data_5NRP
#
_model_server_result.job_id            0YBrsxBvSS_DyokR1fqHrQ 
_model_server_result.datetime_utc      '2025-07-26 19:39:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nrp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    5NRP 
#
_exptl.entry_id    5NRP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              26.017 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CYANIDE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5NRP 
_cell.length_a            59.859 
_cell.length_b            59.859 
_cell.length_c            70.114 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NRP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 4 A HIS 305 1_555 C CO CBY . A CBY 502 3_775 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? 
metalc ? metalc2 A NE2 HIS 44 A HIS 345 1_555 B CO CBY . A CBY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
#
_chem_comp.formula           'C N -1' 
_chem_comp.formula_weight    26.017 
_chem_comp.id                CYN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CYANIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_chem_comp_bond.atom_id_1             C 
_chem_comp_bond.atom_id_2             N 
_chem_comp_bond.comp_id               CYN 
_chem_comp_bond.value_order           trip 
_chem_comp_bond.pdbx_ordinal          217 
_chem_comp_bond.pdbx_stereo_config    n 
_chem_comp_bond.pdbx_aromatic_flag    n 
#
_atom_sites.entry_id                     5NRP 
_atom_sites.fract_transf_matrix[1][1]    0.016706 
_atom_sites.fract_transf_matrix[1][2]    0.009645 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01929 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014262 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CBY A 1 501 301 CBY CBY . 
C 2 CBY A 1 502 302 CBY CBY . 
D 3 CYN A 1 503 302 CYN CYN . 
E 4 HOH A 1 601 16 HOH HOH . 
E 4 HOH A 2 602 15 HOH HOH . 
E 4 HOH A 3 603 6 HOH HOH . 
E 4 HOH A 4 604 26 HOH HOH . 
E 4 HOH A 5 605 8 HOH HOH . 
E 4 HOH A 6 606 58 HOH HOH . 
E 4 HOH A 7 607 2 HOH HOH . 
E 4 HOH A 8 608 14 HOH HOH . 
E 4 HOH A 9 609 10 HOH HOH . 
E 4 HOH A 10 610 9 HOH HOH . 
E 4 HOH A 11 611 30 HOH HOH . 
E 4 HOH A 12 612 17 HOH HOH . 
E 4 HOH A 13 613 11 HOH HOH . 
E 4 HOH A 14 614 77 HOH HOH . 
E 4 HOH A 15 615 36 HOH HOH . 
E 4 HOH A 16 616 3 HOH HOH . 
E 4 HOH A 17 617 59 HOH HOH . 
E 4 HOH A 18 618 27 HOH HOH . 
E 4 HOH A 19 619 43 HOH HOH . 
E 4 HOH A 20 620 23 HOH HOH . 
E 4 HOH A 21 621 19 HOH HOH . 
E 4 HOH A 22 622 40 HOH HOH . 
E 4 HOH A 23 623 67 HOH HOH . 
E 4 HOH A 24 624 5 HOH HOH . 
E 4 HOH A 25 625 29 HOH HOH . 
E 4 HOH A 26 626 57 HOH HOH . 
E 4 HOH A 27 627 63 HOH HOH . 
E 4 HOH A 28 628 44 HOH HOH . 
E 4 HOH A 29 629 62 HOH HOH . 
E 4 HOH A 30 630 4 HOH HOH . 
E 4 HOH A 31 631 45 HOH HOH . 
E 4 HOH A 32 632 51 HOH HOH . 
E 4 HOH A 33 633 39 HOH HOH . 
E 4 HOH A 34 634 13 HOH HOH . 
E 4 HOH A 35 635 35 HOH HOH . 
E 4 HOH A 36 636 69 HOH HOH . 
E 4 HOH A 37 637 12 HOH HOH . 
E 4 HOH A 38 638 28 HOH HOH . 
E 4 HOH A 39 639 37 HOH HOH . 
E 4 HOH A 40 640 65 HOH HOH . 
E 4 HOH A 41 641 22 HOH HOH . 
E 4 HOH A 42 642 1 HOH HOH . 
E 4 HOH A 43 643 49 HOH HOH . 
E 4 HOH A 44 644 41 HOH HOH . 
E 4 HOH A 45 645 25 HOH HOH . 
E 4 HOH A 46 646 31 HOH HOH . 
E 4 HOH A 47 647 7 HOH HOH . 
E 4 HOH A 48 648 24 HOH HOH . 
E 4 HOH A 49 649 53 HOH HOH . 
E 4 HOH A 50 650 74 HOH HOH . 
E 4 HOH A 51 651 42 HOH HOH . 
E 4 HOH A 52 652 52 HOH HOH . 
E 4 HOH A 53 653 21 HOH HOH . 
E 4 HOH A 54 654 60 HOH HOH . 
E 4 HOH A 55 655 38 HOH HOH . 
E 4 HOH A 56 656 33 HOH HOH . 
E 4 HOH A 57 657 54 HOH HOH . 
E 4 HOH A 58 658 20 HOH HOH . 
E 4 HOH A 59 659 68 HOH HOH . 
E 4 HOH A 60 660 76 HOH HOH . 
E 4 HOH A 61 661 32 HOH HOH . 
E 4 HOH A 62 662 50 HOH HOH . 
E 4 HOH A 63 663 71 HOH HOH . 
E 4 HOH A 64 664 55 HOH HOH . 
E 4 HOH A 65 665 18 HOH HOH . 
E 4 HOH A 66 666 73 HOH HOH . 
E 4 HOH A 67 667 81 HOH HOH . 
E 4 HOH A 68 668 82 HOH HOH . 
E 4 HOH A 69 669 70 HOH HOH . 
E 4 HOH A 70 670 78 HOH HOH . 
E 4 HOH A 71 671 48 HOH HOH . 
E 4 HOH A 72 672 64 HOH HOH . 
E 4 HOH A 73 673 79 HOH HOH . 
E 4 HOH A 74 674 66 HOH HOH . 
E 4 HOH A 75 675 34 HOH HOH . 
E 4 HOH A 76 676 46 HOH HOH . 
E 4 HOH A 77 677 61 HOH HOH . 
E 4 HOH A 78 678 72 HOH HOH . 
E 4 HOH A 79 679 56 HOH HOH . 
E 4 HOH A 80 680 83 HOH HOH . 
E 4 HOH A 81 681 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C CYN . . . D 3 60.361 28.448 -3.078 1 46.42 ? C CYN 503 A 1 
HETATM 2 N N CYN . . . D 3 60.127 29.107 -4.003 1 51.63 ? N CYN 503 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           2 
#