 4 HOH A 11 211 125 HOH HOH . F 4 HOH A 12 212 26 HOH HOH . F 4 HOH A 13 213 181 HOH HOH . F 4 HOH A 14 214 131 HOH HOH . F 4 HOH A 15 215 218 HOH HOH . F 4 HOH A 16 216 97 HOH HOH . F 4 HOH A 17 217 34 HOH HOH . F 4 HOH A 18 218 217 HOH HOH . F 4 HOH A 19 219 91 HOH HOH . F 4 HOH A 20 220 146 HOH HOH . F 4 HOH A 21 221 155 HOH HOH . F 4 HOH A 22 222 236 HOH HOH . F 4 HOH A 23 223 170 HOH HOH . F 4 HOH A 24 224 145 HOH HOH . F 4 HOH A 25 225 130 HOH HOH . F 4 HOH A 26 226 67 HOH HOH . F 4 HOH A 27 227 98 HOH HOH . F 4 HOH A 28 228 134 HOH HOH . F 4 HOH A 29 229 154 HOH HOH . F 4 HOH A 30 230 199 HOH HOH . F 4 HOH A 31 231 41 HOH HOH . F 4 HOH A 32 232 149 HOH HOH . F 4 HOH A 33 233 175 HOH HOH . F 4 HOH A 34 234 22 HOH HOH . F 4 HOH A 35 235 132 HOH HOH . F 4 HOH A 36 236 176 HOH HOH . F 4 HOH A 37 237 183 HOH HOH . F 4 HOH A 38 238 95 HOH HOH . F 4 HOH A 39 239 82 HOH HOH . F 4 HOH A 40 240 153 HOH HOH . F 4 HOH A 41 241 191 HOH HOH . F 4 HOH A 42 242 152 HOH HOH . F 4 HOH A 43 243 51 HOH HOH . F 4 HOH A 44 244 36 HOH HOH . F 4 HOH A 45 245 174 HOH HOH . F 4 HOH A 46 246 180 HOH HOH . F 4 HOH A 47 247 15 HOH HOH . F 4 HOH A 48 248 2 HOH HOH . F 4 HOH A 49 249 163 HOH HOH . F 4 HOH A 50 250 127 HOH HOH . F 4 HOH A 51 251 160 HOH HOH . F 4 HOH A 52 252 11 HOH HOH . F 4 HOH A 53 253 62 HOH HOH . F 4 HOH A 54 254 38 HOH HOH . F 4 HOH A 55 255 243 HOH HOH . F 4 HOH A 56 256 150 HOH HOH . F 4 HOH A 57 257 7 HOH HOH . F 4 HOH A 58 258 109 HOH HOH . F 4 HOH A 59 259 158 HOH HOH . F 4 HOH A 60 260 193 HOH HOH . F 4 HOH A 61 261 6 HOH HOH . F 4 HOH A 62 262 194 HOH HOH . F 4 HOH A 63 263 124 HOH HOH . F 4 HOH A 64 264 12 HOH HOH . F 4 HOH A 65 265 233 HOH HOH . F 4 HOH A 66 266 50 HOH HOH . F 4 HOH A 67 267 156 HOH HOH . F 4 HOH A 68 268 88 HOH HOH . F 4 HOH A 69 269 70 HOH HOH . F 4 HOH A 70 270 63 HOH HOH . F 4 HOH A 71 271 108 HOH HOH . F 4 HOH A 72 272 172 HOH HOH . F 4 HOH A 73 273 56 HOH HOH . F 4 HOH A 74 274 8 HOH HOH . F 4 HOH A 75 275 182 HOH HOH . F 4 HOH A 76 276 33 HOH HOH . F 4 HOH A 77 277 148 HOH HOH . F 4 HOH A 78 278 44 HOH HOH . F 4 HOH A 79 279 257 HOH HOH . F 4 HOH A 80 280 30 HOH HOH . F 4 HOH A 81 281 198 HOH HOH . F 4 HOH A 82 282 9 HOH HOH . F 4 HOH A 83 283 169 HOH HOH . F 4 HOH A 84 284 159 HOH HOH . F 4 HOH A 85 285 235 HOH HOH . F 4 HOH A 86 286 139 HOH HOH . F 4 HOH A 87 287 258 HOH HOH . F 4 HOH A 88 288 188 HOH HOH . F 4 HOH A 89 289 100 HOH HOH . F 4 HOH A 90 290 133 HOH HOH . F 4 HOH A 91 291 221 HOH HOH . F 4 HOH A 92 292 167 HOH HOH . F 4 HOH A 93 293 80 HOH HOH . F 4 HOH A 94 294 229 HOH HOH . F 4 HOH A 95 295 189 HOH HOH . F 4 HOH A 96 296 151 HOH HOH . F 4 HOH A 97 297 4 HOH HOH . F 4 HOH A 98 298 55 HOH HOH . F 4 HOH A 99 299 178 HOH HOH . F 4 HOH A 100 300 45 HOH HOH . F 4 HOH A 101 301 94 HOH HOH . F 4 HOH A 102 302 10 HOH HOH . F 4 HOH A 103 303 201 HOH HOH . F 4 HOH A 104 304 73 HOH HOH . F 4 HOH A 105 305 79 HOH HOH . F 4 HOH A 106 306 17 HOH HOH . F 4 HOH A 107 307 206 HOH HOH . F 4 HOH A 108 308 123 HOH HOH . F 4 HOH A 109 309 90 HOH HOH . F 4 HOH A 110 310 214 HOH HOH . F 4 HOH A 111 311 37 HOH HOH . F 4 HOH A 112 312 144 HOH HOH . F 4 HOH A 113 313 177 HOH HOH . F 4 HOH A 114 314 59 HOH HOH . F 4 HOH A 115 315 14 HOH HOH . F 4 HOH A 116 316 105 HOH HOH . F 4 HOH A 117 317 24 HOH HOH . F 4 HOH A 118 318 126 HOH HOH . F 4 HOH A 119 319 166 HOH HOH . F 4 HOH A 120 320 147 HOH HOH . F 4 HOH A 121 321 40 HOH HOH . F 4 HOH A 122 322 136 HOH HOH . F 4 HOH A 123 323 46 HOH HOH . F 4 HOH A 124 324 187 HOH HOH . F 4 HOH A 125 325 230 HOH HOH . F 4 HOH A 126 326 250 HOH HOH . F 4 HOH A 127 327 224 HOH HOH . F 4 HOH A 128 328 168 HOH HOH . F 4 HOH A 129 329 69 HOH HOH . F 4 HOH A 130 330 238 HOH HOH . F 4 HOH A 131 331 185 HOH HOH . F 4 HOH A 132 332 89 HOH HOH . F 4 HOH A 133 333 197 HOH HOH . F 4 HOH A 134 334 31 HOH HOH . F 4 HOH A 135 335 226 HOH HOH . F 4 HOH A 136 336 13 HOH HOH . F 4 HOH A 137 337 162 HOH HOH . F 4 HOH A 138 338 225 HOH HOH . F 4 HOH A 139 339 220 HOH HOH . F 4 HOH A 140 340 71 HOH HOH . F 4 HOH A 141 341 246 HOH HOH . F 4 HOH A 142 342 216 HOH HOH . F 4 HOH A 143 343 255 HOH HOH . F 4 HOH A 144 344 247 HOH HOH . F 4 HOH A 145 345 60 HOH HOH . F 4 HOH A 146 346 66 HOH HOH . F 4 HOH A 147 347 140 HOH HOH . F 4 HOH A 148 348 263 HOH HOH . F 4 HOH A 149 349 171 HOH HOH . F 4 HOH A 150 350 210 HOH HOH . F 4 HOH A 151 351 87 HOH HOH . F 4 HOH A 152 352 241 HOH HOH . F 4 HOH A 153 353 212 HOH HOH . F 4 HOH A 154 354 254 HOH HOH . F 4 HOH A 155 355 232 HOH HOH . F 4 HOH A 156 356 86 HOH HOH . G 4 HOH B 1 201 207 HOH HOH . G 4 HOH B 2 202 161 HOH HOH . G 4 HOH B 3 203 81 HOH HOH . G 4 HOH B 4 204 101 HOH HOH . G 4 HOH B 5 205 227 HOH HOH . G 4 HOH B 6 206 53 HOH HOH . G 4 HOH B 7 207 76 HOH HOH . G 4 HOH B 8 208 72 HOH HOH . G 4 HOH B 9 209 58 HOH HOH . G 4 HOH B 10 210 64 HOH HOH . G 4 HOH B 11 211 16 HOH HOH . G 4 HOH B 12 212 1 HOH HOH . G 4 HOH B 13 213 61 HOH HOH . G 4 HOH B 14 214 52 HOH HOH . G 4 HOH B 15 215 27 HOH HOH . G 4 HOH B 16 216 3 HOH HOH . G 4 HOH B 17 217 49 HOH HOH . G 4 HOH B 18 218 84 HOH HOH . G 4 HOH B 19 219 196 HOH HOH . G 4 HOH B 20 220 200 HOH HOH . G 4 HOH B 21 221 195 HOH HOH . G 4 HOH B 22 222 18 HOH HOH . G 4 HOH B 23 223 5 HOH HOH . G 4 HOH B 24 224 25 HOH HOH . G 4 HOH B 25 225 39 HOH HOH . G 4 HOH B 26 226 32 HOH HOH . G 4 HOH B 27 227 29 HOH HOH . G 4 HOH B 28 228 96 HOH HOH . G 4 HOH B 29 229 54 HOH HOH . G 4 HOH B 30 230 21 HOH HOH . G 4 HOH B 31 231 211 HOH HOH . G 4 HOH B 32 232 43 HOH HOH . G 4 HOH B 33 233 74 HOH HOH . G 4 HOH B 34 234 219 HOH HOH . G 4 HOH B 35 235 113 HOH HOH . G 4 HOH B 36 236 104 HOH HOH . G 4 HOH B 37 237 68 HOH HOH . G 4 HOH B 38 238 129 HOH HOH . G 4 HOH B 39 239 57 HOH HOH . G 4 HOH B 40 240 112 HOH HOH . G 4 HOH B 41 241 213 HOH HOH . G 4 HOH B 42 242 93 HOH HOH . G 4 HOH B 43 243 92 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -24.344 _atom_site.Cartn_y -49.888 _atom_site.Cartn_z 63.721 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 8.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #