data_5NTH
#
_model_server_result.job_id            L6HLB0vP-QuwwIY3Qo4Fpw 
_model_server_result.datetime_utc      '2024-11-01 12:20:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nth 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    5NTH 
#
_exptl.entry_id    5NTH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5NTH 
_cell.length_a            116.439 
_cell.length_b            116.439 
_cell.length_c            91.491 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NTH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_675 -y+1,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 201.678264 0 
3 'crystal symmetry operation' 3_465 -x+y-1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -174.6585 100.839132 0 
4 'crystal symmetry operation' 4_466 y-1,x+1,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -174.6585 100.839132 91.491 
5 'crystal symmetry operation' 5_676 x-y+1,-y+2,-z+1 1 0 0 0 -1 0 0 0 -1 0 201.678264 91.491 
6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 91.491 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NZ LYS 298 A LYS 299 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc2 A OD2 ASP 303 A ASP 304 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc3 A OD2 ASP 303 A ASP 304 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? 
metalc ? metalc4 A OD2 ASP 321 A ASP 322 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? 
metalc ? metalc5 A O ASP 388 A ASP 389 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
metalc ? metalc6 A OD1 ASP 388 A ASP 389 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? 
metalc ? metalc7 A OE2 GLU 390 A GLU 391 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? 
metalc ? metalc8 A OE1 GLU 390 A GLU 391 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? 
metalc ? metalc9 C MN MN . A MN 602 1_555 E O2 BB2 . A BB2 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
metalc ? metalc10 D MN MN . A MN 603 1_555 E O4 BB2 . A BB2 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc11 D MN MN . A MN 603 1_555 E N1 BB2 . A BB2 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? 
metalc ? metalc12 D MN MN . A MN 603 1_555 E O2 BB2 . A BB2 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5NTH 
_atom_sites.fract_transf_matrix[1][1]    0.008588 
_atom_sites.fract_transf_matrix[1][2]    0.004958 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009917 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01093 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BCT A 1 601 1 BCT BCT . 
C 3 MN A 1 602 1 MN MN . 
D 3 MN A 1 603 2 MN MN . 
E 4 BB2 A 1 604 1 BB2 BB2 . 
F 5 HOH A 1 701 48 HOH HOH . 
F 5 HOH A 2 702 34 HOH HOH . 
F 5 HOH A 3 703 8 HOH HOH . 
F 5 HOH A 4 704 44 HOH HOH . 
F 5 HOH A 5 705 1 HOH HOH . 
F 5 HOH A 6 706 35 HOH HOH . 
F 5 HOH A 7 707 15 HOH HOH . 
F 5 HOH A 8 708 20 HOH HOH . 
F 5 HOH A 9 709 5 HOH HOH . 
F 5 HOH A 10 710 32 HOH HOH . 
F 5 HOH A 11 711 3 HOH HOH . 
F 5 HOH A 12 712 27 HOH HOH . 
F 5 HOH A 13 713 17 HOH HOH . 
F 5 HOH A 14 714 21 HOH HOH . 
F 5 HOH A 15 715 37 HOH HOH . 
F 5 HOH A 16 716 30 HOH HOH . 
F 5 HOH A 17 717 49 HOH HOH . 
F 5 HOH A 18 718 42 HOH HOH . 
F 5 HOH A 19 719 31 HOH HOH . 
F 5 HOH A 20 720 25 HOH HOH . 
F 5 HOH A 21 721 38 HOH HOH . 
F 5 HOH A 22 722 33 HOH HOH . 
F 5 HOH A 23 723 11 HOH HOH . 
F 5 HOH A 24 724 36 HOH HOH . 
F 5 HOH A 25 725 9 HOH HOH . 
F 5 HOH A 26 726 4 HOH HOH . 
F 5 HOH A 27 727 23 HOH HOH . 
F 5 HOH A 28 728 22 HOH HOH . 
F 5 HOH A 29 729 12 HOH HOH . 
F 5 HOH A 30 730 24 HOH HOH . 
F 5 HOH A 31 731 43 HOH HOH . 
F 5 HOH A 32 732 47 HOH HOH . 
F 5 HOH A 33 733 14 HOH HOH . 
F 5 HOH A 34 734 6 HOH HOH . 
F 5 HOH A 35 735 7 HOH HOH . 
F 5 HOH A 36 736 13 HOH HOH . 
F 5 HOH A 37 737 39 HOH HOH . 
F 5 HOH A 38 738 29 HOH HOH . 
F 5 HOH A 39 739 45 HOH HOH . 
F 5 HOH A 40 740 18 HOH HOH . 
F 5 HOH A 41 741 19 HOH HOH . 
F 5 HOH A 42 742 50 HOH HOH . 
F 5 HOH A 43 743 40 HOH HOH . 
F 5 HOH A 44 744 2 HOH HOH . 
F 5 HOH A 45 745 26 HOH HOH . 
F 5 HOH A 46 746 46 HOH HOH . 
F 5 HOH A 47 747 10 HOH HOH . 
F 5 HOH A 48 748 16 HOH HOH . 
F 5 HOH A 49 749 28 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -48.138 
_atom_site.Cartn_y               88.033 
_atom_site.Cartn_z               29.849 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        58.02 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           602 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#