data_5NRQ # _model_server_result.job_id g5s7L2dDVhp4Q1REEMghpA _model_server_result.datetime_utc '2024-10-19 22:30:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nrq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 5NRQ # _exptl.entry_id 5NRQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.896 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[1-[[5-(3-chloranylphenoxy)pyridin-3-yl]methyl]piperidin-4-yl]-5-methyl-pyrimidine-2,4-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5NRQ _cell.length_a 73.85 _cell.length_b 73.85 _cell.length_c 72.35 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NRQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C22 H23 Cl N4 O3' _chem_comp.formula_weight 426.896 _chem_comp.id ZUI _chem_comp.mon_nstd_flag . _chem_comp.name 1-[1-[[5-(3-chloranylphenoxy)pyridin-3-yl]methyl]piperidin-4-yl]-5-methyl-pyrimidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C21 ZUI doub 376 n n C21 N3 ZUI sing 377 n n C21 C1 ZUI sing 378 n n N3 C20 ZUI sing 379 n n C C1 ZUI sing 380 n n C1 C2 ZUI doub 381 n n C20 O1 ZUI doub 382 n n C20 N ZUI sing 383 n n C2 N ZUI sing 384 n n N C3 ZUI sing 385 n n C19 C3 ZUI sing 386 n n C19 C18 ZUI sing 387 n n C3 C4 ZUI sing 388 n n C18 N1 ZUI sing 389 n n N2 C8 ZUI doub 390 n y N2 C9 ZUI sing 391 n y C8 C7 ZUI sing 392 n y C9 C10 ZUI doub 393 n y C4 C5 ZUI sing 394 n n CL C15 ZUI sing 395 n n N1 C5 ZUI sing 396 n n N1 C6 ZUI sing 397 n n C7 C6 ZUI sing 398 n n C7 C17 ZUI doub 399 n y C10 C17 ZUI sing 400 n y C10 O ZUI sing 401 n n C16 C15 ZUI doub 402 n y C16 C11 ZUI sing 403 n y C15 C14 ZUI sing 404 n y O C11 ZUI sing 405 n n C11 C12 ZUI doub 406 n y C14 C13 ZUI doub 407 n y C12 C13 ZUI sing 408 n y C H3 ZUI sing 409 n n C H1 ZUI sing 410 n n C H2 ZUI sing 411 n n N3 H ZUI sing 412 n n C2 H4 ZUI sing 413 n n C3 H5 ZUI sing 414 n n C19 H22 ZUI sing 415 n n C19 H21 ZUI sing 416 n n C18 H20 ZUI sing 417 n n C18 H19 ZUI sing 418 n n C5 H8 ZUI sing 419 n n C5 H9 ZUI sing 420 n n C4 H6 ZUI sing 421 n n C4 H7 ZUI sing 422 n n C6 H10 ZUI sing 423 n n C6 H11 ZUI sing 424 n n C17 H18 ZUI sing 425 n n C9 H13 ZUI sing 426 n n C8 H12 ZUI sing 427 n n C16 H17 ZUI sing 428 n n C14 H16 ZUI sing 429 n n C13 H15 ZUI sing 430 n n C12 H14 ZUI sing 431 n n # _atom_sites.entry_id 5NRQ _atom_sites.fract_transf_matrix[1][1] 0.013541 _atom_sites.fract_transf_matrix[1][2] 0.007818 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013822 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZUI A 1 301 1 ZUI ZUI . D 3 CL A 1 302 1 CL CL . E 3 CL A 1 303 3 CL CL . F 3 CL A 1 304 4 CL CL . G 2 ZUI B 1 301 2 ZUI ZUI . H 3 CL B 1 302 2 CL CL . I 4 HOH A 1 401 108 HOH HOH . I 4 HOH A 2 402 109 HOH HOH . I 4 HOH A 3 403 40 HOH HOH . I 4 HOH A 4 404 104 HOH HOH . I 4 HOH A 5 405 96 HOH HOH . I 4 HOH A 6 406 12 HOH HOH . I 4 HOH A 7 407 51 HOH HOH . I 4 HOH A 8 408 71 HOH HOH . I 4 HOH A 9 409 31 HOH HOH . I 4 HOH A 10 410 87 HOH HOH . I 4 HOH A 11 411 53 HOH HOH . I 4 HOH A 12 412 92 HOH HOH . I 4 HOH A 13 413 62 HOH HOH . I 4 HOH A 14 414 45 HOH HOH . I 4 HOH A 15 415 65 HOH HOH . I 4 HOH A 16 416 73 HOH HOH . I 4 HOH A 17 417 34 HOH HOH . I 4 HOH A 18 418 57 HOH HOH . I 4 HOH A 19 419 93 HOH HOH . I 4 HOH A 20 420 37 HOH HOH . I 4 HOH A 21 421 74 HOH HOH . I 4 HOH A 22 422 107 HOH HOH . I 4 HOH A 23 423 106 HOH HOH . I 4 HOH A 24 424 27 HOH HOH . I 4 HOH A 25 425 14 HOH HOH . I 4 HOH A 26 426 22 HOH HOH . I 4 HOH A 27 427 26 HOH HOH . I 4 HOH A 28 428 21 HOH HOH . I 4 HOH A 29 429 6 HOH HOH . I 4 HOH A 30 430 41 HOH HOH . I 4 HOH A 31 431 15 HOH HOH . I 4 HOH A 32 432 82 HOH HOH . I 4 HOH A 33 433 7 HOH HOH . I 4 HOH A 34 434 38 HOH HOH . I 4 HOH A 35 435 98 HOH HOH . I 4 HOH A 36 436 11 HOH HOH . I 4 HOH A 37 437 122 HOH HOH . I 4 HOH A 38 438 64 HOH HOH . I 4 HOH A 39 439 90 HOH HOH . I 4 HOH A 40 440 94 HOH HOH . I 4 HOH A 41 441 9 HOH HOH . I 4 HOH A 42 442 69 HOH HOH . I 4 HOH A 43 443 35 HOH HOH . I 4 HOH A 44 444 30 HOH HOH . I 4 HOH A 45 445 72 HOH HOH . I 4 HOH A 46 446 105 HOH HOH . I 4 HOH A 47 447 86 HOH HOH . I 4 HOH A 48 448 61 HOH HOH . I 4 HOH A 49 449 16 HOH HOH . I 4 HOH A 50 450 101 HOH HOH . I 4 HOH A 51 451 54 HOH HOH . I 4 HOH A 52 452 84 HOH HOH . I 4 HOH A 53 453 63 HOH HOH . I 4 HOH A 54 454 118 HOH HOH . I 4 HOH A 55 455 77 HOH HOH . I 4 HOH A 56 456 17 HOH HOH . I 4 HOH A 57 457 75 HOH HOH . I 4 HOH A 58 458 28 HOH HOH . I 4 HOH A 59 459 102 HOH HOH . I 4 HOH A 60 460 29 HOH HOH . I 4 HOH A 61 461 13 HOH HOH . I 4 HOH A 62 462 48 HOH HOH . I 4 HOH A 63 463 95 HOH HOH . I 4 HOH A 64 464 33 HOH HOH . I 4 HOH A 65 465 20 HOH HOH . I 4 HOH A 66 466 79 HOH HOH . I 4 HOH A 67 467 23 HOH HOH . I 4 HOH A 68 468 81 HOH HOH . I 4 HOH A 69 469 5 HOH HOH . I 4 HOH A 70 470 58 HOH HOH . I 4 HOH A 71 471 97 HOH HOH . I 4 HOH A 72 472 91 HOH HOH . I 4 HOH A 73 473 103 HOH HOH . I 4 HOH A 74 474 56 HOH HOH . I 4 HOH A 75 475 39 HOH HOH . I 4 HOH A 76 476 100 HOH HOH . I 4 HOH A 77 477 99 HOH HOH . I 4 HOH A 78 478 67 HOH HOH . I 4 HOH A 79 479 59 HOH HOH . I 4 HOH A 80 480 80 HOH HOH . I 4 HOH A 81 481 68 HOH HOH . I 4 HOH A 82 482 1 HOH HOH . J 4 HOH B 1 401 115 HOH HOH . J 4 HOH B 2 402 4 HOH HOH . J 4 HOH B 3 403 32 HOH HOH . J 4 HOH B 4 404 46 HOH HOH . J 4 HOH B 5 405 78 HOH HOH . J 4 HOH B 6 406 114 HOH HOH . J 4 HOH B 7 407 111 HOH HOH . J 4 HOH B 8 408 8 HOH HOH . J 4 HOH B 9 409 10 HOH HOH . J 4 HOH B 10 410 36 HOH HOH . J 4 HOH B 11 411 76 HOH HOH . J 4 HOH B 12 412 120 HOH HOH . J 4 HOH B 13 413 66 HOH HOH . J 4 HOH B 14 414 50 HOH HOH . J 4 HOH B 15 415 116 HOH HOH . J 4 HOH B 16 416 119 HOH HOH . J 4 HOH B 17 417 89 HOH HOH . J 4 HOH B 18 418 19 HOH HOH . J 4 HOH B 19 419 44 HOH HOH . J 4 HOH B 20 420 112 HOH HOH . J 4 HOH B 21 421 43 HOH HOH . J 4 HOH B 22 422 85 HOH HOH . J 4 HOH B 23 423 83 HOH HOH . J 4 HOH B 24 424 60 HOH HOH . J 4 HOH B 25 425 88 HOH HOH . J 4 HOH B 26 426 25 HOH HOH . J 4 HOH B 27 427 47 HOH HOH . J 4 HOH B 28 428 110 HOH HOH . J 4 HOH B 29 429 2 HOH HOH . J 4 HOH B 30 430 121 HOH HOH . J 4 HOH B 31 431 42 HOH HOH . J 4 HOH B 32 432 55 HOH HOH . J 4 HOH B 33 433 49 HOH HOH . J 4 HOH B 34 434 3 HOH HOH . J 4 HOH B 35 435 113 HOH HOH . J 4 HOH B 36 436 70 HOH HOH . J 4 HOH B 37 437 18 HOH HOH . J 4 HOH B 38 438 24 HOH HOH . J 4 HOH B 39 439 52 HOH HOH . J 4 HOH B 40 440 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 ZUI . . . G 2 -18.834 -7.556 9.323 1 42.49 ? O2 ZUI 301 B 1 HETATM 2 C C21 ZUI . . . G 2 -18.236 -8.523 8.856 1 42.96 ? C21 ZUI 301 B 1 HETATM 3 C C1 ZUI . . . G 2 -18.857 -9.765 8.447 1 43.51 ? C1 ZUI 301 B 1 HETATM 4 C C ZUI . . . G 2 -20.347 -9.894 8.542 1 43.15 ? C ZUI 301 B 1 HETATM 5 N N3 ZUI . . . G 2 -16.861 -8.489 8.743 1 44.77 ? N3 ZUI 301 B 1 HETATM 6 C C20 ZUI . . . G 2 -16.039 -9.498 8.31 1 47.2 ? C20 ZUI 301 B 1 HETATM 7 O O1 ZUI . . . G 2 -14.825 -9.374 8.257 1 46.43 ? O1 ZUI 301 B 1 HETATM 8 N N ZUI . . . G 2 -16.691 -10.655 7.946 1 50.29 ? N ZUI 301 B 1 HETATM 9 C C2 ZUI . . . G 2 -18.064 -10.759 8.016 1 46.11 ? C2 ZUI 301 B 1 HETATM 10 C C3 ZUI . . . G 2 -15.866 -11.771 7.434 1 57.97 ? C3 ZUI 301 B 1 HETATM 11 C C19 ZUI . . . G 2 -15.728 -11.7 5.924 1 61.91 ? C19 ZUI 301 B 1 HETATM 12 C C18 ZUI . . . G 2 -14.905 -12.873 5.422 1 65.31 ? C18 ZUI 301 B 1 HETATM 13 N N1 ZUI . . . G 2 -15.533 -14.143 5.795 1 67.66 ? N1 ZUI 301 B 1 HETATM 14 C C5 ZUI . . . G 2 -15.564 -14.247 7.259 1 63.76 ? C5 ZUI 301 B 1 HETATM 15 C C4 ZUI . . . G 2 -16.409 -13.13 7.865 1 60.38 ? C4 ZUI 301 B 1 HETATM 16 C C6 ZUI . . . G 2 -14.854 -15.29 5.168 1 74.09 ? C6 ZUI 301 B 1 HETATM 17 C C7 ZUI . . . G 2 -13.416 -15.468 5.598 1 80.44 ? C7 ZUI 301 B 1 HETATM 18 C C17 ZUI . . . G 2 -12.388 -14.751 4.999 1 83.65 ? C17 ZUI 301 B 1 HETATM 19 C C10 ZUI . . . G 2 -11.095 -14.863 5.488 1 86.36 ? C10 ZUI 301 B 1 HETATM 20 C C9 ZUI . . . G 2 -10.866 -15.719 6.55 1 85.54 ? C9 ZUI 301 B 1 HETATM 21 N N2 ZUI . . . G 2 -11.833 -16.437 7.126 1 84.66 ? N2 ZUI 301 B 1 HETATM 22 C C8 ZUI . . . G 2 -13.073 -16.302 6.646 1 82.9 ? C8 ZUI 301 B 1 HETATM 23 O O ZUI . . . G 2 -10.067 -14.102 4.928 1 89.25 ? O ZUI 301 B 1 HETATM 24 C C11 ZUI . . . G 2 -10.306 -12.781 4.538 1 91.48 ? C11 ZUI 301 B 1 HETATM 25 C C16 ZUI . . . G 2 -11.02 -11.922 5.361 1 92.13 ? C16 ZUI 301 B 1 HETATM 26 C C15 ZUI . . . G 2 -11.219 -10.624 4.936 1 91.98 ? C15 ZUI 301 B 1 HETATM 27 CL CL ZUI . . . G 2 -12.095 -9.527 5.966 1 91 ? CL ZUI 301 B 1 HETATM 28 C C14 ZUI . . . G 2 -10.734 -10.168 3.73 1 92.36 ? C14 ZUI 301 B 1 HETATM 29 C C13 ZUI . . . G 2 -10.023 -11.041 2.925 1 92.49 ? C13 ZUI 301 B 1 HETATM 30 C C12 ZUI . . . G 2 -9.805 -12.349 3.321 1 92.28 ? C12 ZUI 301 B 1 HETATM 31 H H3 ZUI . . . G 2 -20.762 -10.509 7.745 0 51.79 ? H3 ZUI 301 B 1 HETATM 32 H H1 ZUI . . . G 2 -20.835 -8.922 8.494 0 51.79 ? H1 ZUI 301 B 1 HETATM 33 H H2 ZUI . . . G 2 -20.63 -10.358 9.486 0 51.79 ? H2 ZUI 301 B 1 HETATM 34 H H ZUI . . . G 2 -16.398 -7.626 9.008 0 53.73 ? H ZUI 301 B 1 HETATM 35 H H4 ZUI . . . G 2 -18.488 -11.71 7.698 0 55.33 ? H4 ZUI 301 B 1 HETATM 36 H H5 ZUI . . . G 2 -14.872 -11.657 7.865 0 69.56 ? H5 ZUI 301 B 1 HETATM 37 H H22 ZUI . . . G 2 -15.324 -10.752 5.573 0 74.29 ? H22 ZUI 301 B 1 HETATM 38 H H21 ZUI . . . G 2 -16.718 -11.748 5.474 0 74.29 ? H21 ZUI 301 B 1 HETATM 39 H H20 ZUI . . . G 2 -13.86 -12.838 5.728 0 78.37 ? H20 ZUI 301 B 1 HETATM 40 H H19 ZUI . . . G 2 -14.837 -12.849 4.335 0 78.37 ? H19 ZUI 301 B 1 HETATM 41 H H8 ZUI . . . G 2 -14.552 -14.231 7.659 0 76.52 ? H8 ZUI 301 B 1 HETATM 42 H H9 ZUI . . . G 2 -15.937 -15.228 7.55 0 76.52 ? H9 ZUI 301 B 1 HETATM 43 H H6 ZUI . . . G 2 -16.461 -13.227 8.948 0 72.46 ? H6 ZUI 301 B 1 HETATM 44 H H7 ZUI . . . G 2 -17.443 -13.236 7.54 0 72.46 ? H7 ZUI 301 B 1 HETATM 45 H H10 ZUI . . . G 2 -14.89 -15.09 4.098 0 88.91 ? H10 ZUI 301 B 1 HETATM 46 H H11 ZUI . . . G 2 -15.396 -16.228 5.276 0 88.91 ? H11 ZUI 301 B 1 HETATM 47 H H18 ZUI . . . G 2 -12.602 -14.106 4.148 0 100.38 ? H18 ZUI 301 B 1 HETATM 48 H H13 ZUI . . . G 2 -9.867 -15.843 6.967 0 102.64 ? H13 ZUI 301 B 1 HETATM 49 H H12 ZUI . . . G 2 -13.821 -16.911 7.151 0 99.48 ? H12 ZUI 301 B 1 HETATM 50 H H17 ZUI . . . G 2 -11.421 -12.246 6.321 0 110.55 ? H17 ZUI 301 B 1 HETATM 51 H H16 ZUI . . . G 2 -10.91 -9.139 3.42 0 110.84 ? H16 ZUI 301 B 1 HETATM 52 H H15 ZUI . . . G 2 -9.63 -10.696 1.97 0 110.99 ? H15 ZUI 301 B 1 HETATM 53 H H14 ZUI . . . G 2 -9.248 -13.04 2.691 0 110.73 ? H14 ZUI 301 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 53 #