data_5NTT
#
_model_server_result.job_id            65tHj6vrl-KBbfLna1WB7g 
_model_server_result.datetime_utc      '2024-11-24 06:59:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ntt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":801}' 
#
_entry.id    5NTT 
#
_exptl.entry_id    5NTT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              676.731 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(2,6-DIETHYLPHENYL)-1-METHYL-8-({4-[(1-METHYLPIPERIDIN-4-YL)CARBAMOYL]-2-(TRIFLUOROMETHOXY)PHENYL}AMINO)-4,5-DIHYDRO-1H-PYRAZOLO[4,3-H]QUINAZOLINE-3-CARBOXAMIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NTT 
_cell.length_a            70.672 
_cell.length_b            112.01 
_cell.length_c            116.126 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NTT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 175 A GLY 685 1_555 A N TPO 176 A TPO 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale2 A C TPO 176 A TPO 686 1_555 A N VAL 177 A VAL 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C35 H39 F3 N8 O3' 
_chem_comp.formula_weight    676.731 
_chem_comp.id                SVE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(2,6-DIETHYLPHENYL)-1-METHYL-8-({4-[(1-METHYLPIPERIDIN-4-YL)CARBAMOYL]-2-(TRIFLUOROMETHOXY)PHENYL}AMINO)-4,5-DIHYDRO-1H-PYRAZOLO[4,3-H]QUINAZOLINE-3-CARBOXAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 SVE sing 299 n n 
C1 C3 SVE sing 300 n n 
C2 C13 SVE sing 301 n n 
C3 C4 SVE doub 302 n y 
C3 C7 SVE sing 303 n y 
C4 N5 SVE sing 304 n y 
C4 C12 SVE sing 305 n y 
N5 N6 SVE sing 306 n y 
N5 C11 SVE sing 307 n n 
N6 C7 SVE doub 308 n y 
C7 C8 SVE sing 309 n n 
C8 N9 SVE sing 310 n n 
C8 O10 SVE doub 311 n n 
N9 C40 SVE sing 312 n n 
C12 C13 SVE doub 313 n y 
C12 N17 SVE sing 314 n y 
C13 C14 SVE sing 315 n y 
C14 N15 SVE doub 316 n y 
N15 C16 SVE sing 317 n y 
C16 N17 SVE doub 318 n y 
C16 N18 SVE sing 319 n n 
N18 C19 SVE sing 320 n n 
C19 C20 SVE sing 321 n y 
C19 C24 SVE doub 322 n y 
C20 C21 SVE doub 323 n y 
C20 O25 SVE sing 324 n n 
C21 C22 SVE sing 325 n y 
C22 C23 SVE doub 326 n y 
C22 C26 SVE sing 327 n n 
C23 C24 SVE sing 328 n y 
O25 C36 SVE sing 329 n n 
C26 N27 SVE sing 330 n n 
C26 O28 SVE doub 331 n n 
N27 C29 SVE sing 332 n n 
C29 C30 SVE sing 333 n n 
C29 C34 SVE sing 334 n n 
C30 C31 SVE sing 335 n n 
C31 N32 SVE sing 336 n n 
N32 C33 SVE sing 337 n n 
N32 C35 SVE sing 338 n n 
C33 C34 SVE sing 339 n n 
C36 F37 SVE sing 340 n n 
C36 F38 SVE sing 341 n n 
C36 F39 SVE sing 342 n n 
C40 C41 SVE sing 343 n y 
C40 C45 SVE doub 344 n y 
C41 C42 SVE doub 345 n y 
C41 C48 SVE sing 346 n n 
C42 C43 SVE sing 347 n y 
C43 C44 SVE doub 348 n y 
C44 C45 SVE sing 349 n y 
C45 C46 SVE sing 350 n n 
C46 C47 SVE sing 351 n n 
C48 C49 SVE sing 352 n n 
C1 H10 SVE sing 353 n n 
C1 H11 SVE sing 354 n n 
C2 H20 SVE sing 355 n n 
C2 H21 SVE sing 356 n n 
C11 H111 SVE sing 357 n n 
C11 H112 SVE sing 358 n n 
C11 H113 SVE sing 359 n n 
N9 H9 SVE sing 360 n n 
C14 H14 SVE sing 361 n n 
N18 H18 SVE sing 362 n n 
C24 H24 SVE sing 363 n n 
C21 H22 SVE sing 364 n n 
C23 H23 SVE sing 365 n n 
N27 H27 SVE sing 366 n n 
C29 H29 SVE sing 367 n n 
C30 H301 SVE sing 368 n n 
C30 H302 SVE sing 369 n n 
C34 H341 SVE sing 370 n n 
C34 H342 SVE sing 371 n n 
C31 H311 SVE sing 372 n n 
C31 H312 SVE sing 373 n n 
C33 H331 SVE sing 374 n n 
C33 H332 SVE sing 375 n n 
C35 H351 SVE sing 376 n n 
C35 H352 SVE sing 377 n n 
C35 H353 SVE sing 378 n n 
C42 H42 SVE sing 379 n n 
C48 H481 SVE sing 380 n n 
C48 H482 SVE sing 381 n n 
C43 H43 SVE sing 382 n n 
C44 H44 SVE sing 383 n n 
C46 H461 SVE sing 384 n n 
C46 H462 SVE sing 385 n n 
C47 H471 SVE sing 386 n n 
C47 H472 SVE sing 387 n n 
C47 H473 SVE sing 388 n n 
C49 H491 SVE sing 389 n n 
C49 H492 SVE sing 390 n n 
C49 H493 SVE sing 391 n n 
#
_atom_sites.entry_id                     5NTT 
_atom_sites.fract_transf_matrix[1][1]    0.01415 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008928 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008611 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SVE A 1 801 900 SVE SVE . 
C 3 EDO A 1 802 1 EDO EDO . 
D 3 EDO A 1 803 2 EDO EDO . 
E 4 HOH A 1 901 5 HOH HOH . 
E 4 HOH A 2 902 26 HOH HOH . 
E 4 HOH A 3 903 20 HOH HOH . 
E 4 HOH A 4 904 23 HOH HOH . 
E 4 HOH A 5 905 17 HOH HOH . 
E 4 HOH A 6 906 33 HOH HOH . 
E 4 HOH A 7 907 19 HOH HOH . 
E 4 HOH A 8 908 12 HOH HOH . 
E 4 HOH A 9 909 22 HOH HOH . 
E 4 HOH A 10 910 16 HOH HOH . 
E 4 HOH A 11 911 15 HOH HOH . 
E 4 HOH A 12 912 13 HOH HOH . 
E 4 HOH A 13 913 31 HOH HOH . 
E 4 HOH A 14 914 24 HOH HOH . 
E 4 HOH A 15 915 21 HOH HOH . 
E 4 HOH A 16 916 34 HOH HOH . 
E 4 HOH A 17 917 32 HOH HOH . 
E 4 HOH A 18 918 27 HOH HOH . 
E 4 HOH A 19 919 3 HOH HOH . 
E 4 HOH A 20 920 25 HOH HOH . 
E 4 HOH A 21 921 6 HOH HOH . 
E 4 HOH A 22 922 8 HOH HOH . 
E 4 HOH A 23 923 28 HOH HOH . 
E 4 HOH A 24 924 10 HOH HOH . 
E 4 HOH A 25 925 14 HOH HOH . 
E 4 HOH A 26 926 35 HOH HOH . 
E 4 HOH A 27 927 2 HOH HOH . 
E 4 HOH A 28 928 9 HOH HOH . 
E 4 HOH A 29 929 11 HOH HOH . 
E 4 HOH A 30 930 30 HOH HOH . 
E 4 HOH A 31 931 29 HOH HOH . 
E 4 HOH A 32 932 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SVE . . . B 2 1.717 -14.348 -20.275 1 74.99 ? C1 SVE 801 A 1 
HETATM 2 C C2 SVE . . . B 2 1.344 -13.085 -21.03 1 74.87 ? C2 SVE 801 A 1 
HETATM 3 C C3 SVE . . . B 2 1.817 -14.146 -18.794 1 77.8 ? C3 SVE 801 A 1 
HETATM 4 C C4 SVE . . . B 2 1.271 -13.05 -18.17 1 79.05 ? C4 SVE 801 A 1 
HETATM 5 N N5 SVE . . . B 2 1.527 -13.186 -16.826 1 81.59 ? N5 SVE 801 A 1 
HETATM 6 N N6 SVE . . . B 2 2.207 -14.343 -16.581 1 81.45 ? N6 SVE 801 A 1 
HETATM 7 C C7 SVE . . . B 2 2.374 -14.924 -17.78 1 80.71 ? C7 SVE 801 A 1 
HETATM 8 C C8 SVE . . . B 2 3.098 -16.208 -17.897 1 82.4 ? C8 SVE 801 A 1 
HETATM 9 N N9 SVE . . . B 2 3.541 -16.729 -16.73 1 84.6 ? N9 SVE 801 A 1 
HETATM 10 O O10 SVE . . . B 2 3.289 -16.721 -18.996 1 81.21 ? O10 SVE 801 A 1 
HETATM 11 C C11 SVE . . . B 2 1.193 -12.318 -15.698 1 82.6 ? C11 SVE 801 A 1 
HETATM 12 C C12 SVE . . . B 2 0.64 -12.005 -18.851 1 77.18 ? C12 SVE 801 A 1 
HETATM 13 C C13 SVE . . . B 2 0.671 -11.986 -20.257 1 75.62 ? C13 SVE 801 A 1 
HETATM 14 C C14 SVE . . . B 2 0.065 -10.915 -20.91 1 74.52 ? C14 SVE 801 A 1 
HETATM 15 N N15 SVE . . . B 2 -0.517 -9.928 -20.233 1 75.06 ? N15 SVE 801 A 1 
HETATM 16 C C16 SVE . . . B 2 -0.49 -9.997 -18.889 1 77.13 ? C16 SVE 801 A 1 
HETATM 17 N N17 SVE . . . B 2 0.078 -10.989 -18.185 1 77.25 ? N17 SVE 801 A 1 
HETATM 18 N N18 SVE . . . B 2 -1.073 -9.021 -18.152 1 80.81 ? N18 SVE 801 A 1 
HETATM 19 C C19 SVE . . . B 2 -1.544 -9.069 -16.819 1 85.48 ? C19 SVE 801 A 1 
HETATM 20 C C20 SVE . . . B 2 -1.58 -7.892 -16.055 1 89.67 ? C20 SVE 801 A 1 
HETATM 21 C C21 SVE . . . B 2 -2.05 -7.959 -14.757 1 92.22 ? C21 SVE 801 A 1 
HETATM 22 C C22 SVE . . . B 2 -2.469 -9.168 -14.203 1 92.18 ? C22 SVE 801 A 1 
HETATM 23 C C23 SVE . . . B 2 -2.423 -10.325 -14.971 1 88.35 ? C23 SVE 801 A 1 
HETATM 24 C C24 SVE . . . B 2 -1.969 -10.283 -16.268 1 86.43 ? C24 SVE 801 A 1 
HETATM 25 O O25 SVE . . . B 2 -1.14 -6.748 -16.716 1 91.3 ? O25 SVE 801 A 1 
HETATM 26 C C26 SVE . . . B 2 -2.98 -9.287 -12.8 1 96.79 ? C26 SVE 801 A 1 
HETATM 27 N N27 SVE . . . B 2 -2.919 -8.162 -12.006 1 99.53 ? N27 SVE 801 A 1 
HETATM 28 O O28 SVE . . . B 2 -3.437 -10.36 -12.406 1 99.48 ? O28 SVE 801 A 1 
HETATM 29 C C29 SVE . . . B 2 -3.623 -8.063 -10.722 1 102.51 ? C29 SVE 801 A 1 
HETATM 30 C C30 SVE . . . B 2 -2.672 -7.663 -9.603 1 104.02 ? C30 SVE 801 A 1 
HETATM 31 C C31 SVE . . . B 2 -3.428 -7.544 -8.288 1 106.53 ? C31 SVE 801 A 1 
HETATM 32 N N32 SVE . . . B 2 -4.533 -6.577 -8.392 1 109.08 ? N32 SVE 801 A 1 
HETATM 33 C C33 SVE . . . B 2 -5.476 -6.957 -9.455 1 106.98 ? C33 SVE 801 A 1 
HETATM 34 C C34 SVE . . . B 2 -4.774 -7.067 -10.8 1 105.21 ? C34 SVE 801 A 1 
HETATM 35 C C35 SVE . . . B 2 -5.228 -6.418 -7.091 1 111.3 ? C35 SVE 801 A 1 
HETATM 36 C C36 SVE . . . B 2 -0.932 -5.606 -16.046 1 94.98 ? C36 SVE 801 A 1 
HETATM 37 F F37 SVE . . . B 2 -0.194 -5.761 -14.96 1 94.67 ? F37 SVE 801 A 1 
HETATM 38 F F38 SVE . . . B 2 -2.053 -5.012 -15.679 1 98.4 ? F38 SVE 801 A 1 
HETATM 39 F F39 SVE . . . B 2 -0.298 -4.749 -16.82 1 96.99 ? F39 SVE 801 A 1 
HETATM 40 C C40 SVE . . . B 2 4.195 -17.982 -16.541 1 86.27 ? C40 SVE 801 A 1 
HETATM 41 C C41 SVE . . . B 2 5.576 -17.994 -16.297 1 87.01 ? C41 SVE 801 A 1 
HETATM 42 C C42 SVE . . . B 2 6.192 -19.236 -16.119 1 88.25 ? C42 SVE 801 A 1 
HETATM 43 C C43 SVE . . . B 2 5.472 -20.41 -16.168 1 88.58 ? C43 SVE 801 A 1 
HETATM 44 C C44 SVE . . . B 2 4.116 -20.372 -16.407 1 87.85 ? C44 SVE 801 A 1 
HETATM 45 C C45 SVE . . . B 2 3.439 -19.164 -16.595 1 86.05 ? C45 SVE 801 A 1 
HETATM 46 C C46 SVE . . . B 2 1.946 -19.186 -16.851 1 83.09 ? C46 SVE 801 A 1 
HETATM 47 C C47 SVE . . . B 2 1.069 -19.117 -15.62 1 82.23 ? C47 SVE 801 A 1 
HETATM 48 C C48 SVE . . . B 2 6.408 -16.729 -16.248 1 86.36 ? C48 SVE 801 A 1 
HETATM 49 C C49 SVE . . . B 2 6.379 -15.98 -14.938 1 87.21 ? C49 SVE 801 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           53 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           1020 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           49 
#