data_5NRQ # _model_server_result.job_id fkU_nVWGl6WjUZ746_3hIg _model_server_result.datetime_utc '2024-10-19 22:38:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nrq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5NRQ # _exptl.entry_id 5NRQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.896 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[1-[[5-(3-chloranylphenoxy)pyridin-3-yl]methyl]piperidin-4-yl]-5-methyl-pyrimidine-2,4-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5NRQ _cell.length_a 73.85 _cell.length_b 73.85 _cell.length_c 72.35 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NRQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C22 H23 Cl N4 O3' _chem_comp.formula_weight 426.896 _chem_comp.id ZUI _chem_comp.mon_nstd_flag . _chem_comp.name 1-[1-[[5-(3-chloranylphenoxy)pyridin-3-yl]methyl]piperidin-4-yl]-5-methyl-pyrimidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C21 ZUI doub 376 n n C21 N3 ZUI sing 377 n n C21 C1 ZUI sing 378 n n N3 C20 ZUI sing 379 n n C C1 ZUI sing 380 n n C1 C2 ZUI doub 381 n n C20 O1 ZUI doub 382 n n C20 N ZUI sing 383 n n C2 N ZUI sing 384 n n N C3 ZUI sing 385 n n C19 C3 ZUI sing 386 n n C19 C18 ZUI sing 387 n n C3 C4 ZUI sing 388 n n C18 N1 ZUI sing 389 n n N2 C8 ZUI doub 390 n y N2 C9 ZUI sing 391 n y C8 C7 ZUI sing 392 n y C9 C10 ZUI doub 393 n y C4 C5 ZUI sing 394 n n CL C15 ZUI sing 395 n n N1 C5 ZUI sing 396 n n N1 C6 ZUI sing 397 n n C7 C6 ZUI sing 398 n n C7 C17 ZUI doub 399 n y C10 C17 ZUI sing 400 n y C10 O ZUI sing 401 n n C16 C15 ZUI doub 402 n y C16 C11 ZUI sing 403 n y C15 C14 ZUI sing 404 n y O C11 ZUI sing 405 n n C11 C12 ZUI doub 406 n y C14 C13 ZUI doub 407 n y C12 C13 ZUI sing 408 n y C H3 ZUI sing 409 n n C H1 ZUI sing 410 n n C H2 ZUI sing 411 n n N3 H ZUI sing 412 n n C2 H4 ZUI sing 413 n n C3 H5 ZUI sing 414 n n C19 H22 ZUI sing 415 n n C19 H21 ZUI sing 416 n n C18 H20 ZUI sing 417 n n C18 H19 ZUI sing 418 n n C5 H8 ZUI sing 419 n n C5 H9 ZUI sing 420 n n C4 H6 ZUI sing 421 n n C4 H7 ZUI sing 422 n n C6 H10 ZUI sing 423 n n C6 H11 ZUI sing 424 n n C17 H18 ZUI sing 425 n n C9 H13 ZUI sing 426 n n C8 H12 ZUI sing 427 n n C16 H17 ZUI sing 428 n n C14 H16 ZUI sing 429 n n C13 H15 ZUI sing 430 n n C12 H14 ZUI sing 431 n n # _atom_sites.entry_id 5NRQ _atom_sites.fract_transf_matrix[1][1] 0.013541 _atom_sites.fract_transf_matrix[1][2] 0.007818 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013822 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZUI A 1 301 1 ZUI ZUI . D 3 CL A 1 302 1 CL CL . E 3 CL A 1 303 3 CL CL . F 3 CL A 1 304 4 CL CL . G 2 ZUI B 1 301 2 ZUI ZUI . H 3 CL B 1 302 2 CL CL . I 4 HOH A 1 401 108 HOH HOH . I 4 HOH A 2 402 109 HOH HOH . I 4 HOH A 3 403 40 HOH HOH . I 4 HOH A 4 404 104 HOH HOH . I 4 HOH A 5 405 96 HOH HOH . I 4 HOH A 6 406 12 HOH HOH . I 4 HOH A 7 407 51 HOH HOH . I 4 HOH A 8 408 71 HOH HOH . I 4 HOH A 9 409 31 HOH HOH . I 4 HOH A 10 410 87 HOH HOH . I 4 HOH A 11 411 53 HOH HOH . I 4 HOH A 12 412 92 HOH HOH . I 4 HOH A 13 413 62 HOH HOH . I 4 HOH A 14 414 45 HOH HOH . I 4 HOH A 15 415 65 HOH HOH . I 4 HOH A 16 416 73 HOH HOH . I 4 HOH A 17 417 34 HOH HOH . I 4 HOH A 18 418 57 HOH HOH . I 4 HOH A 19 419 93 HOH HOH . I 4 HOH A 20 420 37 HOH HOH . I 4 HOH A 21 421 74 HOH HOH . I 4 HOH A 22 422 107 HOH HOH . I 4 HOH A 23 423 106 HOH HOH . I 4 HOH A 24 424 27 HOH HOH . I 4 HOH A 25 425 14 HOH HOH . I 4 HOH A 26 426 22 HOH HOH . I 4 HOH A 27 427 26 HOH HOH . I 4 HOH A 28 428 21 HOH HOH . I 4 HOH A 29 429 6 HOH HOH . I 4 HOH A 30 430 41 HOH HOH . I 4 HOH A 31 431 15 HOH HOH . I 4 HOH A 32 432 82 HOH HOH . I 4 HOH A 33 433 7 HOH HOH . I 4 HOH A 34 434 38 HOH HOH . I 4 HOH A 35 435 98 HOH HOH . I 4 HOH A 36 436 11 HOH HOH . I 4 HOH A 37 437 122 HOH HOH . I 4 HOH A 38 438 64 HOH HOH . I 4 HOH A 39 439 90 HOH HOH . I 4 HOH A 40 440 94 HOH HOH . I 4 HOH A 41 441 9 HOH HOH . I 4 HOH A 42 442 69 HOH HOH . I 4 HOH A 43 443 35 HOH HOH . I 4 HOH A 44 444 30 HOH HOH . I 4 HOH A 45 445 72 HOH HOH . I 4 HOH A 46 446 105 HOH HOH . I 4 HOH A 47 447 86 HOH HOH . I 4 HOH A 48 448 61 HOH HOH . I 4 HOH A 49 449 16 HOH HOH . I 4 HOH A 50 450 101 HOH HOH . I 4 HOH A 51 451 54 HOH HOH . I 4 HOH A 52 452 84 HOH HOH . I 4 HOH A 53 453 63 HOH HOH . I 4 HOH A 54 454 118 HOH HOH . I 4 HOH A 55 455 77 HOH HOH . I 4 HOH A 56 456 17 HOH HOH . I 4 HOH A 57 457 75 HOH HOH . I 4 HOH A 58 458 28 HOH HOH . I 4 HOH A 59 459 102 HOH HOH . I 4 HOH A 60 460 29 HOH HOH . I 4 HOH A 61 461 13 HOH HOH . I 4 HOH A 62 462 48 HOH HOH . I 4 HOH A 63 463 95 HOH HOH . I 4 HOH A 64 464 33 HOH HOH . I 4 HOH A 65 465 20 HOH HOH . I 4 HOH A 66 466 79 HOH HOH . I 4 HOH A 67 467 23 HOH HOH . I 4 HOH A 68 468 81 HOH HOH . I 4 HOH A 69 469 5 HOH HOH . I 4 HOH A 70 470 58 HOH HOH . I 4 HOH A 71 471 97 HOH HOH . I 4 HOH A 72 472 91 HOH HOH . I 4 HOH A 73 473 103 HOH HOH . I 4 HOH A 74 474 56 HOH HOH . I 4 HOH A 75 475 39 HOH HOH . I 4 HOH A 76 476 100 HOH HOH . I 4 HOH A 77 477 99 HOH HOH . I 4 HOH A 78 478 67 HOH HOH . I 4 HOH A 79 479 59 HOH HOH . I 4 HOH A 80 480 80 HOH HOH . I 4 HOH A 81 481 68 HOH HOH . I 4 HOH A 82 482 1 HOH HOH . J 4 HOH B 1 401 115 HOH HOH . J 4 HOH B 2 402 4 HOH HOH . J 4 HOH B 3 403 32 HOH HOH . J 4 HOH B 4 404 46 HOH HOH . J 4 HOH B 5 405 78 HOH HOH . J 4 HOH B 6 406 114 HOH HOH . J 4 HOH B 7 407 111 HOH HOH . J 4 HOH B 8 408 8 HOH HOH . J 4 HOH B 9 409 10 HOH HOH . J 4 HOH B 10 410 36 HOH HOH . J 4 HOH B 11 411 76 HOH HOH . J 4 HOH B 12 412 120 HOH HOH . J 4 HOH B 13 413 66 HOH HOH . J 4 HOH B 14 414 50 HOH HOH . J 4 HOH B 15 415 116 HOH HOH . J 4 HOH B 16 416 119 HOH HOH . J 4 HOH B 17 417 89 HOH HOH . J 4 HOH B 18 418 19 HOH HOH . J 4 HOH B 19 419 44 HOH HOH . J 4 HOH B 20 420 112 HOH HOH . J 4 HOH B 21 421 43 HOH HOH . J 4 HOH B 22 422 85 HOH HOH . J 4 HOH B 23 423 83 HOH HOH . J 4 HOH B 24 424 60 HOH HOH . J 4 HOH B 25 425 88 HOH HOH . J 4 HOH B 26 426 25 HOH HOH . J 4 HOH B 27 427 47 HOH HOH . J 4 HOH B 28 428 110 HOH HOH . J 4 HOH B 29 429 2 HOH HOH . J 4 HOH B 30 430 121 HOH HOH . J 4 HOH B 31 431 42 HOH HOH . J 4 HOH B 32 432 55 HOH HOH . J 4 HOH B 33 433 49 HOH HOH . J 4 HOH B 34 434 3 HOH HOH . J 4 HOH B 35 435 113 HOH HOH . J 4 HOH B 36 436 70 HOH HOH . J 4 HOH B 37 437 18 HOH HOH . J 4 HOH B 38 438 24 HOH HOH . J 4 HOH B 39 439 52 HOH HOH . J 4 HOH B 40 440 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 ZUI . . . C 2 -16.629 9.374 -9.047 1 38.17 ? O2 ZUI 301 A 1 HETATM 2 C C21 ZUI . . . C 2 -15.767 10.12 -8.595 1 36.47 ? C21 ZUI 301 A 1 HETATM 3 C C1 ZUI . . . C 2 -15.972 11.512 -8.247 1 34.72 ? C1 ZUI 301 A 1 HETATM 4 C C ZUI . . . C 2 -17.344 12.106 -8.402 1 32.49 ? C ZUI 301 A 1 HETATM 5 N N3 ZUI . . . C 2 -14.482 9.654 -8.429 1 35.92 ? N3 ZUI 301 A 1 HETATM 6 C C20 ZUI . . . C 2 -13.4 10.363 -7.979 1 37.21 ? C20 ZUI 301 A 1 HETATM 7 O O1 ZUI . . . C 2 -12.31 9.848 -7.825 1 37.15 ? O1 ZUI 301 A 1 HETATM 8 N N ZUI . . . C 2 -13.657 11.683 -7.678 1 37.19 ? N ZUI 301 A 1 HETATM 9 C C2 ZUI . . . C 2 -14.916 12.216 -7.814 1 35.04 ? C2 ZUI 301 A 1 HETATM 10 C C3 ZUI . . . C 2 -12.531 12.491 -7.153 1 37.88 ? C3 ZUI 301 A 1 HETATM 11 C C19 ZUI . . . C 2 -12.654 13.968 -7.509 1 38.04 ? C19 ZUI 301 A 1 HETATM 12 C C18 ZUI . . . C 2 -11.455 14.745 -6.935 1 40.41 ? C18 ZUI 301 A 1 HETATM 13 N N1 ZUI . . . C 2 -11.353 14.557 -5.473 1 41.71 ? N1 ZUI 301 A 1 HETATM 14 C C5 ZUI . . . C 2 -11.178 13.131 -5.156 1 39.29 ? C5 ZUI 301 A 1 HETATM 15 C C4 ZUI . . . C 2 -12.375 12.32 -5.653 1 38.26 ? C4 ZUI 301 A 1 HETATM 16 C C6 ZUI . . . C 2 -10.325 15.408 -4.844 1 45.2 ? C6 ZUI 301 A 1 HETATM 17 C C7 ZUI . . . C 2 -8.899 15.139 -5.272 1 49.35 ? C7 ZUI 301 A 1 HETATM 18 C C17 ZUI . . . C 2 -8.119 14.174 -4.645 1 51.89 ? C17 ZUI 301 A 1 HETATM 19 C C10 ZUI . . . C 2 -6.822 13.943 -5.082 1 55.07 ? C10 ZUI 301 A 1 HETATM 20 C C9 ZUI . . . C 2 -6.339 14.704 -6.132 1 54.71 ? C9 ZUI 301 A 1 HETATM 21 N N2 ZUI . . . C 2 -7.064 15.649 -6.738 1 53.2 ? N2 ZUI 301 A 1 HETATM 22 C C8 ZUI . . . C 2 -8.311 15.848 -6.303 1 50.93 ? C8 ZUI 301 A 1 HETATM 23 O O ZUI . . . C 2 -6.015 12.965 -4.491 1 57.95 ? O ZUI 301 A 1 HETATM 24 C C11 ZUI . . . C 2 -6.521 11.689 -4.225 1 60.6 ? C11 ZUI 301 A 1 HETATM 25 C C16 ZUI . . . C 2 -7.575 11.183 -4.97 1 61.75 ? C16 ZUI 301 A 1 HETATM 26 C C15 ZUI . . . C 2 -8.109 9.964 -4.604 1 62.49 ? C15 ZUI 301 A 1 HETATM 27 CL CL ZUI . . . C 2 -9.463 9.344 -5.494 1 61.63 ? CL ZUI 301 A 1 HETATM 28 C C14 ZUI . . . C 2 -7.611 9.236 -3.546 1 62.37 ? C14 ZUI 301 A 1 HETATM 29 C C13 ZUI . . . C 2 -6.543 9.748 -2.832 1 62.26 ? C13 ZUI 301 A 1 HETATM 30 C C12 ZUI . . . C 2 -5.992 10.974 -3.165 1 61.44 ? C12 ZUI 301 A 1 HETATM 31 H H3 ZUI . . . C 2 -17.745 11.969 -9.406 0 38.99 ? H3 ZUI 301 A 1 HETATM 32 H H1 ZUI . . . C 2 -17.342 13.175 -8.195 0 38.99 ? H1 ZUI 301 A 1 HETATM 33 H H2 ZUI . . . C 2 -18.043 11.638 -7.711 0 38.99 ? H2 ZUI 301 A 1 HETATM 34 H H ZUI . . . C 2 -14.308 8.681 -8.663 0 43.1 ? H ZUI 301 A 1 HETATM 35 H H4 ZUI . . . C 2 -15.022 13.267 -7.547 0 42.05 ? H4 ZUI 301 A 1 HETATM 36 H H5 ZUI . . . C 2 -11.625 12.114 -7.624 0 45.45 ? H5 ZUI 301 A 1 HETATM 37 H H22 ZUI . . . C 2 -13.6 14.41 -7.199 0 45.65 ? H22 ZUI 301 A 1 HETATM 38 H H21 ZUI . . . C 2 -12.656 14.075 -8.593 0 45.65 ? H21 ZUI 301 A 1 HETATM 39 H H20 ZUI . . . C 2 -11.451 15.801 -7.202 0 48.5 ? H20 ZUI 301 A 1 HETATM 40 H H19 ZUI . . . C 2 -10.527 14.384 -7.375 0 48.5 ? H19 ZUI 301 A 1 HETATM 41 H H8 ZUI . . . C 2 -10.248 12.76 -5.585 0 47.15 ? H8 ZUI 301 A 1 HETATM 42 H H9 ZUI . . . C 2 -11.031 13.007 -4.084 0 47.15 ? H9 ZUI 301 A 1 HETATM 43 H H6 ZUI . . . C 2 -12.28 11.273 -5.367 0 45.91 ? H6 ZUI 301 A 1 HETATM 44 H H7 ZUI . . . C 2 -13.279 12.652 -5.145 0 45.91 ? H7 ZUI 301 A 1 HETATM 45 H H10 ZUI . . . C 2 -10.419 15.213 -3.776 0 54.24 ? H10 ZUI 301 A 1 HETATM 46 H H11 ZUI . . . C 2 -10.539 16.473 -4.927 0 54.24 ? H11 ZUI 301 A 1 HETATM 47 H H18 ZUI . . . C 2 -8.531 13.603 -3.814 0 62.27 ? H18 ZUI 301 A 1 HETATM 48 H H13 ZUI . . . C 2 -5.33 14.559 -6.514 0 65.66 ? H13 ZUI 301 A 1 HETATM 49 H H12 ZUI . . . C 2 -8.854 16.63 -6.832 0 61.11 ? H12 ZUI 301 A 1 HETATM 50 H H17 ZUI . . . C 2 -7.984 11.719 -5.825 0 74.1 ? H17 ZUI 301 A 1 HETATM 51 H H16 ZUI . . . C 2 -8.053 8.277 -3.282 0 74.85 ? H16 ZUI 301 A 1 HETATM 52 H H15 ZUI . . . C 2 -6.128 9.181 -2 0 74.72 ? H15 ZUI 301 A 1 HETATM 53 H H14 ZUI . . . C 2 -5.151 11.382 -2.605 0 73.73 ? H14 ZUI 301 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #