data_5NSG # _model_server_result.job_id 5ocam_gIZg3QHFwPEWW9CQ _model_server_result.datetime_utc '2025-01-10 15:03:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nsg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1009}' # _entry.id 5NSG # _exptl.entry_id 5NSG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NSG _cell.length_a 50 _cell.length_b 147.01 _cell.length_c 76.37 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NSG _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 38.185 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 2 5 4 NAG MAN C1 O1 . O2 HO2 . sing 5 ? 2 6 3 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 2 7 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1001 NAG 2 n B NAG 2 B 2 NAG A 1002 NAG 2 n B BMA 3 B 3 BMA A 1003 BMA 2 n B MAN 4 B 4 MAN A 1004 MAN 2 n B NAG 5 B 5 NAG A 1005 NAG 2 n B MAN 6 B 6 MAN A 1006 MAN 2 n B FUC 7 B 7 FUC A 1007 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 46 A CYS 261 1_555 A SG CYS 106 A CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 152 A CYS 367 1_555 A SG CYS 210 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 82 A ASN 297 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale3 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale6 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 sing covale ? covale7 B O2 MAN . B MAN 4 1_555 B C1 NAG . B NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? metalc ? metalc1 A NE2 HIS 95 A HIS 310 1_555 D ZN ZN . A ZN 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A OE1 GLU 103 A GLU 318 1_555 C ZN ZN . A ZN 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc3 A OE2 GLU 103 A GLU 318 1_555 C ZN ZN . A ZN 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc4 A OE1 GLU 103 A GLU 318 1_555 C ZN ZN . A ZN 1008 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc5 A NE2 HIS 220 A HIS 435 1_555 D ZN ZN . A ZN 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc6 D ZN ZN . A ZN 1009 1_555 F O ACT . A ACT 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc7 D ZN ZN . A ZN 1009 1_555 F OXT ACT . A ACT 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc8 D ZN ZN . A ZN 1009 1_555 G O HOH . A HOH 1171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NSG _atom_sites.fract_transf_matrix[1][1] 0.02 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006802 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1008 4 ZN ZN . D 3 ZN A 1 1009 5 ZN ZN . E 3 ZN A 1 1010 6 ZN ZN . F 4 ACT A 1 1011 1 ACT ACT . G 5 HOH A 1 1101 139 HOH HOH . G 5 HOH A 2 1102 42 HOH HOH . G 5 HOH A 3 1103 68 HOH HOH . G 5 HOH A 4 1104 36 HOH HOH . G 5 HOH A 5 1105 47 HOH HOH . G 5 HOH A 6 1106 48 HOH HOH . G 5 HOH A 7 1107 138 HOH HOH . G 5 HOH A 8 1108 137 HOH HOH . G 5 HOH A 9 1109 69 HOH HOH . G 5 HOH A 10 1110 9 HOH HOH . G 5 HOH A 11 1111 106 HOH HOH . G 5 HOH A 12 1112 3 HOH HOH . G 5 HOH A 13 1113 14 HOH HOH . G 5 HOH A 14 1114 71 HOH HOH . G 5 HOH A 15 1115 12 HOH HOH . G 5 HOH A 16 1116 5 HOH HOH . G 5 HOH A 17 1117 28 HOH HOH . G 5 HOH A 18 1118 10 HOH HOH . G 5 HOH A 19 1119 23 HOH HOH . G 5 HOH A 20 1120 13 HOH HOH . G 5 HOH A 21 1121 27 HOH HOH . G 5 HOH A 22 1122 117 HOH HOH . G 5 HOH A 23 1123 15 HOH HOH . G 5 HOH A 24 1124 82 HOH HOH . G 5 HOH A 25 1125 66 HOH HOH . G 5 HOH A 26 1126 91 HOH HOH . G 5 HOH A 27 1127 29 HOH HOH . G 5 HOH A 28 1128 24 HOH HOH . G 5 HOH A 29 1129 17 HOH HOH . G 5 HOH A 30 1130 134 HOH HOH . G 5 HOH A 31 1131 41 HOH HOH . G 5 HOH A 32 1132 81 HOH HOH . G 5 HOH A 33 1133 95 HOH HOH . G 5 HOH A 34 1134 61 HOH HOH . G 5 HOH A 35 1135 70 HOH HOH . G 5 HOH A 36 1136 26 HOH HOH . G 5 HOH A 37 1137 37 HOH HOH . G 5 HOH A 38 1138 43 HOH HOH . G 5 HOH A 39 1139 6 HOH HOH . G 5 HOH A 40 1140 11 HOH HOH . G 5 HOH A 41 1141 40 HOH HOH . G 5 HOH A 42 1142 19 HOH HOH . G 5 HOH A 43 1143 73 HOH HOH . G 5 HOH A 44 1144 133 HOH HOH . G 5 HOH A 45 1145 20 HOH HOH . G 5 HOH A 46 1146 45 HOH HOH . G 5 HOH A 47 1147 22 HOH HOH . G 5 HOH A 48 1148 2 HOH HOH . G 5 HOH A 49 1149 103 HOH HOH . G 5 HOH A 50 1150 60 HOH HOH . G 5 HOH A 51 1151 31 HOH HOH . G 5 HOH A 52 1152 1 HOH HOH . G 5 HOH A 53 1153 4 HOH HOH . G 5 HOH A 54 1154 94 HOH HOH . G 5 HOH A 55 1155 79 HOH HOH . G 5 HOH A 56 1156 105 HOH HOH . G 5 HOH A 57 1157 33 HOH HOH . G 5 HOH A 58 1158 64 HOH HOH . G 5 HOH A 59 1159 125 HOH HOH . G 5 HOH A 60 1160 107 HOH HOH . G 5 HOH A 61 1161 121 HOH HOH . G 5 HOH A 62 1162 39 HOH HOH . G 5 HOH A 63 1163 140 HOH HOH . G 5 HOH A 64 1164 67 HOH HOH . G 5 HOH A 65 1165 78 HOH HOH . G 5 HOH A 66 1166 97 HOH HOH . G 5 HOH A 67 1167 114 HOH HOH . G 5 HOH A 68 1168 98 HOH HOH . G 5 HOH A 69 1169 96 HOH HOH . G 5 HOH A 70 1170 75 HOH HOH . G 5 HOH A 71 1171 129 HOH HOH . G 5 HOH A 72 1172 21 HOH HOH . G 5 HOH A 73 1173 46 HOH HOH . G 5 HOH A 74 1174 50 HOH HOH . G 5 HOH A 75 1175 8 HOH HOH . G 5 HOH A 76 1176 126 HOH HOH . G 5 HOH A 77 1177 32 HOH HOH . G 5 HOH A 78 1178 18 HOH HOH . G 5 HOH A 79 1179 80 HOH HOH . G 5 HOH A 80 1180 132 HOH HOH . G 5 HOH A 81 1181 89 HOH HOH . G 5 HOH A 82 1182 88 HOH HOH . G 5 HOH A 83 1183 38 HOH HOH . G 5 HOH A 84 1184 124 HOH HOH . G 5 HOH A 85 1185 7 HOH HOH . G 5 HOH A 86 1186 25 HOH HOH . G 5 HOH A 87 1187 102 HOH HOH . G 5 HOH A 88 1188 118 HOH HOH . G 5 HOH A 89 1189 135 HOH HOH . G 5 HOH A 90 1190 77 HOH HOH . G 5 HOH A 91 1191 122 HOH HOH . G 5 HOH A 92 1192 84 HOH HOH . G 5 HOH A 93 1193 83 HOH HOH . G 5 HOH A 94 1194 90 HOH HOH . G 5 HOH A 95 1195 112 HOH HOH . G 5 HOH A 96 1196 72 HOH HOH . G 5 HOH A 97 1197 86 HOH HOH . G 5 HOH A 98 1198 100 HOH HOH . G 5 HOH A 99 1199 93 HOH HOH . G 5 HOH A 100 1200 44 HOH HOH . G 5 HOH A 101 1201 92 HOH HOH . G 5 HOH A 102 1202 110 HOH HOH . G 5 HOH A 103 1203 59 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -23.948 _atom_site.Cartn_y -2.39 _atom_site.Cartn_z 6.628 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.46 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1009 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 471 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #