data_5NU7
#
_model_server_result.job_id            h-p1GGM2yaVJiyPtwQ6gQQ 
_model_server_result.datetime_utc      '2025-06-21 05:48:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nu7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5NU7 
#
_exptl.entry_id    5NU7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              286.452 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5NU7 
_cell.length_a            103.097 
_cell.length_b            103.097 
_cell.length_c            73.552 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NU7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 70 A CYS 70 1_555 A SG CYS 174 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 120 A CYS 120 1_555 A SG CYS 129 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
#
_chem_comp.formula           'C20 H30 O' 
_chem_comp.formula_weight    286.452 
_chem_comp.id                RTL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RTL sing 277 n n 
C1 C6 RTL sing 278 n n 
C1 C16 RTL sing 279 n n 
C1 C17 RTL sing 280 n n 
C2 C3 RTL sing 281 n n 
C2 H21 RTL sing 282 n n 
C2 H22 RTL sing 283 n n 
C3 C4 RTL sing 284 n n 
C3 H31 RTL sing 285 n n 
C3 H32 RTL sing 286 n n 
C4 C5 RTL sing 287 n n 
C4 H41 RTL sing 288 n n 
C4 H42 RTL sing 289 n n 
C5 C6 RTL doub 290 n n 
C5 C18 RTL sing 291 n n 
C6 C7 RTL sing 292 n n 
C7 C8 RTL doub 293 e n 
C7 H7 RTL sing 294 n n 
C8 C9 RTL sing 295 n n 
C8 H8 RTL sing 296 n n 
C9 C10 RTL doub 297 e n 
C9 C19 RTL sing 298 n n 
C10 C11 RTL sing 299 n n 
C10 H10 RTL sing 300 n n 
C11 C12 RTL doub 301 e n 
C11 H11 RTL sing 302 n n 
C12 C13 RTL sing 303 n n 
C12 H12 RTL sing 304 n n 
C13 C14 RTL doub 305 e n 
C13 C20 RTL sing 306 n n 
C14 C15 RTL sing 307 n n 
C14 H14 RTL sing 308 n n 
C15 O1 RTL sing 309 n n 
C15 H151 RTL sing 310 n n 
C15 H152 RTL sing 311 n n 
O1 HO1 RTL sing 312 n n 
C16 H161 RTL sing 313 n n 
C16 H162 RTL sing 314 n n 
C16 H163 RTL sing 315 n n 
C17 H171 RTL sing 316 n n 
C17 H172 RTL sing 317 n n 
C17 H173 RTL sing 318 n n 
C18 H181 RTL sing 319 n n 
C18 H182 RTL sing 320 n n 
C18 H183 RTL sing 321 n n 
C19 H191 RTL sing 322 n n 
C19 H192 RTL sing 323 n n 
C19 H193 RTL sing 324 n n 
C20 H201 RTL sing 325 n n 
C20 H202 RTL sing 326 n n 
C20 H203 RTL sing 327 n n 
#
_atom_sites.entry_id                     5NU7 
_atom_sites.fract_transf_matrix[1][1]    0.0097 
_atom_sites.fract_transf_matrix[1][2]    0.0056 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0112 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013596 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RTL A 1 201 183 RTL RTL . 
C 3 CL A 1 202 193 CL CL . 
D 4 HOH A 1 301 242 HOH HOH . 
D 4 HOH A 2 302 218 HOH HOH . 
D 4 HOH A 3 303 226 HOH HOH . 
D 4 HOH A 4 304 225 HOH HOH . 
D 4 HOH A 5 305 272 HOH HOH . 
D 4 HOH A 6 306 277 HOH HOH . 
D 4 HOH A 7 307 209 HOH HOH . 
D 4 HOH A 8 308 224 HOH HOH . 
D 4 HOH A 9 309 222 HOH HOH . 
D 4 HOH A 10 310 245 HOH HOH . 
D 4 HOH A 11 311 219 HOH HOH . 
D 4 HOH A 12 312 246 HOH HOH . 
D 4 HOH A 13 313 205 HOH HOH . 
D 4 HOH A 14 314 251 HOH HOH . 
D 4 HOH A 15 315 253 HOH HOH . 
D 4 HOH A 16 316 238 HOH HOH . 
D 4 HOH A 17 317 228 HOH HOH . 
D 4 HOH A 18 318 223 HOH HOH . 
D 4 HOH A 19 319 215 HOH HOH . 
D 4 HOH A 20 320 248 HOH HOH . 
D 4 HOH A 21 321 250 HOH HOH . 
D 4 HOH A 22 322 274 HOH HOH . 
D 4 HOH A 23 323 258 HOH HOH . 
D 4 HOH A 24 324 221 HOH HOH . 
D 4 HOH A 25 325 233 HOH HOH . 
D 4 HOH A 26 326 206 HOH HOH . 
D 4 HOH A 27 327 217 HOH HOH . 
D 4 HOH A 28 328 254 HOH HOH . 
D 4 HOH A 29 329 237 HOH HOH . 
D 4 HOH A 30 330 257 HOH HOH . 
D 4 HOH A 31 331 210 HOH HOH . 
D 4 HOH A 32 332 255 HOH HOH . 
D 4 HOH A 33 333 212 HOH HOH . 
D 4 HOH A 34 334 201 HOH HOH . 
D 4 HOH A 35 335 203 HOH HOH . 
D 4 HOH A 36 336 267 HOH HOH . 
D 4 HOH A 37 337 234 HOH HOH . 
D 4 HOH A 38 338 232 HOH HOH . 
D 4 HOH A 39 339 231 HOH HOH . 
D 4 HOH A 40 340 235 HOH HOH . 
D 4 HOH A 41 341 252 HOH HOH . 
D 4 HOH A 42 342 244 HOH HOH . 
D 4 HOH A 43 343 236 HOH HOH . 
D 4 HOH A 44 344 256 HOH HOH . 
D 4 HOH A 45 345 211 HOH HOH . 
D 4 HOH A 46 346 202 HOH HOH . 
D 4 HOH A 47 347 240 HOH HOH . 
D 4 HOH A 48 348 241 HOH HOH . 
D 4 HOH A 49 349 229 HOH HOH . 
D 4 HOH A 50 350 216 HOH HOH . 
D 4 HOH A 51 351 239 HOH HOH . 
D 4 HOH A 52 352 208 HOH HOH . 
D 4 HOH A 53 353 264 HOH HOH . 
D 4 HOH A 54 354 249 HOH HOH . 
D 4 HOH A 55 355 259 HOH HOH . 
D 4 HOH A 56 356 214 HOH HOH . 
D 4 HOH A 57 357 204 HOH HOH . 
D 4 HOH A 58 358 269 HOH HOH . 
D 4 HOH A 59 359 270 HOH HOH . 
D 4 HOH A 60 360 263 HOH HOH . 
D 4 HOH A 61 361 266 HOH HOH . 
D 4 HOH A 62 362 268 HOH HOH . 
D 4 HOH A 63 363 227 HOH HOH . 
D 4 HOH A 64 364 276 HOH HOH . 
D 4 HOH A 65 365 265 HOH HOH . 
D 4 HOH A 66 366 275 HOH HOH . 
D 4 HOH A 67 367 273 HOH HOH . 
D 4 HOH A 68 368 243 HOH HOH . 
D 4 HOH A 69 369 247 HOH HOH . 
D 4 HOH A 70 370 260 HOH HOH . 
D 4 HOH A 71 371 230 HOH HOH . 
D 4 HOH A 72 372 261 HOH HOH . 
D 4 HOH A 73 373 262 HOH HOH . 
D 4 HOH A 74 374 207 HOH HOH . 
D 4 HOH A 75 375 213 HOH HOH . 
D 4 HOH A 76 376 271 HOH HOH . 
D 4 HOH A 77 377 220 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RTL . . . B 2 18.1 8.875 -0.393 1 32.01 ? C1 RTL 201 A 1 
HETATM 2 C C2 RTL . . . B 2 19.458 8.256 -0.711 1 30.98 ? C2 RTL 201 A 1 
HETATM 3 C C3 RTL . . . B 2 19.53 6.841 -0.163 1 39.88 ? C3 RTL 201 A 1 
HETATM 4 C C4 RTL . . . B 2 18.513 5.96 -0.866 1 37.16 ? C4 RTL 201 A 1 
HETATM 5 C C5 RTL . . . B 2 17.14 6.598 -0.867 1 35.76 ? C5 RTL 201 A 1 
HETATM 6 C C6 RTL . . . B 2 16.955 7.917 -0.668 1 37.04 ? C6 RTL 201 A 1 
HETATM 7 C C7 RTL . . . B 2 15.592 8.476 -0.545 1 36.44 ? C7 RTL 201 A 1 
HETATM 8 C C8 RTL . . . B 2 14.601 7.68 -0.176 1 36.28 ? C8 RTL 201 A 1 
HETATM 9 C C9 RTL . . . B 2 13.268 8.252 0.099 1 35.75 ? C9 RTL 201 A 1 
HETATM 10 C C10 RTL . . . B 2 12.366 7.493 0.739 1 43.89 ? C10 RTL 201 A 1 
HETATM 11 C C11 RTL . . . B 2 11.034 7.969 1.115 1 33.55 ? C11 RTL 201 A 1 
HETATM 12 C C12 RTL . . . B 2 10.253 7.107 1.764 1 40.63 ? C12 RTL 201 A 1 
HETATM 13 C C13 RTL . . . B 2 8.882 7.414 2.21 1 44.77 ? C13 RTL 201 A 1 
HETATM 14 C C14 RTL . . . B 2 8.2 6.437 2.826 1 43.41 ? C14 RTL 201 A 1 
HETATM 15 C C15 RTL . . . B 2 6.785 6.643 3.309 1 50.42 ? C15 RTL 201 A 1 
HETATM 16 O O1 RTL . . . B 2 5.903 5.813 2.539 1 50.48 ? O1 RTL 201 A 1 
HETATM 17 C C16 RTL . . . B 2 17.914 10.181 -1.161 1 30.94 ? C16 RTL 201 A 1 
HETATM 18 C C17 RTL . . . B 2 18.034 9.154 1.105 1 31.9 ? C17 RTL 201 A 1 
HETATM 19 C C18 RTL . . . B 2 15.97 5.695 -1.169 1 38.31 ? C18 RTL 201 A 1 
HETATM 20 C C19 RTL . . . B 2 12.961 9.675 -0.27 1 41.93 ? C19 RTL 201 A 1 
HETATM 21 C C20 RTL . . . B 2 8.254 8.756 1.975 1 39.72 ? C20 RTL 201 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           775 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           21 
#