data_5NRW # _model_server_result.job_id yN3aOUtVPlGnv90oqsE3TA _model_server_result.datetime_utc '2024-11-24 11:38:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nrw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 5NRW # _exptl.entry_id 5NRW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 334.412 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-ethanoyl-3-ethyl-5-methyl-~{N}-(naphthalen-1-ylmethyl)-1~{H}-pyrrole-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment XDM4 _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.65 _cell.angle_gamma 90 _cell.entry_id 5NRW _cell.length_a 90.03 _cell.length_b 34.13 _cell.length_c 40.29 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NRW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H22 N2 O2' _chem_comp.formula_weight 334.412 _chem_comp.id 96N _chem_comp.mon_nstd_flag . _chem_comp.name 4-ethanoyl-3-ethyl-5-methyl-~{N}-(naphthalen-1-ylmethyl)-1~{H}-pyrrole-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms XDM4 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C15 96N doub 1 n y C14 C13 96N sing 2 n y C15 C16 96N sing 3 n y C13 C11 96N doub 4 n y C16 C18 96N doub 5 n y C16 C17 96N sing 6 n y C18 C19 96N sing 7 n y O15 C1 96N doub 8 n n C12 C4 96N sing 9 n n C11 C17 96N sing 10 n y C11 C3 96N sing 11 n n N3 C4 96N sing 12 n y N3 C2 96N sing 13 n y C17 C21 96N doub 14 n y C19 C20 96N doub 15 n y C4 C5 96N doub 16 n y C1 C2 96N sing 17 n n C1 N13 96N sing 18 n n C2 C6 96N doub 19 n y C3 N13 96N sing 20 n n C21 C20 96N sing 21 n y C5 C6 96N sing 22 n y C5 C9 96N sing 23 n n C6 C7 96N sing 24 n n O16 C9 96N doub 25 n n C9 C10 96N sing 26 n n C7 C8 96N sing 27 n n C3 H1 96N sing 28 n n C3 H2 96N sing 29 n n C13 H3 96N sing 30 n n C14 H4 96N sing 31 n n C15 H5 96N sing 32 n n C7 H6 96N sing 33 n n C7 H7 96N sing 34 n n C8 H8 96N sing 35 n n C8 H9 96N sing 36 n n C8 H10 96N sing 37 n n C10 H11 96N sing 38 n n C10 H12 96N sing 39 n n C10 H13 96N sing 40 n n C18 H14 96N sing 41 n n C19 H15 96N sing 42 n n C20 H16 96N sing 43 n n C21 H17 96N sing 44 n n N3 H18 96N sing 45 n n C12 H19 96N sing 46 n n C12 H20 96N sing 47 n n C12 H21 96N sing 48 n n N13 H22 96N sing 49 n n # _atom_sites.entry_id 5NRW _atom_sites.fract_transf_matrix[1][1] 0.011107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000514 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024847 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 96N A 1 1201 1 96N PS6 . C 3 EDO A 1 1202 1 EDO EDO . D 3 EDO A 1 1203 2 EDO EDO . E 3 EDO A 1 1204 3 EDO EDO . F 3 EDO A 1 1205 4 EDO EDO . G 4 HOH A 1 1301 40 HOH HOH . G 4 HOH A 2 1302 62 HOH HOH . G 4 HOH A 3 1303 85 HOH HOH . G 4 HOH A 4 1304 98 HOH HOH . G 4 HOH A 5 1305 34 HOH HOH . G 4 HOH A 6 1306 131 HOH HOH . G 4 HOH A 7 1307 10 HOH HOH . G 4 HOH A 8 1308 148 HOH HOH . G 4 HOH A 9 1309 29 HOH HOH . G 4 HOH A 10 1310 33 HOH HOH . G 4 HOH A 11 1311 87 HOH HOH . G 4 HOH A 12 1312 69 HOH HOH . G 4 HOH A 13 1313 27 HOH HOH . G 4 HOH A 14 1314 66 HOH HOH . G 4 HOH A 15 1315 17 HOH HOH . G 4 HOH A 16 1316 81 HOH HOH . G 4 HOH A 17 1317 78 HOH HOH . G 4 HOH A 18 1318 112 HOH HOH . G 4 HOH A 19 1319 158 HOH HOH . G 4 HOH A 20 1320 133 HOH HOH . G 4 HOH A 21 1321 138 HOH HOH . G 4 HOH A 22 1322 12 HOH HOH . G 4 HOH A 23 1323 77 HOH HOH . G 4 HOH A 24 1324 70 HOH HOH . G 4 HOH A 25 1325 31 HOH HOH . G 4 HOH A 26 1326 86 HOH HOH . G 4 HOH A 27 1327 63 HOH HOH . G 4 HOH A 28 1328 11 HOH HOH . G 4 HOH A 29 1329 91 HOH HOH . G 4 HOH A 30 1330 67 HOH HOH . G 4 HOH A 31 1331 39 HOH HOH . G 4 HOH A 32 1332 75 HOH HOH . G 4 HOH A 33 1333 38 HOH HOH . G 4 HOH A 34 1334 45 HOH HOH . G 4 HOH A 35 1335 25 HOH HOH . G 4 HOH A 36 1336 89 HOH HOH . G 4 HOH A 37 1337 2 HOH HOH . G 4 HOH A 38 1338 60 HOH HOH . G 4 HOH A 39 1339 116 HOH HOH . G 4 HOH A 40 1340 163 HOH HOH . G 4 HOH A 41 1341 7 HOH HOH . G 4 HOH A 42 1342 143 HOH HOH . G 4 HOH A 43 1343 52 HOH HOH . G 4 HOH A 44 1344 166 HOH HOH . G 4 HOH A 45 1345 19 HOH HOH . G 4 HOH A 46 1346 96 HOH HOH . G 4 HOH A 47 1347 24 HOH HOH . G 4 HOH A 48 1348 4 HOH HOH . G 4 HOH A 49 1349 47 HOH HOH . G 4 HOH A 50 1350 13 HOH HOH . G 4 HOH A 51 1351 73 HOH HOH . G 4 HOH A 52 1352 68 HOH HOH . G 4 HOH A 53 1353 64 HOH HOH . G 4 HOH A 54 1354 130 HOH HOH . G 4 HOH A 55 1355 108 HOH HOH . G 4 HOH A 56 1356 6 HOH HOH . G 4 HOH A 57 1357 46 HOH HOH . G 4 HOH A 58 1358 48 HOH HOH . G 4 HOH A 59 1359 79 HOH HOH . G 4 HOH A 60 1360 97 HOH HOH . G 4 HOH A 61 1361 72 HOH HOH . G 4 HOH A 62 1362 59 HOH HOH . G 4 HOH A 63 1363 104 HOH HOH . G 4 HOH A 64 1364 8 HOH HOH . G 4 HOH A 65 1365 16 HOH HOH . G 4 HOH A 66 1366 28 HOH HOH . G 4 HOH A 67 1367 3 HOH HOH . G 4 HOH A 68 1368 115 HOH HOH . G 4 HOH A 69 1369 147 HOH HOH . G 4 HOH A 70 1370 151 HOH HOH . G 4 HOH A 71 1371 111 HOH HOH . G 4 HOH A 72 1372 43 HOH HOH . G 4 HOH A 73 1373 9 HOH HOH . G 4 HOH A 74 1374 83 HOH HOH . G 4 HOH A 75 1375 56 HOH HOH . G 4 HOH A 76 1376 92 HOH HOH . G 4 HOH A 77 1377 32 HOH HOH . G 4 HOH A 78 1378 154 HOH HOH . G 4 HOH A 79 1379 124 HOH HOH . G 4 HOH A 80 1380 22 HOH HOH . G 4 HOH A 81 1381 65 HOH HOH . G 4 HOH A 82 1382 41 HOH HOH . G 4 HOH A 83 1383 80 HOH HOH . G 4 HOH A 84 1384 110 HOH HOH . G 4 HOH A 85 1385 128 HOH HOH . G 4 HOH A 86 1386 26 HOH HOH . G 4 HOH A 87 1387 132 HOH HOH . G 4 HOH A 88 1388 57 HOH HOH . G 4 HOH A 89 1389 144 HOH HOH . G 4 HOH A 90 1390 35 HOH HOH . G 4 HOH A 91 1391 161 HOH HOH . G 4 HOH A 92 1392 120 HOH HOH . G 4 HOH A 93 1393 99 HOH HOH . G 4 HOH A 94 1394 71 HOH HOH . G 4 HOH A 95 1395 50 HOH HOH . G 4 HOH A 96 1396 23 HOH HOH . G 4 HOH A 97 1397 18 HOH HOH . G 4 HOH A 98 1398 21 HOH HOH . G 4 HOH A 99 1399 58 HOH HOH . G 4 HOH A 100 1400 44 HOH HOH . G 4 HOH A 101 1401 153 HOH HOH . G 4 HOH A 102 1402 15 HOH HOH . G 4 HOH A 103 1403 37 HOH HOH . G 4 HOH A 104 1404 1 HOH HOH . G 4 HOH A 105 1405 126 HOH HOH . G 4 HOH A 106 1406 141 HOH HOH . G 4 HOH A 107 1407 162 HOH HOH . G 4 HOH A 108 1408 84 HOH HOH . G 4 HOH A 109 1409 113 HOH HOH . G 4 HOH A 110 1410 30 HOH HOH . G 4 HOH A 111 1411 101 HOH HOH . G 4 HOH A 112 1412 82 HOH HOH . G 4 HOH A 113 1413 42 HOH HOH . G 4 HOH A 114 1414 150 HOH HOH . G 4 HOH A 115 1415 125 HOH HOH . G 4 HOH A 116 1416 157 HOH HOH . G 4 HOH A 117 1417 53 HOH HOH . G 4 HOH A 118 1418 54 HOH HOH . G 4 HOH A 119 1419 118 HOH HOH . G 4 HOH A 120 1420 20 HOH HOH . G 4 HOH A 121 1421 135 HOH HOH . G 4 HOH A 122 1422 51 HOH HOH . G 4 HOH A 123 1423 103 HOH HOH . G 4 HOH A 124 1424 152 HOH HOH . G 4 HOH A 125 1425 121 HOH HOH . G 4 HOH A 126 1426 164 HOH HOH . G 4 HOH A 127 1427 149 HOH HOH . G 4 HOH A 128 1428 102 HOH HOH . G 4 HOH A 129 1429 88 HOH HOH . G 4 HOH A 130 1430 49 HOH HOH . G 4 HOH A 131 1431 145 HOH HOH . G 4 HOH A 132 1432 123 HOH HOH . G 4 HOH A 133 1433 142 HOH HOH . G 4 HOH A 134 1434 165 HOH HOH . G 4 HOH A 135 1435 136 HOH HOH . G 4 HOH A 136 1436 36 HOH HOH . G 4 HOH A 137 1437 90 HOH HOH . G 4 HOH A 138 1438 5 HOH HOH . G 4 HOH A 139 1439 100 HOH HOH . G 4 HOH A 140 1440 74 HOH HOH . G 4 HOH A 141 1441 93 HOH HOH . G 4 HOH A 142 1442 170 HOH HOH . G 4 HOH A 143 1443 61 HOH HOH . G 4 HOH A 144 1444 55 HOH HOH . G 4 HOH A 145 1445 14 HOH HOH . G 4 HOH A 146 1446 139 HOH HOH . G 4 HOH A 147 1447 117 HOH HOH . G 4 HOH A 148 1448 95 HOH HOH . G 4 HOH A 149 1449 129 HOH HOH . G 4 HOH A 150 1450 122 HOH HOH . G 4 HOH A 151 1451 134 HOH HOH . G 4 HOH A 152 1452 127 HOH HOH . G 4 HOH A 153 1453 146 HOH HOH . G 4 HOH A 154 1454 114 HOH HOH . G 4 HOH A 155 1455 155 HOH HOH . G 4 HOH A 156 1456 167 HOH HOH . G 4 HOH A 157 1457 140 HOH HOH . G 4 HOH A 158 1458 76 HOH HOH . G 4 HOH A 159 1459 107 HOH HOH . G 4 HOH A 160 1460 159 HOH HOH . G 4 HOH A 161 1461 119 HOH HOH . G 4 HOH A 162 1462 109 HOH HOH . G 4 HOH A 163 1463 105 HOH HOH . G 4 HOH A 164 1464 156 HOH HOH . G 4 HOH A 165 1465 106 HOH HOH . G 4 HOH A 166 1466 160 HOH HOH . G 4 HOH A 167 1467 169 HOH HOH . G 4 HOH A 168 1468 94 HOH HOH . G 4 HOH A 169 1469 137 HOH HOH . G 4 HOH A 170 1470 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 96N . . . B 2 8.831 16.819 62.307 1 13.03 ? C2 96N 1201 A 1 HETATM 2 C C3 96N . . . B 2 8.963 12.994 62.356 1 15.38 ? C3 96N 1201 A 1 HETATM 3 C C1 96N . . . B 2 8.671 15.371 61.965 1 14.16 ? C1 96N 1201 A 1 HETATM 4 C C4 96N . . . B 2 9.175 18.975 61.891 1 12.08 ? C4 96N 1201 A 1 HETATM 5 C C5 96N . . . B 2 8.952 18.86 63.343 1 12.02 ? C5 96N 1201 A 1 HETATM 6 C C13 96N . . . B 2 9.456 12.11 60.054 1 16.5 ? C13 96N 1201 A 1 HETATM 7 C C14 96N . . . B 2 10.33 11.728 59.033 1 16.66 ? C14 96N 1201 A 1 HETATM 8 C C15 96N . . . B 2 11.707 11.854 59.222 1 16.31 ? C15 96N 1201 A 1 HETATM 9 C C16 96N . . . B 2 12.192 12.344 60.432 1 16.44 ? C16 96N 1201 A 1 HETATM 10 C C17 96N . . . B 2 11.312 12.727 61.462 1 15.89 ? C17 96N 1201 A 1 HETATM 11 C C6 96N . . . B 2 8.71 17.433 63.66 1 12.8 ? C6 96N 1201 A 1 HETATM 12 C C7 96N . . . B 2 8.438 16.757 64.988 1 13.35 ? C7 96N 1201 A 1 HETATM 13 C C8 96N . . . B 2 9.675 16.809 65.862 1 13.7 ? C8 96N 1201 A 1 HETATM 14 C C9 96N . . . B 2 8.956 20.024 64.26 1 11.84 ? C9 96N 1201 A 1 HETATM 15 C C10 96N . . . B 2 8.313 19.875 65.597 1 11.94 ? C10 96N 1201 A 1 HETATM 16 C C18 96N . . . B 2 13.57 12.464 60.601 1 16.56 ? C18 96N 1201 A 1 HETATM 17 C C19 96N . . . B 2 14.087 12.952 61.792 1 16.31 ? C19 96N 1201 A 1 HETATM 18 C C20 96N . . . B 2 13.217 13.337 62.811 1 16.2 ? C20 96N 1201 A 1 HETATM 19 C C21 96N . . . B 2 11.842 13.228 62.649 1 16.06 ? C21 96N 1201 A 1 HETATM 20 N N3 96N . . . B 2 9.084 17.746 61.381 1 12.47 ? N3 96N 1201 A 1 HETATM 21 C C12 96N . . . B 2 9.454 20.209 61.1 1 11.81 ? C12 96N 1201 A 1 HETATM 22 N N13 96N . . . B 2 9.099 14.39 62.741 1 14.56 ? N13 96N 1201 A 1 HETATM 23 O O15 96N . . . B 2 8.136 15.153 60.879 1 14.43 ? O15 96N 1201 A 1 HETATM 24 O O16 96N . . . B 2 9.443 21.071 63.904 1 11.18 ? O16 96N 1201 A 1 HETATM 25 C C11 96N . . . B 2 9.941 12.606 61.268 1 15.98 ? C11 96N 1201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #