data_5NTU # _model_server_result.job_id H3iP11Rvmkh20n9Pm9qqRQ _model_server_result.datetime_utc '2024-12-01 23:37:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ntu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":410}' # _entry.id 5NTU # _exptl.entry_id 5NTU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 21 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.39 _cell.angle_gamma 90 _cell.entry_id 5NTU _cell.length_a 168.157 _cell.length_b 36.301 _cell.length_c 120.448 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NTU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 97 A CYS 137 1_555 A SG CYS 98 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 232 A CYS 272 1_555 A SG CYS 242 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 241 A CYS 281 1_555 A SG CYS 300 A CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 269 A CYS 309 1_555 A SG CYS 332 A CYS 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 273 A CYS 313 1_555 A SG CYS 334 A CYS 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf6 A SG CYS 299 A CYS 339 1_555 B SG CYS 299 B CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf7 B SG CYS 97 B CYS 137 1_555 B SG CYS 98 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf8 B SG CYS 232 B CYS 272 1_555 B SG CYS 242 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf9 B SG CYS 241 B CYS 281 1_555 B SG CYS 300 B CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 B SG CYS 269 B CYS 309 1_555 B SG CYS 332 B CYS 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 B SG CYS 273 B CYS 313 1_555 B SG CYS 334 B CYS 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5NTU _atom_sites.fract_transf_matrix[1][1] 0.005947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001526 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008571 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 401 7 CL CL . D 3 EDO A 1 402 13 EDO EDO . E 3 EDO A 1 403 29 EDO EDO . F 3 EDO A 1 404 31 EDO EDO . G 3 EDO A 1 405 35 EDO EDO . H 3 EDO A 1 406 43 EDO EDO . I 2 CL B 1 401 6 CL CL . J 3 EDO B 1 402 2 EDO EDO . K 3 EDO B 1 403 4 EDO EDO . L 3 EDO B 1 404 5 EDO EDO . M 3 EDO B 1 405 6 EDO EDO . N 3 EDO B 1 406 7 EDO EDO . O 3 EDO B 1 407 8 EDO EDO . P 3 EDO B 1 408 9 EDO EDO . Q 3 EDO B 1 409 12 EDO EDO . R 3 EDO B 1 410 17 EDO EDO . S 3 EDO B 1 411 18 EDO EDO . T 3 EDO B 1 412 23 EDO EDO . U 3 EDO B 1 413 24 EDO EDO . V 3 EDO B 1 414 30 EDO EDO . W 3 EDO B 1 415 33 EDO EDO . X 3 EDO B 1 416 36 EDO EDO . Y 3 EDO B 1 417 42 EDO EDO . Z 4 HOH A 1 501 4 HOH HOH . Z 4 HOH A 2 502 73 HOH HOH . Z 4 HOH A 3 503 95 HOH HOH . Z 4 HOH A 4 504 76 HOH HOH . Z 4 HOH A 5 505 62 HOH HOH . Z 4 HOH A 6 506 71 HOH HOH . Z 4 HOH A 7 507 96 HOH HOH . Z 4 HOH A 8 508 88 HOH HOH . Z 4 HOH A 9 509 78 HOH HOH . Z 4 HOH A 10 510 69 HOH HOH . Z 4 HOH A 11 511 56 HOH HOH . Z 4 HOH A 12 512 84 HOH HOH . Z 4 HOH A 13 513 55 HOH HOH . Z 4 HOH A 14 514 51 HOH HOH . AA 4 HOH B 1 501 93 HOH HOH . AA 4 HOH B 2 502 97 HOH HOH . AA 4 HOH B 3 503 91 HOH HOH . AA 4 HOH B 4 504 94 HOH HOH . AA 4 HOH B 5 505 14 HOH HOH . AA 4 HOH B 6 506 36 HOH HOH . AA 4 HOH B 7 507 82 HOH HOH . AA 4 HOH B 8 508 80 HOH HOH . AA 4 HOH B 9 509 92 HOH HOH . AA 4 HOH B 10 510 60 HOH HOH . AA 4 HOH B 11 511 53 HOH HOH . AA 4 HOH B 12 512 89 HOH HOH . AA 4 HOH B 13 513 87 HOH HOH . AA 4 HOH B 14 514 90 HOH HOH . AA 4 HOH B 15 515 59 HOH HOH . AA 4 HOH B 16 516 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . R 3 -21.358 -11.282 50.934 1 99.66 ? C1 EDO 410 B 1 HETATM 2 O O1 EDO . . . R 3 -20.7 -10.988 52.167 1 100.39 ? O1 EDO 410 B 1 HETATM 3 C C2 EDO . . . R 3 -21.477 -9.991 50.069 1 97.03 ? C2 EDO 410 B 1 HETATM 4 O O2 EDO . . . R 3 -20.181 -9.455 49.826 1 95.16 ? O2 EDO 410 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #