data_5NTP # _model_server_result.job_id VG5ZYXVtGQ35Z3iR8WIMyg _model_server_result.datetime_utc '2024-11-22 12:55:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ntp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5NTP # _exptl.entry_id 5NTP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 470.007 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (S)-N-(5-chloro-3-((4-(cyclopentanecarbonyl)-3-methylpiperazin-1-yl)methyl)-2-methylphenyl)-2-methylpyrimidine-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NTP _cell.length_a 72.31 _cell.length_b 128.372 _cell.length_c 46.304 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NTP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H32 Cl N5 O2' _chem_comp.formula_weight 470.007 _chem_comp.id 98E _chem_comp.mon_nstd_flag . _chem_comp.name (S)-N-(5-chloro-3-((4-(cyclopentanecarbonyl)-3-methylpiperazin-1-yl)methyl)-2-methylphenyl)-2-methylpyrimidine-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N30 C29 98E doub 1 n y N30 C25 98E sing 2 n y C31 C25 98E sing 3 n n C29 C28 98E sing 4 n y C25 N26 98E doub 5 n y O33 C32 98E doub 6 n n C28 C32 98E sing 7 n n C28 C27 98E doub 8 n y N26 C27 98E sing 9 n y C32 N24 98E sing 10 n n N24 C15 98E sing 11 n n C16 C15 98E doub 12 n y C16 C17 98E sing 13 n y CL C17 98E sing 14 n n C15 C20 98E sing 15 n y C14 C5 98E sing 16 n n C17 C18 98E doub 17 n y C5 C6 98E sing 18 n n C5 N4 98E sing 19 n n C20 C21 98E sing 20 n n C20 C19 98E doub 21 n y O13 C12 98E doub 22 n n C6 N1 98E sing 23 n n C18 C19 98E sing 24 n y C19 C23 98E sing 25 n n C12 N4 98E sing 26 n n C12 C8 98E sing 27 n n N4 C3 98E sing 28 n n N1 C23 98E sing 29 n n N1 C2 98E sing 30 n n C7 C8 98E sing 31 n n C7 C11 98E sing 32 n n C8 C9 98E sing 33 n n C3 C2 98E sing 34 n n C10 C11 98E sing 35 n n C10 C9 98E sing 36 n n C2 H1 98E sing 37 n n C2 H2 98E sing 38 n n C3 H3 98E sing 39 n n C3 H4 98E sing 40 n n C11 H5 98E sing 41 n n C11 H6 98E sing 42 n n C14 H7 98E sing 43 n n C14 H8 98E sing 44 n n C14 H9 98E sing 45 n n C16 H10 98E sing 46 n n C18 H11 98E sing 47 n n C21 H12 98E sing 48 n n C21 H13 98E sing 49 n n C21 H14 98E sing 50 n n C23 H15 98E sing 51 n n C23 H16 98E sing 52 n n C27 H17 98E sing 53 n n C29 H18 98E sing 54 n n C5 H20 98E sing 55 n n C6 H21 98E sing 56 n n C6 H22 98E sing 57 n n C7 H23 98E sing 58 n n C7 H24 98E sing 59 n n C8 H25 98E sing 60 n n C9 H26 98E sing 61 n n C9 H27 98E sing 62 n n C10 H28 98E sing 63 n n C10 H29 98E sing 64 n n N24 H30 98E sing 65 n n C31 H31 98E sing 66 n n C31 H32 98E sing 67 n n C31 H33 98E sing 68 n n # _atom_sites.entry_id 5NTP _atom_sites.fract_transf_matrix[1][1] 0.013829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 98E A 1 501 1 98E LI1 . C 3 HOH A 1 601 99 HOH HOH . C 3 HOH A 2 602 18 HOH HOH . C 3 HOH A 3 603 140 HOH HOH . C 3 HOH A 4 604 134 HOH HOH . C 3 HOH A 5 605 150 HOH HOH . C 3 HOH A 6 606 177 HOH HOH . C 3 HOH A 7 607 100 HOH HOH . C 3 HOH A 8 608 179 HOH HOH . C 3 HOH A 9 609 149 HOH HOH . C 3 HOH A 10 610 32 HOH HOH . C 3 HOH A 11 611 129 HOH HOH . C 3 HOH A 12 612 48 HOH HOH . C 3 HOH A 13 613 144 HOH HOH . C 3 HOH A 14 614 72 HOH HOH . C 3 HOH A 15 615 109 HOH HOH . C 3 HOH A 16 616 56 HOH HOH . C 3 HOH A 17 617 161 HOH HOH . C 3 HOH A 18 618 123 HOH HOH . C 3 HOH A 19 619 119 HOH HOH . C 3 HOH A 20 620 26 HOH HOH . C 3 HOH A 21 621 101 HOH HOH . C 3 HOH A 22 622 152 HOH HOH . C 3 HOH A 23 623 136 HOH HOH . C 3 HOH A 24 624 75 HOH HOH . C 3 HOH A 25 625 24 HOH HOH . C 3 HOH A 26 626 175 HOH HOH . C 3 HOH A 27 627 16 HOH HOH . C 3 HOH A 28 628 79 HOH HOH . C 3 HOH A 29 629 52 HOH HOH . C 3 HOH A 30 630 104 HOH HOH . C 3 HOH A 31 631 33 HOH HOH . C 3 HOH A 32 632 110 HOH HOH . C 3 HOH A 33 633 17 HOH HOH . C 3 HOH A 34 634 62 HOH HOH . C 3 HOH A 35 635 86 HOH HOH . C 3 HOH A 36 636 124 HOH HOH . C 3 HOH A 37 637 23 HOH HOH . C 3 HOH A 38 638 163 HOH HOH . C 3 HOH A 39 639 173 HOH HOH . C 3 HOH A 40 640 3 HOH HOH . C 3 HOH A 41 641 15 HOH HOH . C 3 HOH A 42 642 10 HOH HOH . C 3 HOH A 43 643 19 HOH HOH . C 3 HOH A 44 644 51 HOH HOH . C 3 HOH A 45 645 13 HOH HOH . C 3 HOH A 46 646 70 HOH HOH . C 3 HOH A 47 647 102 HOH HOH . C 3 HOH A 48 648 137 HOH HOH . C 3 HOH A 49 649 71 HOH HOH . C 3 HOH A 50 650 73 HOH HOH . C 3 HOH A 51 651 172 HOH HOH . C 3 HOH A 52 652 41 HOH HOH . C 3 HOH A 53 653 42 HOH HOH . C 3 HOH A 54 654 171 HOH HOH . C 3 HOH A 55 655 108 HOH HOH . C 3 HOH A 56 656 5 HOH HOH . C 3 HOH A 57 657 157 HOH HOH . C 3 HOH A 58 658 159 HOH HOH . C 3 HOH A 59 659 64 HOH HOH . C 3 HOH A 60 660 166 HOH HOH . C 3 HOH A 61 661 20 HOH HOH . C 3 HOH A 62 662 68 HOH HOH . C 3 HOH A 63 663 85 HOH HOH . C 3 HOH A 64 664 92 HOH HOH . C 3 HOH A 65 665 188 HOH HOH . C 3 HOH A 66 666 1 HOH HOH . C 3 HOH A 67 667 34 HOH HOH . C 3 HOH A 68 668 91 HOH HOH . C 3 HOH A 69 669 78 HOH HOH . C 3 HOH A 70 670 2 HOH HOH . C 3 HOH A 71 671 106 HOH HOH . C 3 HOH A 72 672 153 HOH HOH . C 3 HOH A 73 673 135 HOH HOH . C 3 HOH A 74 674 112 HOH HOH . C 3 HOH A 75 675 11 HOH HOH . C 3 HOH A 76 676 103 HOH HOH . C 3 HOH A 77 677 148 HOH HOH . C 3 HOH A 78 678 162 HOH HOH . C 3 HOH A 79 679 30 HOH HOH . C 3 HOH A 80 680 43 HOH HOH . C 3 HOH A 81 681 37 HOH HOH . C 3 HOH A 82 682 167 HOH HOH . C 3 HOH A 83 683 61 HOH HOH . C 3 HOH A 84 684 146 HOH HOH . C 3 HOH A 85 685 4 HOH HOH . C 3 HOH A 86 686 28 HOH HOH . C 3 HOH A 87 687 14 HOH HOH . C 3 HOH A 88 688 120 HOH HOH . C 3 HOH A 89 689 189 HOH HOH . C 3 HOH A 90 690 66 HOH HOH . C 3 HOH A 91 691 44 HOH HOH . C 3 HOH A 92 692 29 HOH HOH . C 3 HOH A 93 693 6 HOH HOH . C 3 HOH A 94 694 81 HOH HOH . C 3 HOH A 95 695 95 HOH HOH . C 3 HOH A 96 696 88 HOH HOH . C 3 HOH A 97 697 97 HOH HOH . C 3 HOH A 98 698 45 HOH HOH . C 3 HOH A 99 699 65 HOH HOH . C 3 HOH A 100 700 74 HOH HOH . C 3 HOH A 101 701 12 HOH HOH . C 3 HOH A 102 702 8 HOH HOH . C 3 HOH A 103 703 46 HOH HOH . C 3 HOH A 104 704 183 HOH HOH . C 3 HOH A 105 705 38 HOH HOH . C 3 HOH A 106 706 96 HOH HOH . C 3 HOH A 107 707 59 HOH HOH . C 3 HOH A 108 708 147 HOH HOH . C 3 HOH A 109 709 176 HOH HOH . C 3 HOH A 110 710 7 HOH HOH . C 3 HOH A 111 711 49 HOH HOH . C 3 HOH A 112 712 77 HOH HOH . C 3 HOH A 113 713 127 HOH HOH . C 3 HOH A 114 714 63 HOH HOH . C 3 HOH A 115 715 27 HOH HOH . C 3 HOH A 116 716 55 HOH HOH . C 3 HOH A 117 717 57 HOH HOH . C 3 HOH A 118 718 47 HOH HOH . C 3 HOH A 119 719 39 HOH HOH . C 3 HOH A 120 720 131 HOH HOH . C 3 HOH A 121 721 76 HOH HOH . C 3 HOH A 122 722 50 HOH HOH . C 3 HOH A 123 723 130 HOH HOH . C 3 HOH A 124 724 40 HOH HOH . C 3 HOH A 125 725 178 HOH HOH . C 3 HOH A 126 726 22 HOH HOH . C 3 HOH A 127 727 21 HOH HOH . C 3 HOH A 128 728 105 HOH HOH . C 3 HOH A 129 729 117 HOH HOH . C 3 HOH A 130 730 25 HOH HOH . C 3 HOH A 131 731 143 HOH HOH . C 3 HOH A 132 732 145 HOH HOH . C 3 HOH A 133 733 36 HOH HOH . C 3 HOH A 134 734 128 HOH HOH . C 3 HOH A 135 735 181 HOH HOH . C 3 HOH A 136 736 87 HOH HOH . C 3 HOH A 137 737 69 HOH HOH . C 3 HOH A 138 738 9 HOH HOH . C 3 HOH A 139 739 35 HOH HOH . C 3 HOH A 140 740 31 HOH HOH . C 3 HOH A 141 741 82 HOH HOH . C 3 HOH A 142 742 93 HOH HOH . C 3 HOH A 143 743 116 HOH HOH . C 3 HOH A 144 744 133 HOH HOH . C 3 HOH A 145 745 132 HOH HOH . C 3 HOH A 146 746 118 HOH HOH . C 3 HOH A 147 747 53 HOH HOH . C 3 HOH A 148 748 84 HOH HOH . C 3 HOH A 149 749 113 HOH HOH . C 3 HOH A 150 750 111 HOH HOH . C 3 HOH A 151 751 83 HOH HOH . C 3 HOH A 152 752 58 HOH HOH . C 3 HOH A 153 753 126 HOH HOH . C 3 HOH A 154 754 122 HOH HOH . C 3 HOH A 155 755 89 HOH HOH . C 3 HOH A 156 756 164 HOH HOH . C 3 HOH A 157 757 121 HOH HOH . C 3 HOH A 158 758 60 HOH HOH . C 3 HOH A 159 759 170 HOH HOH . C 3 HOH A 160 760 158 HOH HOH . C 3 HOH A 161 761 142 HOH HOH . C 3 HOH A 162 762 160 HOH HOH . C 3 HOH A 163 763 165 HOH HOH . C 3 HOH A 164 764 154 HOH HOH . C 3 HOH A 165 765 151 HOH HOH . C 3 HOH A 166 766 156 HOH HOH . C 3 HOH A 167 767 114 HOH HOH . C 3 HOH A 168 768 94 HOH HOH . C 3 HOH A 169 769 187 HOH HOH . C 3 HOH A 170 770 191 HOH HOH . C 3 HOH A 171 771 67 HOH HOH . C 3 HOH A 172 772 168 HOH HOH . C 3 HOH A 173 773 141 HOH HOH . C 3 HOH A 174 774 54 HOH HOH . C 3 HOH A 175 775 184 HOH HOH . C 3 HOH A 176 776 155 HOH HOH . C 3 HOH A 177 777 125 HOH HOH . C 3 HOH A 178 778 98 HOH HOH . C 3 HOH A 179 779 107 HOH HOH . C 3 HOH A 180 780 182 HOH HOH . C 3 HOH A 181 781 138 HOH HOH . C 3 HOH A 182 782 180 HOH HOH . C 3 HOH A 183 783 190 HOH HOH . C 3 HOH A 184 784 174 HOH HOH . C 3 HOH A 185 785 139 HOH HOH . C 3 HOH A 186 786 115 HOH HOH . C 3 HOH A 187 787 169 HOH HOH . C 3 HOH A 188 788 80 HOH HOH . C 3 HOH A 189 789 185 HOH HOH . C 3 HOH A 190 790 186 HOH HOH . C 3 HOH A 191 791 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 98E . . . B 2 19.411 12.831 23.694 1 15.63 ? C2 98E 501 A 1 HETATM 2 C C3 98E . . . B 2 20.787 12.188 23.399 1 15.83 ? C3 98E 501 A 1 HETATM 3 C C11 98E . . . B 2 25.938 13.458 23.75 1 19.19 ? C11 98E 501 A 1 HETATM 4 C C12 98E . . . B 2 22.612 13.18 22.046 1 17.31 ? C12 98E 501 A 1 HETATM 5 C C14 98E . . . B 2 20.211 11.343 20.216 1 15.95 ? C14 98E 501 A 1 HETATM 6 C C15 98E . . . B 2 14.943 11.985 19.928 1 15.49 ? C15 98E 501 A 1 HETATM 7 C C16 98E . . . B 2 14.308 13.182 19.57 1 15.16 ? C16 98E 501 A 1 HETATM 8 C C17 98E . . . B 2 14.622 14.353 20.277 1 15.24 ? C17 98E 501 A 1 HETATM 9 C C18 98E . . . B 2 15.549 14.347 21.315 1 15.18 ? C18 98E 501 A 1 HETATM 10 C C19 98E . . . B 2 16.185 13.155 21.669 1 15.28 ? C19 98E 501 A 1 HETATM 11 C C20 98E . . . B 2 15.888 11.964 20.975 1 15.16 ? C20 98E 501 A 1 HETATM 12 C C21 98E . . . B 2 16.567 10.617 21.328 1 14.97 ? C21 98E 501 A 1 HETATM 13 C C23 98E . . . B 2 17.177 13.246 22.837 1 15.47 ? C23 98E 501 A 1 HETATM 14 C C25 98E . . . B 2 14.425 6.693 16.264 1 18.67 ? C25 98E 501 A 1 HETATM 15 C C27 98E . . . B 2 14.987 8.119 18.031 1 18.28 ? C27 98E 501 A 1 HETATM 16 C C28 98E . . . B 2 14.581 9.237 17.286 1 17.47 ? C28 98E 501 A 1 HETATM 17 C C29 98E . . . B 2 14.11 9.014 15.984 1 17.86 ? C29 98E 501 A 1 HETATM 18 N N1 98E . . . B 2 18.534 12.764 22.499 1 15.57 ? N1 98E 501 A 1 HETATM 19 N N4 98E . . . B 2 21.33 12.716 22.137 1 16.52 ? N4 98E 501 A 1 HETATM 20 C C5 98E . . . B 2 20.47 12.699 20.933 1 15.68 ? C5 98E 501 A 1 HETATM 21 C C6 98E . . . B 2 19.15 13.422 21.311 1 15.91 ? C6 98E 501 A 1 HETATM 22 C C7 98E . . . B 2 24.958 12.604 22.928 1 18.76 ? C7 98E 501 A 1 HETATM 23 C C8 98E . . . B 2 23.559 13.216 23.238 1 18.07 ? C8 98E 501 A 1 HETATM 24 C C9 98E . . . B 2 23.835 14.652 23.783 1 19.04 ? C9 98E 501 A 1 HETATM 25 C C10 98E . . . B 2 25.353 14.873 23.571 1 18.91 ? C10 98E 501 A 1 HETATM 26 O O13 98E . . . B 2 23.073 13.602 20.991 1 17.78 ? O13 98E 501 A 1 HETATM 27 CL CL 98E . . . B 2 13.862 15.869 19.897 1 15.78 ? CL 98E 501 A 1 HETATM 28 N N24 98E . . . B 2 14.713 10.758 19.254 1 15.92 ? N24 98E 501 A 1 HETATM 29 N N26 98E . . . B 2 14.899 6.876 17.515 1 18.76 ? N26 98E 501 A 1 HETATM 30 N N30 98E . . . B 2 14.04 7.748 15.511 1 18.84 ? N30 98E 501 A 1 HETATM 31 C C31 98E . . . B 2 14.336 5.282 15.695 1 19.95 ? C31 98E 501 A 1 HETATM 32 C C32 98E . . . B 2 14.742 10.604 17.911 1 16.42 ? C32 98E 501 A 1 HETATM 33 O O33 98E . . . B 2 14.932 11.538 17.145 1 16.35 ? O33 98E 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 33 #